mRNA_F-serratus_M_contig722.18467.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig722.18467.1
Unique NamemRNA_F-serratus_M_contig722.18467.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig722.18467.1 vs. uniprot
Match: D7FZ56_ECTSI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ56_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.270e-35
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    7 MGGGHDHGMEGKATEGEMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLE 204
            MGG HD GMEGKATE EM++A +PMAFRDSCAHLL+PLNKCRR TMYLPW+CSHERHIYEKCQYL+
Sbjct:    1 MGGDHD-GMEGKATEEEMVAAKMPMAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLD 65
[Close]
BLAST of mRNA_F-serratus_M_contig722.18467.1 vs. uniprot
Match: A0A0G4MZR7_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=7 Tax=Plectosphaerellaceae TaxID=1033978 RepID=A0A0G4MZR7_9PEZI)

HSP 1 Score: 92.8 bits (229), Expect = 3.000e-23
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   16 GHDHGMEGKATEGEMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLE 204
            G D+  +G AT  EM  A LP+A+RDSCAHLLIPLN+CR  T YLPW+CS ERH YEKCQY E
Sbjct:    2 GSDNAPKGPATREEMREARLPLAYRDSCAHLLIPLNRCRTETWYLPWKCSDERHGYEKCQYEE 64
[Close]
BLAST of mRNA_F-serratus_M_contig722.18467.1 vs. uniprot
Match: F0XYL9_AURAN (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYL9_AURAN)

HSP 1 Score: 91.7 bits (226), Expect = 4.190e-23
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   43 ATEGEMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLE 204
            AT  EM  AGL +A+RD+CAHLLIPLNKCRR T Y+PWEC H RH YEKCQY+E
Sbjct:    1 ATRKEMSDAGLLIAYRDACAHLLIPLNKCRRQTFYMPWECGHYRHEYEKCQYVE 54
[Close]
BLAST of mRNA_F-serratus_M_contig722.18467.1 vs. uniprot
Match: I1S5X9_GIBZE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=10 Tax=Fusarium TaxID=5506 RepID=I1S5X9_GIBZE)

HSP 1 Score: 92.4 bits (228), Expect = 4.380e-23
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   40 KATEGEMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLE 204
            +AT  EM  A LP+A+RDSCAHLLIPLNKCRR T Y PW+CS ERH YEKCQY+E
Sbjct:   11 QATREEMRDAKLPLAYRDSCAHLLIPLNKCRRDTWYAPWKCSDERHSYEKCQYVE 65
[Close]
BLAST of mRNA_F-serratus_M_contig722.18467.1 vs. uniprot
Match: A0A8H4LWB4_9HYPO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Ophiocordycipitaceae TaxID=474942 RepID=A0A8H4LWB4_9HYPO)

HSP 1 Score: 92.4 bits (228), Expect = 4.380e-23
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   40 KATEGEMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLE 204
            +AT  EM  A LP+A+RDSCAH+LIPLNKCRR T Y PW+C+ ERH YEKCQYLE
Sbjct:   11 RATREEMRDARLPLAYRDSCAHILIPLNKCRRATWYAPWKCTDERHSYEKCQYLE 65
[Close]
BLAST of mRNA_F-serratus_M_contig722.18467.1 vs. uniprot
Match: G9MJU7_HYPVG (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=6 Tax=Hypocreales TaxID=5125 RepID=G9MJU7_HYPVG)

HSP 1 Score: 92.4 bits (228), Expect = 4.380e-23
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:   22 DHGMEGK-ATEGEMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLE 204
            D   EG+ AT  EM  A LP+A+RDSCAHLLIPLNKCRR T Y PW+CS ERH YEKCQY+E
Sbjct:    4 DAATEGRQATREEMRDARLPLAYRDSCAHLLIPLNKCRRETWYAPWKCSDERHSYEKCQYVE 65
[Close]
BLAST of mRNA_F-serratus_M_contig722.18467.1 vs. uniprot
Match: A0A6A6UGI8_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6UGI8_9PEZI)

HSP 1 Score: 92.8 bits (229), Expect = 4.680e-23
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:   16 GHDH-GMEGKATEGEMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLE 204
            GH H   +G AT  EM +A LP+A+RDSCAHLLIPLNKCR+   YLPW+C HERH YE CQY E
Sbjct:   14 GHGHEDPKGPATREEMTAARLPLAYRDSCAHLLIPLNKCRQKEWYLPWKCDHERHSYEGCQYAE 77
[Close]
BLAST of mRNA_F-serratus_M_contig722.18467.1 vs. uniprot
Match: A0A0G4N0K7_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4N0K7_9PEZI)

HSP 1 Score: 92.0 bits (227), Expect = 6.050e-23
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   16 GHDHGMEGKATEGEMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLE 204
            G D+   G AT  EM  A LP+A+RDSCAHLLIPLN+CR  T YLPW+CS ERH YEKCQY E
Sbjct:    2 GSDNAPTGPATREEMREARLPLAYRDSCAHLLIPLNRCRTETWYLPWKCSDERHGYEKCQYEE 64
[Close]
BLAST of mRNA_F-serratus_M_contig722.18467.1 vs. uniprot
Match: UPI001B370808 (uncharacterized protein n=1 Tax=Cryphonectria parasitica EP155 TaxID=660469 RepID=UPI001B370808)

HSP 1 Score: 92.0 bits (227), Expect = 6.570e-23
Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   13 GGHDHGME--GKATEGEMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLE 204
            GGHD   E   KAT  EM  A LPMA+RDSCA LLIPLN+CR  T YLPW+C  ERH YEKCQY+E
Sbjct:    2 GGHDDSFEMPQKATREEMRDAKLPMAYRDSCASLLIPLNRCRFETYYLPWKCEQERHTYEKCQYVE 67
[Close]
BLAST of mRNA_F-serratus_M_contig722.18467.1 vs. uniprot
Match: A0A517LK83_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Venturia effusa TaxID=50376 RepID=A0A517LK83_9PEZI)

HSP 1 Score: 91.7 bits (226), Expect = 1.340e-22
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 ETMGGGHDHGME-GKATEGEMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLE 204
            + +G GH H    G AT  +M +A LPMA+RDSCAHLLIPLN+CR+   YLPW+C +ERH YEKCQY E
Sbjct:    9 DAVGLGHGHDTPTGPATSEQMSAARLPMAYRDSCAHLLIPLNRCRQAEYYLPWKCENERHTYEKCQYEE 77
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig722.18467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ56_ECTSI2.270e-3583.33NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0G4MZR7_9PEZI3.000e-2366.67NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
F0XYL9_AURAN4.190e-2372.22NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
I1S5X9_GIBZE4.380e-2372.73NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A8H4LWB4_9HYPO4.380e-2370.91NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
G9MJU7_HYPVG4.380e-2369.35NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A6A6UGI8_9PEZI4.680e-2365.63NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0G4N0K7_9PEZI6.050e-2366.67NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
UPI001B3708086.570e-2366.67uncharacterized protein n=1 Tax=Cryphonectria para... [more]
A0A517LK83_9PEZI1.340e-2260.87NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig722contigF-serratus_M_contig722:37937..38143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue2.6e-26
Seed eggNOG ortholog2880.D7FZ56
Preferred nameNDUFB7
KEGG koko:K03963,ko:K04498
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04714,ko04720,ko04723,ko04916,ko04919,ko04922,ko04932,ko05010,ko05012,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map00190,map01100,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04714,map04720,map04723,map04916,map04919,map04922,map04932,map05010,map05012,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG ModuleM00147
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005758,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009853,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.NADH dehydrogenase (quinone) activity
EggNOG OGsKOG3468@1,KOG3468@2759
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03036
Exons1
Model size207
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932209.6879454-CDS-F-serratus_M_contig722:37936..381371622932209.6879454-CDS-F-serratus_M_contig722:37936..38137Fucus serratus maleCDSF-serratus_M_contig722 37937..38137 -
1690964199.7483673-CDS-F-serratus_M_contig722:37936..381371690964199.7483673-CDS-F-serratus_M_contig722:37936..38137Fucus serratus maleCDSF-serratus_M_contig722 37937..38137 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932209.7151895-UTR-F-serratus_M_contig722:38137..381431622932209.7151895-UTR-F-serratus_M_contig722:38137..38143Fucus serratus maleUTRF-serratus_M_contig722 38138..38143 -
1690964199.7618163-UTR-F-serratus_M_contig722:38137..381431690964199.7618163-UTR-F-serratus_M_contig722:38137..38143Fucus serratus maleUTRF-serratus_M_contig722 38138..38143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig722.18467.1prot_F-serratus_M_contig722.18467.1Fucus serratus malepolypeptideF-serratus_M_contig722 37937..38137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig722.18467.1

>prot_F-serratus_M_contig722.18467.1 ID=prot_F-serratus_M_contig722.18467.1|Name=mRNA_F-serratus_M_contig722.18467.1|organism=Fucus serratus male|type=polypeptide|length=67bp
MGGGHDHGMEGKATEGEMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPW
ECSHERHIYEKCQYLE*
back to top

mRNA from alignment at F-serratus_M_contig722:37937..38143-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig722.18467.1 ID=mRNA_F-serratus_M_contig722.18467.1|Name=mRNA_F-serratus_M_contig722.18467.1|organism=Fucus serratus male|type=mRNA|length=207bp|location=Sequence derived from alignment at F-serratus_M_contig722:37937..38143- (Fucus serratus male)
GAGACGATGGGCGGCGGTCACGACCACGGAATGGAGGGCAAGGCGACGGA
GGGAGAGATGATCTCGGCAGGTCTGCCCATGGCCTTCCGCGACTCTTGCG
CGCACCTTCTCATCCCGCTCAACAAGTGCCGAAGGGGTACGATGTACCTA
CCATGGGAGTGCTCGCACGAGCGCCACATCTACGAGAAGTGCCAGTACCT
TGAGTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig722:37937..38143-

>mRNA_F-serratus_M_contig722.18467.1 ID=mRNA_F-serratus_M_contig722.18467.1|Name=mRNA_F-serratus_M_contig722.18467.1|organism=Fucus serratus male|type=CDS|length=402bp|location=Sequence derived from alignment at F-serratus_M_contig722:37937..38143- (Fucus serratus male)
ATGGGCGGCGGTCACGACCACGGAATGGAGGGCAAGGCGACGGAGGGAGA
GATGATCTCGGCAGGTCTGCCCATGGCCTTCCGCGACTCTTGCGCGCACC
TTCTCATCCCGCTCAACAAGTGCCGAAGGGGTACGATGTACCTACCATGG
GAGTGCTCGCACGAGCGCCACATCTACGAGAAGTGCCAGTACCTTGAGTG
AATGGGCGGCGGTCACGACCACGGAATGGAGGGCAAGGCGACGGAGGGAG
AGATGATCTCGGCAGGTCTGCCCATGGCCTTCCGCGACTCTTGCGCGCAC
CTTCTCATCCCGCTCAACAAGTGCCGAAGGGGTACGATGTACCTACCATG
GGAGTGCTCGCACGAGCGCCACATCTACGAGAAGTGCCAGTACCTTGAGT
GA
back to top