mRNA_F-serratus_M_contig7212.18464.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7212.18464.1
Unique NamemRNA_F-serratus_M_contig7212.18464.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7212.18464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7212contigF-serratus_M_contig7212:6481..7052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932209.48479-UTR-F-serratus_M_contig7212:6480..67401622932209.48479-UTR-F-serratus_M_contig7212:6480..6740Fucus serratus maleUTRF-serratus_M_contig7212 6481..6740 +
1690964199.6745934-UTR-F-serratus_M_contig7212:6480..67401690964199.6745934-UTR-F-serratus_M_contig7212:6480..6740Fucus serratus maleUTRF-serratus_M_contig7212 6481..6740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932209.5093234-CDS-F-serratus_M_contig7212:6740..70521622932209.5093234-CDS-F-serratus_M_contig7212:6740..7052Fucus serratus maleCDSF-serratus_M_contig7212 6741..7052 +
1690964199.687475-CDS-F-serratus_M_contig7212:6740..70521690964199.687475-CDS-F-serratus_M_contig7212:6740..7052Fucus serratus maleCDSF-serratus_M_contig7212 6741..7052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7212.18464.1prot_F-serratus_M_contig7212.18464.1Fucus serratus malepolypeptideF-serratus_M_contig7212 6741..7052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7212.18464.1

>prot_F-serratus_M_contig7212.18464.1 ID=prot_F-serratus_M_contig7212.18464.1|Name=mRNA_F-serratus_M_contig7212.18464.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MYVYSVYNALQVWLIGRYYLYLEYWYLISQTFLLPSRSQCLNKPIFQAYA
QVRRLAPRGTEKPSALPLDPSHRYAALCARPAPYYPHTSKPSVARWIYHV
KESP
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mRNA from alignment at F-serratus_M_contig7212:6481..7052+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7212.18464.1 ID=mRNA_F-serratus_M_contig7212.18464.1|Name=mRNA_F-serratus_M_contig7212.18464.1|organism=Fucus serratus male|type=mRNA|length=572bp|location=Sequence derived from alignment at F-serratus_M_contig7212:6481..7052+ (Fucus serratus male)
TTTGACAAGGGTTGCATTGCTTATAGAAAAATCTGAATACATCTAAACCT
TAGCATTCACCCATCAGGGGACAAACATGTCAGATCTCACGTGTGTCAGG
TGGTGAGCAACGGTTGGGAACCTAGGAGCCGGACCGTGCACGCTGAACAT
AGCAACTACCACCTCTTGGCGTTCCAGTATATATGCAAGGAGTGCAAGAG
AAACAAGTAAGATGTACATTTTTACTCGAAATGTAGAGTCTATAGCGCTT
TCTCACATCAATGTACGTCTACAGCGTCTACAATGCTCTACAAGTGTGGT
TAATAGGGCGATACTATTTATACCTCGAGTATTGGTATCTTATATCGCAA
ACATTTCTTCTCCCGTCTCGTTCACAATGCTTGAACAAACCGATCTTCCA
GGCGTACGCACAGGTTCGCCGGTTGGCACCCCGAGGTACAGAAAAGCCTT
CCGCGCTACCTCTTGATCCCAGCCATCGTTATGCCGCGCTCTGCGCTCGA
CCGGCGCCTTATTACCCGCATACGTCAAAGCCTTCTGTCGCGCGGTGGAT
TTACCACGTTAAGGAATCACCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig7212:6481..7052+

>mRNA_F-serratus_M_contig7212.18464.1 ID=mRNA_F-serratus_M_contig7212.18464.1|Name=mRNA_F-serratus_M_contig7212.18464.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig7212:6481..7052+ (Fucus serratus male)
ATGTACGTCTACAGCGTCTACAATGCTCTACAAGTGTGGTTAATAGGGCG
ATACTATTTATACCTCGAGTATTGGTATCTTATATCGCAAACATTTCTTC
TCCCGTCTCGTTCACAATGCTTGAACAAACCGATCTTCCAGGCGTACGCA
CAGGTTCGCCGGTTGGCACCCCGAGGTACAGAAAAGCCTTCCGCGCTACC
TCTTGATCCCAGCCATCGTTATGCCGCGCTCTGCGCTCGACCGGCGCCTT
ATTACCCGCATACGTCAAAGCCTTCTGTCGCGCGGTGGATTTACCACGTT
AAGGAATCACCTATGTACGTCTACAGCGTCTACAATGCTCTACAAGTGTG
GTTAATAGGGCGATACTATTTATACCTCGAGTATTGGTATCTTATATCGC
AAACATTTCTTCTCCCGTCTCGTTCACAATGCTTGAACAAACCGATCTTC
CAGGCGTACGCACAGGTTCGCCGGTTGGCACCCCGAGGTACAGAAAAGCC
TTCCGCGCTACCTCTTGATCCCAGCCATCGTTATGCCGCGCTCTGCGCTC
GACCGGCGCCTTATTACCCGCATACGTCAAAGCCTTCTGTCGCGCGGTGG
ATTTACCACGTTAAGGAATCACCT
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