mRNA_F-serratus_M_contig720.18433.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig720.18433.1
Unique NamemRNA_F-serratus_M_contig720.18433.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig720.18433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig720contigF-serratus_M_contig720:16830..18232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size870
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig720.18433.1prot_F-serratus_M_contig720.18433.1Fucus serratus malepolypeptideF-serratus_M_contig720 17159..18012 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932204.0307612-UTR-F-serratus_M_contig720:16829..171581622932204.0307612-UTR-F-serratus_M_contig720:16829..17158Fucus serratus maleUTRF-serratus_M_contig720 16830..17158 -
1690964197.090528-UTR-F-serratus_M_contig720:16829..171581690964197.090528-UTR-F-serratus_M_contig720:16829..17158Fucus serratus maleUTRF-serratus_M_contig720 16830..17158 -
1622932204.13441-UTR-F-serratus_M_contig720:18012..182321622932204.13441-UTR-F-serratus_M_contig720:18012..18232Fucus serratus maleUTRF-serratus_M_contig720 18013..18232 -
1690964197.124905-UTR-F-serratus_M_contig720:18012..182321690964197.124905-UTR-F-serratus_M_contig720:18012..18232Fucus serratus maleUTRF-serratus_M_contig720 18013..18232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932204.0594833-CDS-F-serratus_M_contig720:17158..173181622932204.0594833-CDS-F-serratus_M_contig720:17158..17318Fucus serratus maleCDSF-serratus_M_contig720 17159..17318 -
1690964197.1012602-CDS-F-serratus_M_contig720:17158..173181690964197.1012602-CDS-F-serratus_M_contig720:17158..17318Fucus serratus maleCDSF-serratus_M_contig720 17159..17318 -
1622932204.1160192-CDS-F-serratus_M_contig720:17851..180121622932204.1160192-CDS-F-serratus_M_contig720:17851..18012Fucus serratus maleCDSF-serratus_M_contig720 17852..18012 -
1690964197.111041-CDS-F-serratus_M_contig720:17851..180121690964197.111041-CDS-F-serratus_M_contig720:17851..18012Fucus serratus maleCDSF-serratus_M_contig720 17852..18012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig720.18433.1

>prot_F-serratus_M_contig720.18433.1 ID=prot_F-serratus_M_contig720.18433.1|Name=mRNA_F-serratus_M_contig720.18433.1|organism=Fucus serratus male|type=polypeptide|length=107bp
MDMTSLKDLITSALPLPRSVTGEFWRAYVTRNEVMIYPLELFAALAIQSH
GLSREKAIFFFDMFDFGGREEISYDDVAICISTVVGAFSKVASVWVLLTT
SRLSAS*
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mRNA from alignment at F-serratus_M_contig720:16830..18232-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig720.18433.1 ID=mRNA_F-serratus_M_contig720.18433.1|Name=mRNA_F-serratus_M_contig720.18433.1|organism=Fucus serratus male|type=mRNA|length=1403bp|location=Sequence derived from alignment at F-serratus_M_contig720:16830..18232- (Fucus serratus male)
TCGATGCATGTTTTCATGCCACCCCTCACGATGTAACCTCCTGGGATCTG
CAACACGTGAAAACACTCCACGCCAAGTTTAGGGTCAGTCGATGGAAAGA
TAACAATGTACCAAGTTGTTATTGTTTGTTGGTTCGTACTCCATCGATAC
TTTGATTTCCGTCAGGGCCATAAACTCGGCGACTCTGCTCCCCCTACAGG
ATGATGGTTACGAATTTGGTATGGACATGACATCGCTGAAAGATCTCATT
ACCTCGGCGCTACCACTTCCTCGGAGTGTCACGGGGGAATTTTGGAGGGC
GTACGTCACTCGCAATGAAGTTATGATTTACCCTCTGGAGCTCTTCGCTG
CGCTGGCGATTCAAAGCCACGGTCTCTCCAGGTACATGCGGGGTGTTTAT
CCGGCGTGGAAGCGGAAATTGCACCGATTGTTGTATCAATATAGTATAGG
TACAATACACATCCAAGAGTGGGACTACTAGTCTGTTATTGTTAATAATA
GCCTGCGGGTGCACAGCGTCTGGTCGAACAGACTATGCTGAAAAAAAAAA
CTATTGACGAGAGTGTTCGAAACCGCTATATAGTAAAAGACGATAAAATA
ATTACCAGATATTGTAAAACCGCGAGATAATTGGGATGGCTATGGAACTA
CCCTCCCCCGCCGCGCGCCCAACGTTGACTGCAGTTTAATGCAAGAGTGC
CATGTTTATAAAATTACCTACTGGTACTGTAATACTGTAGATCAGTCTAT
ACAACCACCCCCCCTCCCCCCCCGATATAAACGAAACAAAATCCCCCCAA
AGAGATACCTTGTGCGTTTGCCTGGGTGGAGTTTGTGAACGCGGGTGGAA
GCCATGCTTTCGAAGCTCTCTCTTGCGAGCTTATCGTGGCCTCGACCGGT
GCGTGCGCTGCCAGGGAGAAGGCGATCTTCTTTTTTGACATGTTCGACTT
CGGAGGGCGCGAGGAGATTTCGTACGATGATGTGGCCATCTGTATCTCGA
CTGTGGTGGGGGCGTTTTCCAAGGTGGCGTCGGTTTGGGTGTTGTTGACC
ACGTCGCGGTTGTCCGCATCGTAGGCCTTTTTGAAGGGTAGCATTTGCCC
CCGTGCAAACTCGTGATATCGTATATTATGTCGTATTGATCAATATAATA
GTGTGCAAGATGTCCAGAGAAAAACGGTTTTGTTTATCACTTTAGATTCG
CGCAGGATCGCAACGTTAACCAGGGCACTCGGGGTTGCTGAGAGAATTCG
CGACTGCCACTCCGCCCCATCAAAGGAGACGGTTCTATACTCATCTAGAA
GGAAACAGCGATACGCATAACATATAAAAAGCGGTATCACAAGTGTCGTT
GATTACGAATTATTATTAGTAACATCTGAGATGCATGTTTCAACTTTATT
TTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig720:16830..18232-

>mRNA_F-serratus_M_contig720.18433.1 ID=mRNA_F-serratus_M_contig720.18433.1|Name=mRNA_F-serratus_M_contig720.18433.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig720:16830..18232- (Fucus serratus male)
ATGGACATGACATCGCTGAAAGATCTCATTACCTCGGCGCTACCACTTCC
TCGGAGTGTCACGGGGGAATTTTGGAGGGCGTACGTCACTCGCAATGAAG
TTATGATTTACCCTCTGGAGCTCTTCGCTGCGCTGGCGATTCAAAGCCAC
GGTCTCTCCAGATGGACATGACATCGCTGAAAGATCTCATTACCTCGGCG
CTACCACTTCCTCGGAGTGTCACGGGGGAATTTTGGAGGGCGTACGTCAC
TCGCAATGAAGTTATGATTTACCCTCTGGAGCTCTTCGCTGCGCTGGCGA
TTCAAAGCCACGGTCTCTCCAGGGAGAAGGCGATCTTCTTTTTTGACATG
TTCGACTTCGGAGGGCGCGAGGAGATTTCGTACGATGATGTGGCCATCTG
TATCTCGACTGTGGTGGGGGCGTTTTCCAAGGTGGCGTCGGTTTGGGTGT
TGTTGACCACGTCGCGGTTGTCCGCATCGTAGGGAGAAGGCGATCTTCTT
TTTTGACATGTTCGACTTCGGAGGGCGCGAGGAGATTTCGTACGATGATG
TGGCCATCTGTATCTCGACTGTGGTGGGGGCGTTTTCCAAGGTGGCGTCG
GTTTGGGTGTTGTTGACCACGTCGCGGTTGTCCGCATCGTAG
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