mRNA_F-serratus_M_contig720.18431.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig720.18431.1
Unique NamemRNA_F-serratus_M_contig720.18431.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig720.18431.1 vs. uniprot
Match: D7FNH5_ECTSI (Arf-GAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 4.030e-14
Identity = 76/157 (48.41%), Postives = 90/157 (57.32%), Query Frame = 3 
Query:  330 DQPVKLYKAEDEKQSGS-HKPMVGFGAXXXXXXXXXXXXXXDGSRDVDDGTSYSGGSSSGGRGWG-AKEGSGVDDLLGSDWRDEPQPSQ-------ASRARSQSPPSQQTLYPSALPQAPASAGAPSLKKTPSEAAA--------EEDDFFGSFGVK 749
            D+P+KLYKA DE   G+ HKPMVGFGA    XXXXXXXXXX                         A+EGSG+DDLLGS WRDEP P+         +R +S SPP  Q  Y S+LP+APAS GAP+ +KT +            E+DDFFGSFGVK
Sbjct:  326 DEPLKLYKAGDEAADGARHKPMVGFGAGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQEGSGIDDLLGSGWRDEPTPTPPLPPAAAVARPQSTSPPPSQPSYGSSLPKAPASVGAPASRKTATXXXXXXXXXXXXEDDDFFGSFGVK 482
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig720.18431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNH5_ECTSI4.030e-1448.41Arf-GAP domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig720contigF-serratus_M_contig720:5979..8173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.8e-14
Seed eggNOG ortholog2880.D7FNH5
KEGG koko:K12492
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0704@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons3
Model size789
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig720.18431.1prot_F-serratus_M_contig720.18431.1Fucus serratus malepolypeptideF-serratus_M_contig720 6275..8136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932202.9801254-UTR-F-serratus_M_contig720:5978..62741622932202.9801254-UTR-F-serratus_M_contig720:5978..6274Fucus serratus maleUTRF-serratus_M_contig720 5979..6274 +
1690964196.7971623-UTR-F-serratus_M_contig720:5978..62741690964196.7971623-UTR-F-serratus_M_contig720:5978..6274Fucus serratus maleUTRF-serratus_M_contig720 5979..6274 +
1622932203.079854-UTR-F-serratus_M_contig720:8136..81731622932203.079854-UTR-F-serratus_M_contig720:8136..8173Fucus serratus maleUTRF-serratus_M_contig720 8137..8173 +
1690964196.8356235-UTR-F-serratus_M_contig720:8136..81731690964196.8356235-UTR-F-serratus_M_contig720:8136..8173Fucus serratus maleUTRF-serratus_M_contig720 8137..8173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932203.0010276-CDS-F-serratus_M_contig720:6274..65211622932203.0010276-CDS-F-serratus_M_contig720:6274..6521Fucus serratus maleCDSF-serratus_M_contig720 6275..6521 +
1690964196.8097727-CDS-F-serratus_M_contig720:6274..65211690964196.8097727-CDS-F-serratus_M_contig720:6274..6521Fucus serratus maleCDSF-serratus_M_contig720 6275..6521 +
1622932203.027344-CDS-F-serratus_M_contig720:6847..69601622932203.027344-CDS-F-serratus_M_contig720:6847..6960Fucus serratus maleCDSF-serratus_M_contig720 6848..6960 +
1690964196.8190167-CDS-F-serratus_M_contig720:6847..69601690964196.8190167-CDS-F-serratus_M_contig720:6847..6960Fucus serratus maleCDSF-serratus_M_contig720 6848..6960 +
1622932203.0541358-CDS-F-serratus_M_contig720:8040..81361622932203.0541358-CDS-F-serratus_M_contig720:8040..8136Fucus serratus maleCDSF-serratus_M_contig720 8041..8136 +
1690964196.8272827-CDS-F-serratus_M_contig720:8040..81361690964196.8272827-CDS-F-serratus_M_contig720:8040..8136Fucus serratus maleCDSF-serratus_M_contig720 8041..8136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig720.18431.1

>prot_F-serratus_M_contig720.18431.1 ID=prot_F-serratus_M_contig720.18431.1|Name=mRNA_F-serratus_M_contig720.18431.1|organism=Fucus serratus male|type=polypeptide|length=152bp
MKCALTMSPGRDQPVKLYKAEDEKQSGSHKPMVGFGAGAGAAAAAAAAAS
ADGSRDVDDGTSYSGGSSSGGRGWGAKEGSGVDDLLGSDWRDEPQPSQAS
RARSQSPPSQQTLYPSALPQAPASAGAPSLKKTPSEAAAEEDDFFGSFGV
K*
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mRNA from alignment at F-serratus_M_contig720:5979..8173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig720.18431.1 ID=mRNA_F-serratus_M_contig720.18431.1|Name=mRNA_F-serratus_M_contig720.18431.1|organism=Fucus serratus male|type=mRNA|length=2195bp|location=Sequence derived from alignment at F-serratus_M_contig720:5979..8173+ (Fucus serratus male)
GGGTACTGTTGAGCAGGCGCTTAGGACGAGGTTGGGGGGAGGGGGAGATG
AGTAGCCCGCAAACGAATGTTACGTTTGCTATTGGCACCTCGTCGCTGGT
TTGGTTCCCTCCCGTTGTACATCCAGTAAGGATTCAGTCTGAAACGTACG
CTCTATCATTCGCTTCGCGGTGGCGATTTGCTCGTTCTCTTGAAGCGAAT
TAAGTGGACTTCTAGAAACACGCTGCAAGCGAGATACACAAAAGCCTGAA
ATGTCCTCTGCCTTGCCTCCCCCCTCTCCCCTTCCCTTGAAATCAAATGA
AATGCGCCTTGACAATGTCGCCGGGTAGGGACCAGCCGGTGAAACTGTAC
AAAGCAGAAGACGAGAAGCAATCTGGATCGCACAAACCCATGGTCGGCTT
CGGCGCGGGCGCGGGCGCCGCTGCCGCGGCTGCTGCAGCGGCATCAGCCG
ACGGTTCGCGCGACGTAGACGACGGGACGAGTTACTCCGGCGGCAGCAGC
TCGGGTGGTAGAGGCTGGGGGGCGAAAGAAGGCAGCGGTGTTGGTGAGTA
TGGATGGTCTAATTCGCACAGTTTTTTCCGTGACAAGCTTATCTTGAAAA
CTATTTTTCCCCTTATTTTTCCCGTATGGTGTACAGAATTGGCTCCAGGT
TTCCATGGGCACAAATTATGGAATGGCGACAACGGTGGTGCGCGTCTGTT
TTTTTGTGGGGTGGTTGTCGAACGTGAACGGCGCGCGAACAAGAAAGGCA
TCGGTCGCCCTCCCGTTCGCGATCATGACAAATACTATACATGGTATCGT
TTTTGTTCACCATGCCCGCCGCTCGATTCCTGCACTTGGTTTCCGTTGCG
GGGACGCGTGTTTTGGCAGACGATCTGCTTGGATCGGATTGGCGAGATGA
GCCGCAGCCATCGCAGGCATCCCGGGCGCGAAGCCAATCTCCGCCGTCGC
AGCAAACATTGTACCCATCAGCGCTCCCTCAGGTGTGAAGCGGCGACAAC
GGTAGGCGAAATCTCGCTGGCAAGCAGAAAACTGGTAGGGTACTCAACAT
GGAAAACAGTAGCACGTCTCAGACAGAGTATATATGTACCTGGTATGTAT
ACATGTATGTATGTGTGCATGTATGGTCAACACATATAGCAAGGGTAGGG
ATCAACCAGGGTAAGGTTGCCAATCCTGCTCGGTGTCAACTGAACAGGAA
AATGAGCATTTCCCTGTCCCCGTGCGCGCCTGAGAATTTGACTCGTAAGA
CGGGTTCGGCAGTCCCGTCCCGCGTCGGCCTGCTCGTCTCCATACTCAGG
CTGAATCTGATGCTTACTTACGGGAGTCCTCCCTAGATCTGCGGCTGCGT
CCATTTATTTATTTTAAAACCGCCGTACGCCATCGGGTCAGTCCCGAGTT
TGTCGGGTCACGCAATTGCGGCGTTCACTGCCGAGAGTCCGCCAGCATGG
GGCCAGTAAGCCTCAAGGTAGTTCCAAACGGGTGCTGCCTTGGTAGGTAG
GTCACCGTGGACCAATTAATATGCGCTTCTCTTTCCCACACCCACTATTG
GTATGAAGTGGGCATGTTAAAAGTCCCCTCGGTACAAAATATACATTCAC
TTACTGTGTTCATTGTTTCACGTTGGAAACTATCCATCCATACCTCAAGA
TCGATTCACGTCTTTTTTTACGTCATACTTCTTGTCCAGCAGTCGGGGCT
GCGAAATCCCCATCCCTCGGCGCTAGCCCGTTCGTTTCTTTTCTCTGCGT
GCATTGGCTGGTGCTAGGGATATGATGTGCAGTGCTTGGAATGGTGGAAA
AAAAATGTATCAAGGCATGTCGCGTTTGTTGGCTGACCTCTATGGACTGC
TTGCTATACACCTGTATGCGAGGAGCCTCCTTTGTCCATATTAGCTATAA
AATATACCCTGGTACTTGTACGTATTATGTATTCAGGACCAATGGCGTTT
TTACGTACAGTTAATGTTAGGACGTCCCCACTTGTTGCTTGCCCGCGTCT
CCGGACGTGTGCCGCCTGCTCGCCTGCTTTCTTGCCCCGTTACATGCGTA
TGGTCTCGCAAGGCGCCCGCCTCGGCAGGCGCCCCGTCGCTCAAGAAGAC
CCCGTCGGAGGCTGCGGCGGAAGAGGATGATTTTTTTGGAAGCTTCGGAG
TCAAGTAAAGGCGAAGATGGGGGAGGGAAGAGGAAGGAAAGAAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig720:5979..8173+

>mRNA_F-serratus_M_contig720.18431.1 ID=mRNA_F-serratus_M_contig720.18431.1|Name=mRNA_F-serratus_M_contig720.18431.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig720:5979..8173+ (Fucus serratus male)
ATGAAATGCGCCTTGACAATGTCGCCGGGTAGGGACCAGCCGGTGAAACT
GTACAAAGCAGAAGACGAGAAGCAATCTGGATCGCACAAACCCATGGTCG
GCTTCGGCGCGGGCGCGGGCGCCGCTGCCGCGGCTGCTGCAGCGGCATCA
GCCGACGGTTCGCGCGACGTAGACGACGGGACGAGTTACTCCGGCGGCAG
CAGCTCGGGTGGTAGAGGCTGGGGGGCGAAAGAAGGCAGCGGTGTTGATG
AAATGCGCCTTGACAATGTCGCCGGGTAGGGACCAGCCGGTGAAACTGTA
CAAAGCAGAAGACGAGAAGCAATCTGGATCGCACAAACCCATGGTCGGCT
TCGGCGCGGGCGCGGGCGCCGCTGCCGCGGCTGCTGCAGCGGCATCAGCC
GACGGTTCGCGCGACGTAGACGACGGGACGAGTTACTCCGGCGGCAGCAG
CTCGGGTGGTAGAGGCTGGGGGGCGAAAGAAGGCAGCGGTGTTGACGATC
TGCTTGGATCGGATTGGCGAGATGAGCCGCAGCCATCGCAGGCATCCCGG
GCGCGAAGCCAATCTCCGCCGTCGCAGCAAACATTGTACCCATCAGCGCT
CCCTCAGACGATCTGCTTGGATCGGATTGGCGAGATGAGCCGCAGCCATC
GCAGGCATCCCGGGCGCGAAGCCAATCTCCGCCGTCGCAGCAAACATTGT
ACCCATCAGCGCTCCCTCAGGCGCCCGCCTCGGCAGGCGCCCCGTCGCTC
AAGAAGACCCCGTCGGAGGCTGCGGCGGAAGAGGATGATTTTTTTGGAAG
CTTCGGAGTCAAGTAAGCGCCCGCCTCGGCAGGCGCCCCGTCGCTCAAGA
AGACCCCGTCGGAGGCTGCGGCGGAAGAGGATGATTTTTTTGGAAGCTTC
GGAGTCAAGTAA
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