mRNA_F-serratus_M_contig1240.1842.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: D7G8H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H6_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 1.080e-24 Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 1
Query: 4 VVSSDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMFKKKNE 195
VVSSDLPP+WVPLAV VL +GIGLLQGSLGDVM+DEAKLG +SGARAAKQS+RDR MFKKK++
Sbjct: 106 VVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKDQ 169
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A836CD09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD09_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 2.230e-17 Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1
Query: 13 SDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMFKKK 189
+LPP+WVPL + AV++ GIG Q SLG+VM DEAKLGG+SGARAAKQS+R RSMFK+K
Sbjct: 48 DELPPMWVPLVLGAVVLAGIGAQQLSLGNVMDDEAKLGGLSGARAAKQSARGRSMFKRK 106
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A6U1XMR7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1XMR7_TRICV) HSP 1 Score: 67.4 bits (163), Expect = 1.630e-12 Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 13 SDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMFKKK 189
++LPP+WVP+ ++ G+GLL GSLGDVMSDEA LG MSGA+A K+ R RS + KK
Sbjct: 95 AELPPVWVPIVFAIAILGGVGLLTGSLGDVMSDEASLGLMSGAQAKKEMERSRSSYFKK 153
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A7R9ZRN9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRN9_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 7.480e-11 Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 13 SDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMFKKK 189
++LPP+WVP VL+VG+GLL GSLG+V+ +E+ LG SGARA K+ R RS + KK
Sbjct: 65 AELPPVWVPAVFALVLLVGVGLLTGSLGNVIDEESMLGLQSGARAKKEIERSRSSYFKK 123
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A7S3Y243_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y243_HETAK) HSP 1 Score: 65.1 bits (157), Expect = 1.100e-10 Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 4 VVSSDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSR 165
V +LPP+WVPLA AVL VGIG+LQ SLGDVM EA LG SGARA K+++R
Sbjct: 459 VAKEELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTR 512
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A6U1Q394_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q394_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.000e-8 Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 19 LPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMF 180
LPP WVP+ V L+ G+GLLQ SLG+V DEA LG SGARA K+S+R++
Sbjct: 89 LPPFWVPVGVAIALLGGVGLLQLSLGNVADDEAMLGSASGARARKESTRNKKFL 142
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A6U4CKI4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CKI4_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.000e-8 Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 10 SSDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARA-AKQSSRDRSMF 180
++DLPP+WVPL V A+L+VGIG LQ LGDV +EA L G +A + + SRDRS F
Sbjct: 79 TADLPPVWVPLGVAALLLVGIGALQLDLGDVFGEEALLDNAIGDKAKSTRESRDRSYF 136
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A7S2SFC9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFC9_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.100e-8 Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 1
Query: 1 AVVSSDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSR-DRSMFKKK 189
A DLPP +P+A A + VG+GLLQGSLGDV EA LG SGA A K++ R RS FK K
Sbjct: 81 AAAPPDLPPPAIPVAFAAAIFVGVGLLQGSLGDVYGQEADLGMSSGANARKEAERKSRSYFKDK 144
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A1Z5K2E8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2E8_FISSO) HSP 1 Score: 56.2 bits (134), Expect = 1.380e-8 Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 1 AVVSSDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMFKKK 189
AV ++LPP +VP+ V L+VG+G+L SLG+VM +EA LG SGARA K+ R RS + KK
Sbjct: 45 AVELAELPPPYVPVLVGLGLLVGVGVLTSSLGNVMDEEASLGMQSGARAKKEIERSRSSYFKK 107
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A7S2V989_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V989_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 3.080e-8 Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 13 SDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMFKKK 189
++LPP +VP L+VG+GLL GSLG+VM +EA LG SGARA K+ R RS + KK
Sbjct: 90 AELPPPYVPALFGVGLLVGVGLLTGSLGNVMDEEASLGMQSGARAKKEIERSRSSYFKK 148 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1240.1842.1 >prot_F-serratus_M_contig1240.1842.1 ID=prot_F-serratus_M_contig1240.1842.1|Name=mRNA_F-serratus_M_contig1240.1842.1|organism=Fucus serratus male|type=polypeptide|length=68bp AVVSSDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAback to top mRNA from alignment at F-serratus_M_contig1240:89857..90060- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1240.1842.1 ID=mRNA_F-serratus_M_contig1240.1842.1|Name=mRNA_F-serratus_M_contig1240.1842.1|organism=Fucus serratus male|type=mRNA|length=204bp|location=Sequence derived from alignment at F-serratus_M_contig1240:89857..90060- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1240:89857..90060- >mRNA_F-serratus_M_contig1240.1842.1 ID=mRNA_F-serratus_M_contig1240.1842.1|Name=mRNA_F-serratus_M_contig1240.1842.1|organism=Fucus serratus male|type=CDS|length=408bp|location=Sequence derived from alignment at F-serratus_M_contig1240:89857..90060- (Fucus serratus male)back to top |