mRNA_F-serratus_M_contig1240.1844.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1240.1844.1
Unique NamemRNA_F-serratus_M_contig1240.1844.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1240.1844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1240contigF-serratus_M_contig1240:138948..140129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size570
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1240.1844.1prot_F-serratus_M_contig1240.1844.1Fucus serratus malepolypeptideF-serratus_M_contig1240 139055..139966 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.9973762-UTR-F-serratus_M_contig1240:138947..1390541622929166.9973762-UTR-F-serratus_M_contig1240:138947..139054Fucus serratus maleUTRF-serratus_M_contig1240 138948..139054 +
1690962732.4159513-UTR-F-serratus_M_contig1240:138947..1390541690962732.4159513-UTR-F-serratus_M_contig1240:138947..139054Fucus serratus maleUTRF-serratus_M_contig1240 138948..139054 +
1622929167.0757024-UTR-F-serratus_M_contig1240:139966..1401291622929167.0757024-UTR-F-serratus_M_contig1240:139966..140129Fucus serratus maleUTRF-serratus_M_contig1240 139967..140129 +
1690962732.4704099-UTR-F-serratus_M_contig1240:139966..1401291690962732.4704099-UTR-F-serratus_M_contig1240:139966..140129Fucus serratus maleUTRF-serratus_M_contig1240 139967..140129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929167.0132732-CDS-F-serratus_M_contig1240:139054..1390981622929167.0132732-CDS-F-serratus_M_contig1240:139054..139098Fucus serratus maleCDSF-serratus_M_contig1240 139055..139098 +
1690962732.4359362-CDS-F-serratus_M_contig1240:139054..1390981690962732.4359362-CDS-F-serratus_M_contig1240:139054..139098Fucus serratus maleCDSF-serratus_M_contig1240 139055..139098 +
1622929167.0498781-CDS-F-serratus_M_contig1240:139339..1395261622929167.0498781-CDS-F-serratus_M_contig1240:139339..139526Fucus serratus maleCDSF-serratus_M_contig1240 139340..139526 +
1690962732.4502468-CDS-F-serratus_M_contig1240:139339..1395261690962732.4502468-CDS-F-serratus_M_contig1240:139339..139526Fucus serratus maleCDSF-serratus_M_contig1240 139340..139526 +
1622929167.0611405-CDS-F-serratus_M_contig1240:139897..1399661622929167.0611405-CDS-F-serratus_M_contig1240:139897..139966Fucus serratus maleCDSF-serratus_M_contig1240 139898..139966 +
1690962732.4580383-CDS-F-serratus_M_contig1240:139897..1399661690962732.4580383-CDS-F-serratus_M_contig1240:139897..139966Fucus serratus maleCDSF-serratus_M_contig1240 139898..139966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1240.1844.1

>prot_F-serratus_M_contig1240.1844.1 ID=prot_F-serratus_M_contig1240.1844.1|Name=mRNA_F-serratus_M_contig1240.1844.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MLHQPFQYCLRKGLSKTRGKALRLQPNQGRTGFPRERILFFCPFKRLFPA
KDLSGLTIMEVGKVIATTATGLVTALKDFPSCARGQTTVARLKGTFDAS*
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mRNA from alignment at F-serratus_M_contig1240:138948..140129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1240.1844.1 ID=mRNA_F-serratus_M_contig1240.1844.1|Name=mRNA_F-serratus_M_contig1240.1844.1|organism=Fucus serratus male|type=mRNA|length=1182bp|location=Sequence derived from alignment at F-serratus_M_contig1240:138948..140129+ (Fucus serratus male)
GACCGGAAACGATCAATTGGTCAGTATTTAACCTCTCAACGTCTGAAGAC
TTTTGTTTAACCACGCCAGTCGTGAACACAGTACCAGCGCCTAGTTCAAC
CTTGCTTATGCTTCATCAGCCCTTCCAGTACTGCCTACGAAAAGGACTCA
GGTGATATTAACCCTTTGGACTTAGTAACTCAAGTACAGTATTCAGTATA
ATGTAGGACGTAACCAGAATATAGACTGGCATAGCTAGAAACAGCAAAGA
TCTCATGAGCATCTCCAGCCTTGATGATAGCCCAAGGCGTAGAGCTAAGT
TTAGCTACAGGCTACCAAATCACTAACGACGATTAAATACATCACTTGCG
TGTCGCGACTCTCTCGAAAATTGCTGTCCACTCTCGAAGCAGTAAAACAA
GGGGGAAGGCTCTGCGTCTACAACCGAACCAAGGTCGTACGGGGTTTCCC
AGAGAAAGAATCCTGTTTTTTTGTCCCTTCAAGCGTTTGTTTCCCGCAAA
AGACTTAAGCGGATTGACAATCATGGAGGTGGGAAAAGTGATAGCTACGA
CCGCGACAGGTCTGGTGACGGCGTTGAAGGCAAGAACGGCGCTCATCTAT
TACATTATGCATTTCCCCTGTATACTTGTGTACCCGAGGATGTCCGAGGA
AGTGGTTGAGGTTGGGACAATCGTGAAGACCGATCGGTGGGAGGTTTCAA
TCGCGTGGTTACAGGCGGATGCGACACGACATGCCGTATCCAAGACAAGG
ACGACCAGAAGACCACTAAGAGGCAGTGGTTGTTAGCCGATGTGGGAGGG
GGGGGGGGGCGATGCAGCACTCGAGTCTCAGCAAGAACAACTAAATTGTC
ATTTTCGTTGATGGCCATACCCCCTTCGAGGTAGGAAAGTTTGTGAAGGT
TGATAGCGACACGATTACCTCGCTGACCGTTGGTTGCATGATCCGCCAAG
GACTTTCCGTCATGTGCAAGAGGCCAGACAACGGTGGCGAGATTGAAAGG
AACCTTCGACGCAAGCTGAATCAGCGAAGCTTCAATCATGAGCACAGACC
ACTAGACATGTCGCGGAACAACGGAGTGGCCGCGCGCACGCTTGGGCTGC
TACGTGAGAAGGCCATAGCCTTTCTGGAGGAACGACGACCTTGCCAAAAT
GTCGTGAGAAACGCTATGAGCTCAAGAAATAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1240:138948..140129+

>mRNA_F-serratus_M_contig1240.1844.1 ID=mRNA_F-serratus_M_contig1240.1844.1|Name=mRNA_F-serratus_M_contig1240.1844.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig1240:138948..140129+ (Fucus serratus male)
ATGCTTCATCAGCCCTTCCAGTACTGCCTACGAAAAGGACTCAGATGCTT
CATCAGCCCTTCCAGTACTGCCTACGAAAAGGACTCAGTAAAACAAGGGG
GAAGGCTCTGCGTCTACAACCGAACCAAGGTCGTACGGGGTTTCCCAGAG
AAAGAATCCTGTTTTTTTGTCCCTTCAAGCGTTTGTTTCCCGCAAAAGAC
TTAAGCGGATTGACAATCATGGAGGTGGGAAAAGTGATAGCTACGACCGC
GACAGGTCTGGTGACGGCGTTGAAGTAAAACAAGGGGGAAGGCTCTGCGT
CTACAACCGAACCAAGGTCGTACGGGGTTTCCCAGAGAAAGAATCCTGTT
TTTTTGTCCCTTCAAGCGTTTGTTTCCCGCAAAAGACTTAAGCGGATTGA
CAATCATGGAGGTGGGAAAAGTGATAGCTACGACCGCGACAGGTCTGGTG
ACGGCGTTGAAGGACTTTCCGTCATGTGCAAGAGGCCAGACAACGGTGGC
GAGATTGAAAGGAACCTTCGACGCAAGCTGAGACTTTCCGTCATGTGCAA
GAGGCCAGACAACGGTGGCGAGATTGAAAGGAACCTTCGACGCAAGCTGA
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