mRNA_F-serratus_M_contig719.18402.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18402.1
Unique NamemRNA_F-serratus_M_contig719.18402.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:313727..314613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size557
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932199.0812578-CDS-F-serratus_M_contig719:313726..3139451622932199.0812578-CDS-F-serratus_M_contig719:313726..313945Fucus serratus maleCDSF-serratus_M_contig719 313727..313945 -
1690964195.0256078-CDS-F-serratus_M_contig719:313726..3139451690964195.0256078-CDS-F-serratus_M_contig719:313726..313945Fucus serratus maleCDSF-serratus_M_contig719 313727..313945 -
1622932199.1022794-CDS-F-serratus_M_contig719:314277..3146131622932199.1022794-CDS-F-serratus_M_contig719:314277..314613Fucus serratus maleCDSF-serratus_M_contig719 314278..314613 -
1690964195.0440152-CDS-F-serratus_M_contig719:314277..3146131690964195.0440152-CDS-F-serratus_M_contig719:314277..314613Fucus serratus maleCDSF-serratus_M_contig719 314278..314613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18402.1prot_F-serratus_M_contig719.18402.1Fucus serratus malepolypeptideF-serratus_M_contig719 313727..314613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18402.1

>prot_F-serratus_M_contig719.18402.1 ID=prot_F-serratus_M_contig719.18402.1|Name=mRNA_F-serratus_M_contig719.18402.1|organism=Fucus serratus male|type=polypeptide|length=185bp
RVEVGSEAEGAADAEEVAVAPRLLLDDVRDKLQAVETDIEGEGQCDRQQL
SLLKGADITSIAQRETAARITELEGSLEAAEQDHEFFRKGMQERLEELGK
SLEEEDSGNDVPAALTTSQSENGTTKRFFAEVTQISEKERSDLERCLKQS
TDALREAKEKVRTLDLTLDQAIQGIAGQRSAATSA
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mRNA from alignment at F-serratus_M_contig719:313727..314613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18402.1 ID=mRNA_F-serratus_M_contig719.18402.1|Name=mRNA_F-serratus_M_contig719.18402.1|organism=Fucus serratus male|type=mRNA|length=887bp|location=Sequence derived from alignment at F-serratus_M_contig719:313727..314613- (Fucus serratus male)
CGGGTGGAGGTTGGATCAGAGGCGGAAGGAGCGGCCGATGCAGAGGAGGT
AGCTGTAGCTCCCAGACTACTACTAGATGATGTTAGAGACAAGCTCCAAG
CCGTCGAGACAGATATCGAGGGAGAAGGGCAGTGTGACAGGCAGCAGCTC
TCCCTTCTGAAGGGTGCAGACATTACATCAATTGCGCAGAGAGAGACCGC
AGCGCGAATCACCGAGCTAGAGGGTTCACTAGAGGCAGCCGAACAAGACC
ACGAGTTCTTCCGGAAGGGGATGCAAGAAAGGTTGGAGGAGCTCGGAAAG
TCTCTTGAGGAAGAAGACAGTGGGAATGATGTGCCGGTGTGTGTGTGTCC
ATGTGTTTGTAAATGAATTTATTAAATTACACATAACTGCGCAATCCGGT
CCTGTCATCCTATTCATACTATGCCACTCGCATTGATCCTCCCAGGGGGA
GGTCAATGGTTTGTGTGTGTGTGTGTGTGTTTGTTTGCAGGATGTCTCGC
GAGCATTCGGCCGGCAAGTTAATCCATTCACCTCATGTGCGTCCCAAACG
TTTTCTTCGCTGGCTCTCTAAGAAAAATTTTACTTACTGATGATGCCATC
AGACACGAGCTTCGCTAACACCAATCTCTCTCCTGACCCCACTGCTGGAC
TGCCAACATGCGATGAAGGCGGCTTTGACCACATCACAGAGTGAGAATGG
CACAACAAAGCGTTTCTTCGCCGAGGTGACTCAAATATCCGAGAAGGAGC
GGTCCGACCTGGAGCGTTGCCTCAAGCAGTCCACCGATGCGTTGAGGGAA
GCCAAAGAAAAGGTAAGGACGCTTGATCTTACGCTGGATCAGGCAATCCA
GGGAATAGCCGGACAGCGCTCTGCCGCCACATCTGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig719:313727..314613-

>mRNA_F-serratus_M_contig719.18402.1 ID=mRNA_F-serratus_M_contig719.18402.1|Name=mRNA_F-serratus_M_contig719.18402.1|organism=Fucus serratus male|type=CDS|length=1110bp|location=Sequence derived from alignment at F-serratus_M_contig719:313727..314613- (Fucus serratus male)
CGGGTGGAGGTTGGATCAGAGGCGGAAGGAGCGGCCGATGCAGAGGAGGT
AGCTGTAGCTCCCAGACTACTACTAGATGATGTTAGAGACAAGCTCCAAG
CCGTCGAGACAGATATCGAGGGAGAAGGGCAGTGTGACAGGCAGCAGCTC
TCCCTTCTGAAGGGTGCAGACATTACATCAATTGCGCAGAGAGAGACCGC
AGCGCGAATCACCGAGCTAGAGGGTTCACTAGAGGCAGCCGAACAAGACC
ACGAGTTCTTCCGGAAGGGGATGCAAGAAAGGTTGGAGGAGCTCGGAAAG
TCTCTTGAGGAAGAAGACAGTGGGAATGATGTGCCGCGGGTGGAGGTTGG
ATCAGAGGCGGAAGGAGCGGCCGATGCAGAGGAGGTAGCTGTAGCTCCCA
GACTACTACTAGATGATGTTAGAGACAAGCTCCAAGCCGTCGAGACAGAT
ATCGAGGGAGAAGGGCAGTGTGACAGGCAGCAGCTCTCCCTTCTGAAGGG
TGCAGACATTACATCAATTGCGCAGAGAGAGACCGCAGCGCGAATCACCG
AGCTAGAGGGTTCACTAGAGGCAGCCGAACAAGACCACGAGTTCTTCCGG
AAGGGGATGCAAGAAAGGTTGGAGGAGCTCGGAAAGTCTCTTGAGGAAGA
AGACAGTGGGAATGATGTGCCGGCGGCTTTGACCACATCACAGAGTGAGA
ATGGCACAACAAAGCGTTTCTTCGCCGAGGTGACTCAAATATCCGAGAAG
GAGCGGTCCGACCTGGAGCGTTGCCTCAAGCAGTCCACCGATGCGTTGAG
GGAAGCCAAAGAAAAGGTAAGGACGCTTGATCTTACGCTGGATCAGGCAA
TCCAGGGAATAGCCGGACAGCGCTCTGCCGCCACATCTGCGGCGGCTTTG
ACCACATCACAGAGTGAGAATGGCACAACAAAGCGTTTCTTCGCCGAGGT
GACTCAAATATCCGAGAAGGAGCGGTCCGACCTGGAGCGTTGCCTCAAGC
AGTCCACCGATGCGTTGAGGGAAGCCAAAGAAAAGGTAAGGACGCTTGAT
CTTACGCTGGATCAGGCAATCCAGGGAATAGCCGGACAGCGCTCTGCCGC
CACATCTGCG
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