mRNA_F-serratus_M_contig719.18395.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18395.1
Unique NamemRNA_F-serratus_M_contig719.18395.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:210136..213010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2063
Cds size1728
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18395.1prot_F-serratus_M_contig719.18395.1Fucus serratus malepolypeptideF-serratus_M_contig719 210453..212992 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932198.2252777-UTR-F-serratus_M_contig719:210135..2104521622932198.2252777-UTR-F-serratus_M_contig719:210135..210452Fucus serratus maleUTRF-serratus_M_contig719 210136..210452 +
1690964194.6019728-UTR-F-serratus_M_contig719:210135..2104521690964194.6019728-UTR-F-serratus_M_contig719:210135..210452Fucus serratus maleUTRF-serratus_M_contig719 210136..210452 +
1622932198.3209827-UTR-F-serratus_M_contig719:212992..2130101622932198.3209827-UTR-F-serratus_M_contig719:212992..213010Fucus serratus maleUTRF-serratus_M_contig719 212993..213010 +
1690964194.6601758-UTR-F-serratus_M_contig719:212992..2130101690964194.6601758-UTR-F-serratus_M_contig719:212992..213010Fucus serratus maleUTRF-serratus_M_contig719 212993..213010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932198.2424474-CDS-F-serratus_M_contig719:210452..2109281622932198.2424474-CDS-F-serratus_M_contig719:210452..210928Fucus serratus maleCDSF-serratus_M_contig719 210453..210928 +
1690964194.611677-CDS-F-serratus_M_contig719:210452..2109281690964194.611677-CDS-F-serratus_M_contig719:210452..210928Fucus serratus maleCDSF-serratus_M_contig719 210453..210928 +
1622932198.2558258-CDS-F-serratus_M_contig719:211467..2123401622932198.2558258-CDS-F-serratus_M_contig719:211467..212340Fucus serratus maleCDSF-serratus_M_contig719 211468..212340 +
1690964194.6260054-CDS-F-serratus_M_contig719:211467..2123401690964194.6260054-CDS-F-serratus_M_contig719:211467..212340Fucus serratus maleCDSF-serratus_M_contig719 211468..212340 +
1622932198.26844-CDS-F-serratus_M_contig719:212579..2128641622932198.26844-CDS-F-serratus_M_contig719:212579..212864Fucus serratus maleCDSF-serratus_M_contig719 212580..212864 +
1690964194.6380243-CDS-F-serratus_M_contig719:212579..2128641690964194.6380243-CDS-F-serratus_M_contig719:212579..212864Fucus serratus maleCDSF-serratus_M_contig719 212580..212864 +
1622932198.2996063-CDS-F-serratus_M_contig719:212898..2129921622932198.2996063-CDS-F-serratus_M_contig719:212898..212992Fucus serratus maleCDSF-serratus_M_contig719 212899..212992 +
1690964194.6492147-CDS-F-serratus_M_contig719:212898..2129921690964194.6492147-CDS-F-serratus_M_contig719:212898..212992Fucus serratus maleCDSF-serratus_M_contig719 212899..212992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18395.1

>prot_F-serratus_M_contig719.18395.1 ID=prot_F-serratus_M_contig719.18395.1|Name=mRNA_F-serratus_M_contig719.18395.1|organism=Fucus serratus male|type=polypeptide|length=576bp
MIETSSLPSPPSSCSPSKLPPPPLHLPPRPLWTTDLHRSPLNVTFTCLAH
CQAVVREAAIEVMCSLARLRPRTAFALYEKAIDGLERWKVCNEKAIGRTA
ARAEKGWLGRDVKLSSLPVNAGEKIDRPRGLLCLLQLLVQFLPLPAVRAT
FVRVFPVLRFYASHSETALRQAASVVLLRIAMAAGPSWDIGHVRNCDHYG
LSPATQNQEIQDESCEYESTRVVLWMLVCSWGKQAGICMKSPPTTTPRGE
IQANTPSGFEYGPVASKSGYVPGGDGLSSLDGGNFVSWEFHESVLMVYEG
VLKSLVKYAQSELFSDECDRSGGSDYSRDDFNGSPFTKVTADGTDTEETL
VNENPITSFLGWSTETIKATPSMRELIIYLHSQAEGALFQAEMLLQNRNK
RIGRKNKNIEVPEILPVSPAGALELWRAGTQLLPSLARAMMWWNPGALRR
ACERSAQVDAEWCRRGKVPYLQLRQRTRLRVASELIRAAVRYARHLAEAC
VDTTTEVERLNVTDGLDHIQSFRAIPSEITLTAVTTTRTEQDISGQTCVR
MSLPPETFRLLSWAVSAGETILTVL*
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mRNA from alignment at F-serratus_M_contig719:210136..213010+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18395.1 ID=mRNA_F-serratus_M_contig719.18395.1|Name=mRNA_F-serratus_M_contig719.18395.1|organism=Fucus serratus male|type=mRNA|length=2875bp|location=Sequence derived from alignment at F-serratus_M_contig719:210136..213010+ (Fucus serratus male)
TGTTTGATGAGTCTGAGGTTGGGGAAGAAGACTTTCTAGCCCCTGTAGAT
CAGGGAACAATCACAGAAGTGATACCGTCTGGTATTTCTGTCCCCAGTTC
TAAAGAGAAAAGGCAGGGGCAACAACGGTCGGCTGACTTGGCAGATGGTT
TTGAAGTGCTGGCCTTGGAGACAGGTGGTCGAGATACAGCGGCCTGGGAC
GGAAGAGAGAACGTAGCAGAAACTTCGAACGCCGTTGGCCACCCGTATAA
GGAGGGACGGTGCGGGCTCGAGACGATACGCCTTCACGCCCAGAAAGGCC
TTCGAGGAGCTCATGGCATGATCGAAACGTCTTCGTTGCCATCGCCACCG
TCGTCGTGCTCGCCTTCGAAATTGCCACCTCCTCCTCTTCATCTTCCCCC
GCGGCCGTTATGGACTACAGACTTACATCGGTCACCACTCAACGTGACTT
TTACGTGCCTAGCTCATTGCCAGGCGGTGGTCAGAGAGGCTGCGATTGAA
GTGATGTGCTCCTTGGCGCGTCTTCGGCCTCGTACGGCTTTTGCTTTGTA
CGAAAAGGCAATCGACGGCCTCGAAAGATGGAAAGTGTGCAATGAAAAAG
CAATTGGTAGAACGGCCGCCAGAGCAGAAAAAGGATGGCTGGGGCGCGAT
GTTAAGCTGAGCAGTCTGCCAGTTAATGCTGGGGAAAAGATTGACCGACC
AAGAGGCCTCTTATGTCTACTTCAGCTGCTGGTGCAATTTCTTCCTCTCC
CGGCAGTTAGAGCAACCTTTGTACGGGTGTTCCCGGTGCTAAGGTGATAT
AAAATACGTTCTCTGAGTAATTGCAAGGAAATGCCTTTTGTGTGCCCTCT
CGATTGAACGGTAGCCATCTTCGCTTGGAGTCGACATTTCGAAGGGTAAT
TGTTTGATCACCGAACGACTCGCACGAACAATTTCTCGAACTATTGGTGC
GAGGGGTGAGTGCGCACATCTGCGCATTCGGATTATCTCTTCATGCTTCC
GTCCTAAATCGAGGGCCTTGGACCGAAGTCAACGTTTTTCGAGGGGTTCA
ACGATTGGGGAGGGCGGAGATACGACGATTTCGTCCCCGGGGAGGTCACC
AAAATAGCCCGCTCTGGGGATGAAACTACATGATCACCGACATATTCGGC
AAGCTTGCCCTGAATTTATCGCATTTAACCAGGGGGTTGGTCAAATATGT
CCCCGGTAGGGGCTATTTTCGTCCCGTTCCTTCCCAAAACGGGGACAAAA
ATGTTACATCCCCTGCCCCCCCCAATCGTTGAACTGGTCTTTCAACATCG
ATCAGTTCGCCAATTTAATGCCTCCTCTGCAGGTTCTACGCCAGTCACTC
TGAGACAGCACTCCGGCAAGCCGCCAGCGTAGTGCTGCTTCGAATCGCCA
TGGCGGCGGGCCCATCTTGGGATATCGGGCACGTACGCAATTGCGATCAC
TACGGATTGTCACCTGCGACACAGAACCAAGAAATACAAGATGAAAGCTG
TGAGTACGAATCCACTAGAGTTGTCCTGTGGATGCTTGTGTGCAGCTGGG
GAAAACAAGCAGGAATATGCATGAAATCACCTCCTACGACAACACCCCGA
GGCGAAATACAAGCAAACACGCCGAGTGGTTTTGAATACGGCCCCGTCGC
ATCGAAAAGCGGGTATGTACCAGGTGGCGATGGATTAAGCAGCTTGGATG
GTGGAAACTTCGTATCGTGGGAGTTTCACGAAAGTGTCCTTATGGTGTAT
GAAGGGGTTCTGAAGAGCCTAGTAAAGTACGCCCAATCTGAACTATTTTC
TGACGAATGTGATCGTAGCGGTGGCAGCGACTATAGTCGTGACGACTTCA
ACGGTTCACCGTTCACCAAAGTGACGGCCGATGGCACAGACACAGAGGAG
ACTCTTGTCAACGAAAACCCCATCACCTCGTTTCTTGGGTGGTCAACAGA
GACTATTAAAGCGACACCATCAATGAGAGAGCTCATTATATATCTGCACA
GTCAAGCAGAGGGCGCTTTATTTCAAGCCGAGATGCTGCTACAAAACCGA
AACAAAAGAATTGGCCGTAAAAACAAGAATATTGAGGTGCCTGAGATTTT
GCCAGTATCGCCGGCTGGTGCGCTCGAGCTTTGGCGCGCGGGAACGCAGC
TTCTGCCTTCGTTAGCACGGGCCATGATGTGGTGGAACCCTGGGGCTCTA
CGACGGTGGGTACTCGAAAATCAAGACGTCTCTGAAAAAGGCAATGGTTT
TTGGCGTGAACTGATAGTAGAGTGAACAGGTCAGGTTCATGTCATAGTAG
GTAAAGTAGCCAAGCAACAGTTCCAAGAGATGATAGTATGGTCAGCCGGT
GAGAATAAGGGGGCGAGGAGATAATGACGACGTTTTGAGATACACGTTAC
GCGACTCAATCCTTTTCACCCCGTGGCATTGCCCTGCTTTTCAGGGCCTG
CGAACGGTCCGCTCAAGTCGACGCTGAGTGGTGTCGGCGAGGAAAGGTGC
CGTACTTGCAGCTACGACAAAGAACACGTCTGCGCGTGGCAAGCGAGCTC
ATCAGAGCGGCCGTGAGATACGCTCGGCACCTCGCGGAAGCATGTGTCGA
TACGACCACAGAGGTGGAAAGACTTAATGTCACGGACGGACTCGACCACA
TCCAGAGTTTCAGAGCCATTCCATCTGAAATCACGTTGACTGCGGTAACT
ACAACCAGAACAGAGCAAGATATTTCCGGGTCGGGGTTCACACGAGCTGC
CCACGATACGCAGTCAAACTTGTGTGCGAATGAGTCTTCCACCGGAAACC
TTTCGATTGTTGTCATGGGCCGTGAGCGCTGGGGAAACAATTTTGACGGT
ATTATAGATAGCTCAGGGAGTGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig719:210136..213010+

>mRNA_F-serratus_M_contig719.18395.1 ID=mRNA_F-serratus_M_contig719.18395.1|Name=mRNA_F-serratus_M_contig719.18395.1|organism=Fucus serratus male|type=CDS|length=3456bp|location=Sequence derived from alignment at F-serratus_M_contig719:210136..213010+ (Fucus serratus male)
ATGATCGAAACGTCTTCGTTGCCATCGCCACCGTCGTCGTGCTCGCCTTC
GAAATTGCCACCTCCTCCTCTTCATCTTCCCCCGCGGCCGTTATGGACTA
CAGACTTACATCGGTCACCACTCAACGTGACTTTTACGTGCCTAGCTCAT
TGCCAGGCGGTGGTCAGAGAGGCTGCGATTGAAGTGATGTGCTCCTTGGC
GCGTCTTCGGCCTCGTACGGCTTTTGCTTTGTACGAAAAGGCAATCGACG
GCCTCGAAAGATGGAAAGTGTGCAATGAAAAAGCAATTGGTAGAACGGCC
GCCAGAGCAGAAAAAGGATGGCTGGGGCGCGATGTTAAGCTGAGCAGTCT
GCCAGTTAATGCTGGGGAAAAGATTGACCGACCAAGAGGCCTCTTATGTC
TACTTCAGCTGCTGGTGCAATTTCTTCCTCTCCCGGCAGTTAGAGCAACC
TTTGTACGGGTGTTCCCGGTGCTAAGATGATCGAAACGTCTTCGTTGCCA
TCGCCACCGTCGTCGTGCTCGCCTTCGAAATTGCCACCTCCTCCTCTTCA
TCTTCCCCCGCGGCCGTTATGGACTACAGACTTACATCGGTCACCACTCA
ACGTGACTTTTACGTGCCTAGCTCATTGCCAGGCGGTGGTCAGAGAGGCT
GCGATTGAAGTGATGTGCTCCTTGGCGCGTCTTCGGCCTCGTACGGCTTT
TGCTTTGTACGAAAAGGCAATCGACGGCCTCGAAAGATGGAAAGTGTGCA
ATGAAAAAGCAATTGGTAGAACGGCCGCCAGAGCAGAAAAAGGATGGCTG
GGGCGCGATGTTAAGCTGAGCAGTCTGCCAGTTAATGCTGGGGAAAAGAT
TGACCGACCAAGAGGCCTCTTATGTCTACTTCAGCTGCTGGTGCAATTTC
TTCCTCTCCCGGCAGTTAGAGCAACCTTTGTACGGGTGTTCCCGGTGCTA
AGGTTCTACGCCAGTCACTCTGAGACAGCACTCCGGCAAGCCGCCAGCGT
AGTGCTGCTTCGAATCGCCATGGCGGCGGGCCCATCTTGGGATATCGGGC
ACGTACGCAATTGCGATCACTACGGATTGTCACCTGCGACACAGAACCAA
GAAATACAAGATGAAAGCTGTGAGTACGAATCCACTAGAGTTGTCCTGTG
GATGCTTGTGTGCAGCTGGGGAAAACAAGCAGGAATATGCATGAAATCAC
CTCCTACGACAACACCCCGAGGCGAAATACAAGCAAACACGCCGAGTGGT
TTTGAATACGGCCCCGTCGCATCGAAAAGCGGGTATGTACCAGGTGGCGA
TGGATTAAGCAGCTTGGATGGTGGAAACTTCGTATCGTGGGAGTTTCACG
AAAGTGTCCTTATGGTGTATGAAGGGGTTCTGAAGAGCCTAGTAAAGTAC
GCCCAATCTGAACTATTTTCTGACGAATGTGATCGTAGCGGTGGCAGCGA
CTATAGTCGTGACGACTTCAACGGTTCACCGTTCACCAAAGTGACGGCCG
ATGGCACAGACACAGAGGAGACTCTTGTCAACGAAAACCCCATCACCTCG
TTTCTTGGGTGGTCAACAGAGACTATTAAAGCGACACCATCAATGAGAGA
GCTCATTATATATCTGCACAGTCAAGCAGAGGGCGCTTTATTTCAAGCCG
AGATGCTGCTACAAAACCGAAACAAAAGAATTGGCCGTAAAAACAAGAAT
ATTGAGGTGCCTGAGATTTTGCCAGTATCGCCGGCTGGTGCGCTCGAGCT
TTGGCGCGCGGGAACGCAGCTTCTGCCTTCGTTAGCACGGGCCATGATGT
GGTGGAACCCTGGGGCTCTACGACGGTTCTACGCCAGTCACTCTGAGACA
GCACTCCGGCAAGCCGCCAGCGTAGTGCTGCTTCGAATCGCCATGGCGGC
GGGCCCATCTTGGGATATCGGGCACGTACGCAATTGCGATCACTACGGAT
TGTCACCTGCGACACAGAACCAAGAAATACAAGATGAAAGCTGTGAGTAC
GAATCCACTAGAGTTGTCCTGTGGATGCTTGTGTGCAGCTGGGGAAAACA
AGCAGGAATATGCATGAAATCACCTCCTACGACAACACCCCGAGGCGAAA
TACAAGCAAACACGCCGAGTGGTTTTGAATACGGCCCCGTCGCATCGAAA
AGCGGGTATGTACCAGGTGGCGATGGATTAAGCAGCTTGGATGGTGGAAA
CTTCGTATCGTGGGAGTTTCACGAAAGTGTCCTTATGGTGTATGAAGGGG
TTCTGAAGAGCCTAGTAAAGTACGCCCAATCTGAACTATTTTCTGACGAA
TGTGATCGTAGCGGTGGCAGCGACTATAGTCGTGACGACTTCAACGGTTC
ACCGTTCACCAAAGTGACGGCCGATGGCACAGACACAGAGGAGACTCTTG
TCAACGAAAACCCCATCACCTCGTTTCTTGGGTGGTCAACAGAGACTATT
AAAGCGACACCATCAATGAGAGAGCTCATTATATATCTGCACAGTCAAGC
AGAGGGCGCTTTATTTCAAGCCGAGATGCTGCTACAAAACCGAAACAAAA
GAATTGGCCGTAAAAACAAGAATATTGAGGTGCCTGAGATTTTGCCAGTA
TCGCCGGCTGGTGCGCTCGAGCTTTGGCGCGCGGGAACGCAGCTTCTGCC
TTCGTTAGCACGGGCCATGATGTGGTGGAACCCTGGGGCTCTACGACGGG
CCTGCGAACGGTCCGCTCAAGTCGACGCTGAGTGGTGTCGGCGAGGAAAG
GTGCCGTACTTGCAGCTACGACAAAGAACACGTCTGCGCGTGGCAAGCGA
GCTCATCAGAGCGGCCGTGAGATACGCTCGGCACCTCGCGGAAGCATGTG
TCGATACGACCACAGAGGTGGAAAGACTTAATGTCACGGACGGACTCGAC
CACATCCAGAGTTTCAGAGCCATTCCATCTGAAATCACGTTGACTGCGGT
AACTACAACCAGAACAGAGCAAGATATTTCCGGGGCCTGCGAACGGTCCG
CTCAAGTCGACGCTGAGTGGTGTCGGCGAGGAAAGGTGCCGTACTTGCAG
CTACGACAAAGAACACGTCTGCGCGTGGCAAGCGAGCTCATCAGAGCGGC
CGTGAGATACGCTCGGCACCTCGCGGAAGCATGTGTCGATACGACCACAG
AGGTGGAAAGACTTAATGTCACGGACGGACTCGACCACATCCAGAGTTTC
AGAGCCATTCCATCTGAAATCACGTTGACTGCGGTAACTACAACCAGAAC
AGAGCAAGATATTTCCGGTCAAACTTGTGTGCGAATGAGTCTTCCACCGG
AAACCTTTCGATTGTTGTCATGGGCCGTGAGCGCTGGGGAAACAATTTTG
ACGGTATTATAGTCAAACTTGTGTGCGAATGAGTCTTCCACCGGAAACCT
TTCGATTGTTGTCATGGGCCGTGAGCGCTGGGGAAACAATTTTGACGGTA
TTATAG
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