mRNA_F-serratus_M_contig719.18387.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18387.1
Unique NamemRNA_F-serratus_M_contig719.18387.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig719.18387.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 2.930e-58
Identity = 159/275 (57.82%), Postives = 189/275 (68.73%), Query Frame = 1 
Query:  130 PVKFLGCSFEENYAHEDGGAIYSNSGYDIIRDSNFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSMSDVTFRGNTYFCETGEFSSNTTAD------SNSCKFLEVCSRCTVECDSELEAGAIVEDPDTIPTCEKAPDGATTSNRGETVETLEILPGYYRSSATSLDIRECFHAEACVGGHEVGKYCTAGYVGPYCAVCHPRYAPGYHHTCKSCIGGSKRGAVAGITIGLCIAFVVLGVVVANLVSVVTPSPAAVQGGSG 936
            PVKFL C FE N A EDGGA+YS + +D+IR S F    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          N ++CE GEF + T  D      ++ C+F  VCSRC  ECDSELE+ A + D +T+PTCE+AP+G+ T+ RG T+ TLEILPG+YRSS TS DIRECFH +AC GG  VG YC  GY+GPYCAVC   Y+PGY  TCKSC+G SK+ A+        +A   +  +V+ LVSVV   P   QG  G
Sbjct:  425 PVKFLDCLFESNDALEDGGALYSVASFDMIRGSKFFQNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDNDFYCEEGEFGTETLIDKDLFGGADQCRFGRVCSRCASECDSELESAAELVDAETLPTCEEAPEGSRTTRRGATLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGPYCAVCSAGYSPGYSRTCKSCMGDSKKSALVFAAAIGALALAAVVALVSRLVSVVEVGPPQQQGSKG 699
[Close]
BLAST of mRNA_F-serratus_M_contig719.18387.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 3.970e-58
Identity = 161/267 (60.30%), Postives = 191/267 (71.54%), Query Frame = 1 
Query:  133 VKFLGCSFEENYAHEDGGAIYSNSGYDIIRDSNFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSMSDVTFRGNTYFCETGEFSSNTTAD------SNSCKFLEVCSRCTVECDSELEAGAIVEDPDTIPTCEKAPDGATTSNRGETVETLEILPGYYRSSATSLDIRECFHAEACVGGHEVGKYCTAGYVGPYCAVCHPRYAPGYHHTCKSCIGGSKRGA-VAGITIGLCIAFVVLGVVVANLVSVVTPSP 912
            VKFL C FE N A EDGGA+YS + +D+IR SNF+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          N ++CE GEF + T  D      ++ C+F  VCSRC  EC SELE  A + D DT+PTCE AP+G+ T+ RG T+ TLE+LPG+YRSS TS DIRECFH +AC GG  +G YC+ GY+GPYCAVC   Y+PGY  TCKSC+G SK+ A V    IGL +A   + V+V+ LVSVV   P
Sbjct:  402 VKFLDCLFESNGASEDGGALYSVASFDVIRGSNFSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDFYCEEGEFGTETLIDKDLFGGADQCRFRRVCSRCASECGSELERTAELVDADTLPTCETAPEGSRTTRRGATLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGPYCAVCAAGYSPGYSRTCKSCMGNSKKSALVFAAAIGL-LALAAVMVLVSRLVSVVEVGP 667
[Close]
BLAST of mRNA_F-serratus_M_contig719.18387.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 1.550e-56
Identity = 159/270 (58.89%), Postives = 190/270 (70.37%), Query Frame = 1 
Query:  121 TVSPVKFLGCSFEENYAHEDGGAIYSNSGYDIIRDSNFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSMSDVTFRGNTYFCETGEFSSNTTADSNS-CKFLEVCSRCTVECDSELEAGAIVEDPDTIPTCEKAPDGATTSNRGETVETLEILPGYYRSSATSLDIRECFHAEACVGGHEVGKYCTAGYVGPYCAVCHPRYAPGYHHTCKSCIGGSKRGA-----VAGITIGLCIAFVVLGVVVANLVSVVTPSP 912
            T +P KFL C FEEN+A EDGGAIYS +G+D+++DS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           +++CE G FS+    +    C+F  VCSRC  EC SELE    V DPD +P CE  P+GA T++RG T+ TLEILPGYYRSSATS DIRECF+ +AC GG  VG+YC AGY GPYCAVC   ++PGY H+CKSC+G S+R A       G+ + L + F+      A LVSVV  +P
Sbjct:  433 TAAPTKFLSCVFEENHASEDGGAIYSVAGFDMVKDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFYCEEGTFSTEVEIEGEDVCRFGLVCSRCASECASELEDEVTVADPDLLPACEAVPEGAQTTSRGGTLATLEILPGYYRSSATSTDIRECFYEDACEGGKVVGEYCAAGYTGPYCAVCTAGFSPGYFHSCKSCMGDSRRRAFYVVSAVGVLVLLAVVFMA-----AKLVSVVETTP 697
[Close]
BLAST of mRNA_F-serratus_M_contig719.18387.1 vs. uniprot
Match: A0A6H5L874_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L874_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.280e-54
Identity = 157/265 (59.25%), Postives = 186/265 (70.19%), Query Frame = 1 
Query:  130 PVKFLGCSFEENYAHEDGGAIYSNSGYDIIRDSNFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSMSDVTFRGNTYFCETGEFSSNTTADSNS-CKFLEVCSRCTVECDSELEAGAIVEDPDTIPTCEKAPDGATTSNRGETVETLEILPGYYRSSATSLDIRECFHAEACVGGHEVGKYCTAGYVGPYCAVCHPRYAPGYHHTCKSCIGGSKRGAVAGI-TIGLCIAFVVLGVV--VANLVSVVTPSP 912
            P KFLGC F EN+A EDGGAIYS +G+D++++S F  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           +++CE G FS+    +    C+F  VCSRC  EC SEL+    V DPD +P CE  P+GA T+ RG T+ TLEILPGYYRS ATS DIRECF  +AC GG  VG+YC  GY GPYCAVC   ++ GY H+CKSC+G S+R A   + T+G   A V+L VV   A LVSVV  +P
Sbjct:  294 PTKFLGCVFGENHASEDGGAIYSVAGFDMVKESTFFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFYCEEGTFSTEVEIEGEEVCRFGRVCSRCASECGSELQDEVTVADPDLLPACEAVPEGAQTTTRGGTLATLEILPGYYRSLATSTDIRECFFEDACEGGQVVGEYCATGYSGPYCAVCTAGFSRGYFHSCKSCMGDSRRRAFYVVSTVG---ALVLLAVVFLAAKLVSVVEMTP 555
[Close]
BLAST of mRNA_F-serratus_M_contig719.18387.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 2.620e-32
Identity = 92/275 (33.45%), Postives = 130/275 (47.27%), Query Frame = 1 
Query:   91 DSSTSGSIASTVSPVKFLGCSFEENYAHEDGGAIYSNSGYDIIRDSNFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSMSDVTFRGNTYFCETG----EFSSNTTADSNSCKFLEVCSRCTVECDSELEAGAIVEDPDTIPTCEKAPDGATTS-NRGETVETLEILPGYYRSSATSLDIRECFHAEACVGGHEVGKYCTAGYVGPYCAVCHPRYAPGYHHTCKSCIGGSKRGAVAGITIGLCIAFVVLGVVVANLVSVV 900
            D   SGS+ +T+       C F+ N A  DGGA+YS +GYD I+D  F                                             +++D TF  NTY+C +G    E+       S +C+F  VCS C   C+    +  +V D   +P CE A  G  TS + G T+  L +L GYYR+SA S ++ +C+  EAC+GG +V +YC  GY G YCAVC   YA GY  +C  C G + R A+        +A V + +V+A+LV VV
Sbjct:  444 DDPGSGSVNATM-------CVFQGNSA-VDGGAMYSAAGYDGIKDCRFEDNLAVGSGGAYLHSGVLVELDRSTFVGNRARDAGLAVQSLGIAGNITDTTFESNTYYCSSGQYGYEYEIGEDEVSGTCRFGVVCSSCAASCEDNPGSVVVVNDAH-VPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRGAYCAVCDEGYASGYQFSCSICDGENLRSAIGTSVALFFVALVGIALVIADLVRVV 709
[Close]
BLAST of mRNA_F-serratus_M_contig719.18387.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.360e-26
Identity = 62/149 (41.61%), Postives = 87/149 (58.39%), Query Frame = 1 
Query:  379 DVTFRGNTYFCETGEFSSNTTADSNSCKFLEVCSRCTVECDSELEAGAIVEDPDTIPTCEKAPDGATTSNRGETVETLEILPGYYRSSATSLDIRECFHAEACVGGHEVGKYCTAGYVGPYCAVCHPRYAPGYHHTCKSCIGGSKRGAV 825
            +VTF  NT  C  GE++ +  A+ +SC+F   C+RC+ +CD+ + +   + D  TIP C +  +G   S+ G TV TL++  GYYR+SA S  + EC+   AC GG +   YC  GY GPYC+VC   YAPG  + C  C G S   AV
Sbjct:  268 NVTFASNTLNCPLGEYAYDKEAEDDSCRFELACARCSADCDA-IPSSVTMADS-TIPVCLELMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTGACAGGTDPENYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAV 414
[Close]
BLAST of mRNA_F-serratus_M_contig719.18387.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.710e-25
Identity = 68/174 (39.08%), Postives = 94/174 (54.02%), Query Frame = 1 
Query:  379 DVTFRGNTYFCETGEFSSNTTADSNSCKFLEVCSRCTVECDSELEAGAIVEDPDTIPTCEKAPDGATTSNRGETVETLEILPGYYRSSATSLDIRECFHAEACVGGHEVGKYCTAGYVGPYCAVCHPRYAPGYHHTCKSCIGGSKRGAVAGITIGLCIAFVVLGVVVANLVSVV 900
            +V F  NT  C  GE + +  A+ +SC+F   C+RC+ +CD+ + +   + D  TIP C ++ +G   S+ G TV TL++  GYYR+SA S  + EC+   AC GG +   YC  GY GPYC+VC   YAPG  + C  C G S   AV               VV A+LV VV
Sbjct:  509 NVAFASNTLNCPPGENAYDKEAEDDSCRFELACARCSADCDA-IPSSVTMADS-TIPVCVESMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTSACAGGTDPKNYCADGYEGPYCSVCADGYAPGTAYQCHECSGTSMGSAVGVAXXXXXXXXXXXAVVAADLVRVV 680
[Close]
BLAST of mRNA_F-serratus_M_contig719.18387.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.800e-15
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 1 
Query:  565 PDGATTSNRGETVETLEILPGYYRSSATSLDIRECFHAEACVGGHEVGK-------YCTAGYVGPYCAVCHPRYAPGYHHTCKSCIGGSKRGAVAGITIGLCIAFVVLGVVV 879
            P+G +  + G  +ETL +  GY+RS+ TS +IRECF+ +AC+G  EV +       YC  GY+GPYCAVC   Y  G  HTC SC G    G V  + + L    +V+GVV+
Sbjct:  445 PEGLSCDSEGTLLETLPLAEGYWRSTETSTNIRECFNDDACIGS-EVSQRISSPNDYCDTGYMGPYCAVCMDGYTTGVSHTCHSCDGSYWAGMV--VVMALTGVVLVVGVVI 553
[Close]
BLAST of mRNA_F-serratus_M_contig719.18387.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 5.340e-15
Identity = 54/167 (32.34%), Postives = 83/167 (49.70%), Query Frame = 1 
Query:  397 NTYFCETGEFSSNTTADSNSCKFLEVCSRCTVECDSELEAGAIVEDPDTIPTCEKAPDGATTSNRGETVETLEILPGYYRSSATSLDIRECFHAEACVGGHEVGK-YCTAGYVGPYCAVCHPRYAPGYHHTCKSCIGGSKRGAVAGITIGLCIAFVVLGVVVANLVS 894
            N   C  G + ++T  +  + +F  VC  C    DS   AG  +      P C    + ++    G T+ETL I  GY+R++  S  I  C++A+AC GG    + +C +GY+GPYCAVC PR++    H C  C G  ++G +A   I    A + +  V   L+S
Sbjct:  479 NDLTCAVGSYRNDTEEEGATARFGTVCFDCPPWDDS---AGNDITRGTVTPECAAPLEHSSADAVGATLETLSIDKGYWRATNESDRILACYNADACSGGQTGSESFCASGYMGPYCAVCEPRHSSSLAHNCTRCSGSRRQGLLAATVIAAIAAVLAIAAVSRYLLS 642
[Close]
BLAST of mRNA_F-serratus_M_contig719.18387.1 vs. uniprot
Match: A0A7S2QVJ1_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVJ1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 9.760e-12
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 1 
Query:  553 CEKAPDGATTSNRGETVETLEILPGYYRSSATSLDIRECFHAEACVGGHEVGKYCTAGYVGPYCAVCHPRYAPGYHHTCKSCIGGSK 813
            C +  +G     +G T+ETL +LPGY+R S TS D+REC  AEAC+GG+   + C  G+ GPYC  C   Y       CK C G +K
Sbjct:  185 CVEIVEGVRNDIQGLTLETLALLPGYWRVSNTSDDVRECLVAEACLGGNST-EICREGHNGPYCNTCIENYNENPFGLCKECTGSTK 270
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FTT9_ECTSI2.930e-5857.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE3.970e-5860.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI1.550e-5658.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L874_9PHAE1.280e-5459.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI3_9PHAE2.620e-3233.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWD7_ECTSI3.360e-2641.61Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JSF5_9PHAE1.710e-2539.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRF7_ECTSI1.800e-1542.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX12_9PHAE5.340e-1532.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2QVJ1_9STRA9.760e-1243.68Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:80543..85459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue1.5e-53
Seed eggNOG ortholog2880.D7FTT9
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1035
Cds size1035
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932197.7013319-CDS-F-serratus_M_contig719:80542..806071622932197.7013319-CDS-F-serratus_M_contig719:80542..80607Fucus serratus maleCDSF-serratus_M_contig719 80543..80607 +
1690964194.3716638-CDS-F-serratus_M_contig719:80542..806071690964194.3716638-CDS-F-serratus_M_contig719:80542..80607Fucus serratus maleCDSF-serratus_M_contig719 80543..80607 +
1622932197.7167568-CDS-F-serratus_M_contig719:82102..822301622932197.7167568-CDS-F-serratus_M_contig719:82102..82230Fucus serratus maleCDSF-serratus_M_contig719 82103..82230 +
1690964194.38537-CDS-F-serratus_M_contig719:82102..822301690964194.38537-CDS-F-serratus_M_contig719:82102..82230Fucus serratus maleCDSF-serratus_M_contig719 82103..82230 +
1622932197.7315757-CDS-F-serratus_M_contig719:82685..827421622932197.7315757-CDS-F-serratus_M_contig719:82685..82742Fucus serratus maleCDSF-serratus_M_contig719 82686..82742 +
1690964194.396752-CDS-F-serratus_M_contig719:82685..827421690964194.396752-CDS-F-serratus_M_contig719:82685..82742Fucus serratus maleCDSF-serratus_M_contig719 82686..82742 +
1622932197.7449403-CDS-F-serratus_M_contig719:83134..833281622932197.7449403-CDS-F-serratus_M_contig719:83134..83328Fucus serratus maleCDSF-serratus_M_contig719 83135..83328 +
1690964194.4084163-CDS-F-serratus_M_contig719:83134..833281690964194.4084163-CDS-F-serratus_M_contig719:83134..83328Fucus serratus maleCDSF-serratus_M_contig719 83135..83328 +
1622932197.7612917-CDS-F-serratus_M_contig719:83878..840261622932197.7612917-CDS-F-serratus_M_contig719:83878..84026Fucus serratus maleCDSF-serratus_M_contig719 83879..84026 +
1690964194.4209306-CDS-F-serratus_M_contig719:83878..840261690964194.4209306-CDS-F-serratus_M_contig719:83878..84026Fucus serratus maleCDSF-serratus_M_contig719 83879..84026 +
1622932197.7788775-CDS-F-serratus_M_contig719:84678..848251622932197.7788775-CDS-F-serratus_M_contig719:84678..84825Fucus serratus maleCDSF-serratus_M_contig719 84679..84825 +
1690964194.4300296-CDS-F-serratus_M_contig719:84678..848251690964194.4300296-CDS-F-serratus_M_contig719:84678..84825Fucus serratus maleCDSF-serratus_M_contig719 84679..84825 +
1622932197.7999299-CDS-F-serratus_M_contig719:85163..854591622932197.7999299-CDS-F-serratus_M_contig719:85163..85459Fucus serratus maleCDSF-serratus_M_contig719 85164..85459 +
1690964194.4402897-CDS-F-serratus_M_contig719:85163..854591690964194.4402897-CDS-F-serratus_M_contig719:85163..85459Fucus serratus maleCDSF-serratus_M_contig719 85164..85459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18387.1prot_F-serratus_M_contig719.18387.1Fucus serratus malepolypeptideF-serratus_M_contig719 80543..85459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18387.1

>prot_F-serratus_M_contig719.18387.1 ID=prot_F-serratus_M_contig719.18387.1|Name=mRNA_F-serratus_M_contig719.18387.1|organism=Fucus serratus male|type=polypeptide|length=345bp
GQPLTSVTSSTTSDSSLLGSPSSSISSAIFDSSTSGSIASTVSPVKFLGC
SFEENYAHEDGGAIYSNSGYDIIRDSNFTRNSAESSGGACFHGGVLAEVS
NSVYELNRAGKEGLAILSLGLLDSMSDVTFRGNTYFCETGEFSSNTTADS
NSCKFLEVCSRCTVECDSELEAGAIVEDPDTIPTCEKAPDGATTSNRGET
VETLEILPGYYRSSATSLDIRECFHAEACVGGHEVGKYCTAGYVGPYCAV
CHPRYAPGYHHTCKSCIGGSKRGAVAGITIGLCIAFVVLGVVVANLVSVV
TPSPAAVQGGSGASPGHAGEANSAEGGASEKRDGPSGAVVSNRLK
back to top

mRNA from alignment at F-serratus_M_contig719:80543..85459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18387.1 ID=mRNA_F-serratus_M_contig719.18387.1|Name=mRNA_F-serratus_M_contig719.18387.1|organism=Fucus serratus male|type=mRNA|length=4917bp|location=Sequence derived from alignment at F-serratus_M_contig719:80543..85459+ (Fucus serratus male)
GGTCAGCCCTTGACGTCAGTGACAAGCAGCACTACCAGCGATTCTTCATT
ACTTGGTTCTCCAAGGCAAGCTTTCGTGACCAATGAAGGGATAGGGTTGG
GGGTAGCGATTCTGGTTGTATATGCTGTTGGCGGTTTCGATACTGCTCGA
TAGTCAGTCAAACTTTAAGCTGCATTTGATACGCACGTAAGGACGAAGCG
CAACCCTCCTCTGTGCCTGCTGCAGGTAAAAGTTGTATGTTCCCTTGTAT
GTATGTTTGTATGTATGTGTGTATTATGTATGGTCATTACATATAGCAAA
GGTAAGGATCAACCGGGTAAGGTTGTCAATCCTGCTCGGGGTCAGCTGAA
CAAGGAAACATATTTTTACCTGTCCCCGCTCGCGCCTAAGAGTTCATGTA
TGGTCATAGTCCTCACACATACAGCAAGAGTAAGGATCAACCGGGTAAGG
TTGCCAATCCTGCTCGTGGTCAGTTAAACAGGAATAACAAATGTTTTCCT
GTCCCCTTCCGCGCCTGAGAATTTGGTATCGCGAGACGGTTTCAGCAGTC
CCGTCCCACGTCAGCCTGCTCATCTCCGTACTCAGGCTAAATCTGGTGCT
TACTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATTTACTGACTT
TAAACCGCCATACGCCATCGGGCCAGTCCCGAGTTTATCGGGCAACGTAA
TTGCGTACCGATGACGTACACTACCGAGAGTCCGCCGGCACAGGCCCCGT
GCATCTCAACTTAGTTCGAAATGGGTGCTGCCTTGGTAGGTCACCATGAA
CCAGTTAATATACGCCTCTATTTCACACACCCACTATTGGTATGAAGTGG
GCATGTTGAAAGTACCGGTGTGGGCTGTCGAAACCGATTGTGTCATACAC
TTTATAAAAGTGCAAACGCCTCACTGATCGCCCATGGGAAAGGCCAACAC
AAACAGCATAGCATGAATAGCATCACGGGGCCGGATGGCGCCTTTATGTG
TCGATATAACAACTCACACTTGACACACATCCATACAACTTGAATCGGAA
TTAAAGGCGCTGGTTGAGAAGTCTAGGTTGTTTTCCTATTTCAAAGCTCA
CTGTTGCGGTCGAGGGAGGTCTCGCCGCGTTTTCCACTCCGGGGATGACC
TCCTCACTGCCCTCGATACCGCCTCCTCAACAGCGATTAACACTGCTAAG
ACGTGCCCCCCCCCCCCCTCTCCCCTACCATTCATCTTCCTAACTCTGGT
CCCAAGAGTTTGGTTTTCGTAGGGCTCCTGGAGTGCTCCACTCTTCGGAT
GTTCTTTGCTCGCACTTGCAAGCAAGGATTTCTTCTTGCCAGAGAACGTA
TCCCCGCCGCGAGGCTTGAACCACCGGCGATGGAACAATCTACATACATG
TTTTAACTACTATACCACTAGTCCACAGTCAGCGCTCAGTGTCCGACTTG
TCCATGCCCGTGGTGGAAAGTTGGCCTTATAGCAGCATGCAGAGCTAACC
TGCGCCCCGTTTTCGTGGCCGCTGTGACGATTTGGCTTCTTGTTTCTACC
ATTTCCCCAGCTCGTCCATTTCGTCGGCCATTTTCGACTCATCAACCTCG
GGCTCGATTGCTTCTACTGTGAGCCCAGTGAAGTTTCTTGGCTGTAGCTT
TGAGGAGAATTACGCCCACGAGGATGGAGGGGCCATATGTGAGTAACCTA
GGCGCTTTGTTGGGGGTGGTCGAGGCATTTGATACGTATGTACCGCATGC
ATTACTGTACTTGTGACTAAAACGATACAAGCCATACTGTCTTCCATCAG
ACAACGTGTCCTTTGTAAAGGCCTGTTGTCACGCTTTGAGCTTGAGTATA
CTCGTATGATGGGTTCCTGCGACTCCTCCGCTTGAGTAGCACGCCCAAAT
ACTCCGTCCTCTAATAGAGCGAGGAACTTAGAGTTCTCCTGGGATATAAT
ATCCTGCAAGTCTTATGCCTTCTTTCCAAAGCCCACCAGGAAAACGTGTG
CCTAGGTGTTTCCCCACCAGGAACGCGTTTGTCTGTGGTCTTCCTTTCCT
CACGCGGGGGTTCTTTTCTTACAATTTGTTTGTGTTCGCGTTTGTGCTGC
GCATGCATATAACTGTAACTTGAACGGCCCCTACGCTTCACAGACAGCAA
CTCGGGCTACGACATCATCCGAGACTCGAACTTCACCAGAAACAGCGCGG
GTAAAGAAAAATAGAGCCTTTGAAAAGTGCGAGTTATTCTGCAATGTGCG
ATGTTACCTTAGATGCCCCTTCAGAGCCCGTACCTTTCACTCTTTGCGTA
TCTTGTGTGAAAGTTTGACCGCGTCTTTCTTCTACGGCATTTCGACAAGG
AAACGACGTGTCTCCATAGCGTGTGGGGAAGCAAGCATTTACGAGCTTTT
CTCCGTACTGCTACGTGTGCCCCCCCCCCCCCTCCCCCGCCTTCCTTAAC
ATATCGTTTCTTGTTGCCAACAGCCTTTTGCCTCTCTCTCTCAAACGAAT
CGGGTGTCTTAGGGCCCTTGTTATTTTCAATCTTTTACGGCCTTTCCTGG
ACTTGCCGAACCCCCTTCCTTTTACGTTCAAACAAACGGCAGAATCATCA
GGAGGAGCCTGTTTCCACGGCGGGGTGTTGGCTGAGGTGTCCAACTCGGT
GTACGAGCTCAACCGCGCCGGTAAAGAAGGTCTCGCGATCCTGAGCCTGG
GTCTGCTGGACTCTATGAGCGACGTCACCTTCCGCGGCAACACCTACTTT
TGCGAGACCGGGGAGTTCAGCTCCAACACGACGGCGGTGCGCTCTGACGG
ATGTTTTTTGACGTAGCCCACCAGGTGGTGGTGATGAAAGCAGAGGCACG
TGTAGGTTTAGGGGGGGGGGAGAGGGATCATTTTTGCTTGCTTGTGGACG
AAGGTCTGGGTCTCTACGTTTCTGTTATGGTGGTTTTGCTTTTGTCCTAT
ATAATAGTTGAGGTTTAGAGGGGTTCAACGATTGGGGAGGGCGGGGATAC
GACGATTTCGTCACCGGGGAGGTCACCAAAATAGCCCGCTCCGGGGATGA
AACTACATGATCACCGACATATTCGGCAAGCTTGCCCTGAATTTATCGCA
TTTAACCAGGGGGTTGGTCAAATATGTTCCCGGTAGGGGCTATTTTCGTC
CCGTTCCTTCCCAAAACGGGGACAAAAATGTTATATCCCCTGCCCCCCCC
CAATCGTTGAACTGGTCTTTAGATAGAAAAGTCGACTCTATCGAGCGGGC
TTCCGCCACCAAACCTCTCACATTGCGTTTCCCAAGTCCAGAGTACGTAC
CGCCCATTGCTCCACTCGGTGATCACGCGGGGGCAGGATTCTAACTCATG
CAAATTCTTGGAGGTGTGCTCGAGATGCACGGTCGAGTGCGACAGCGAGC
TCGAAGCTGGCGCCATCGTTGAGGACCCGGATACGATCCCCACCTGCGAG
AAGGCTCCGGATGGCGCCACGACTTCGAATCGAGGTGAACCGCCAAGTGG
GAGAAAACATGCGTAACATACGTTCCCTGCCAGACACCTCCTTCACCCTC
ACCGCTTCTACACCGCTAAGTGCTTGTGCGAGGAAACCCCGTCAACGTCA
ACATCCTTTTCACTCGAATGAATTGCTGAAGTATAGTCGTTCTTGTTCAG
TAATGTTGCGAAGTGTTCTGTTTCAGAAAGAAAGCGACGCGAGCGTCCAG
CAAACATGACTTTACGTCTCGAATAAGTCCCCAGCAACGGCGAGTGATGG
CGGTAGGAGCTGAAGGAGTGGGACTGCCGTGTCCGTTTGTCCCGTATATT
TTGACCATCACGTTTTCGTCTAATATTTTAATTCTTGCTTACTCATTTTC
TACGGTGGTATGCCTATCTTACACCCTTGCCACGTCAGGTGTGCTTGTCC
ATATCTTTGTTGAAAAATAACGTTATTCTTTTTTTGCGCTATTTCTTGTT
AATCTTTCCCGTATATTTTTTGTTTCCTAAACTCTGTTTTTCTATTTTGG
TCGAGTTTGTGTACGCGTGCCGCTGAAGACGCGGTTTTTAGTGCTCTCGC
AAACGAGCGATCGGTCCAACGGTCGGAAACACGCTTCACTGTGATGGAAA
CCGTTGCTGTTTTGCAATTGTTTTATCTCCCCTCAGGTGAAACAGTGGAA
ACCCTGGAGATCCTGCCTGGTTACTACCGCTCTTCTGCAACAAGCCTCGA
CATCAGGGAGTGCTTCCACGCCGAAGCTTGCGTCGGCGGACACGAAGTAG
GAAAGTACTGCACTGCGGGTTACGTGGGACCATGTAAGACATTCGATGCG
CGGTGCGCAGACGGTGAACGCGTGGGGGGGCGGTTCTCAAAGGGTCTTTT
CTTCGTCGATCTCGATGCCGGGTACATGGGGAAGCAGCTTTCGTTCGCGT
GGTGGCAGCGTGGTTTGTCGACTTTACGCGTGAGCACTCATACCAAAACC
ACGCCCAACCAATAACCTCGCCGATCTATACAGGCTGAAAGTGATGAAGC
TTCTACGTTCCGTTGTTCCGCTTTTTGTCCTTCCCGCCTCTTCAAACCCT
TGCCTCTCGCAAAACTCGGAAACACGCCTGGCGTTGAATTACCCCACCTC
TCCACATTTCCGCTACCGAAGACTGCGCGGTGTGTCACCCCCGCTACGCC
CCGGGTTACCACCACACGTGCAAGTCGTGCATCGGCGGTAGCAAGCGGGG
CGCCGTGGCGGGGATAACGATAGGGTTGTGCATTGCCTTTGTGGTCTTGG
GCGTCGTAGTCGCTAACCTGGTGTCAGTGGTAACGCCGAGTCCAGCGGCG
GTCCAAGGTGGCTCCGGTGCTAGCCCCGGCCACGCCGGGGAAGCAAACAG
CGCCGAGGGGGGCGCCTCGGAAAAACGGGACGGGCCATCCGGGGCCGTGG
TCTCAAATCGTCTGAAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig719:80543..85459+

>mRNA_F-serratus_M_contig719.18387.1 ID=mRNA_F-serratus_M_contig719.18387.1|Name=mRNA_F-serratus_M_contig719.18387.1|organism=Fucus serratus male|type=CDS|length=2070bp|location=Sequence derived from alignment at F-serratus_M_contig719:80543..85459+ (Fucus serratus male)
GGTCAGCCCTTGACGTCAGTGACAAGCAGCACTACCAGCGATTCTTCATT
ACTTGGTTCTCCAAGGGTCAGCCCTTGACGTCAGTGACAAGCAGCACTAC
CAGCGATTCTTCATTACTTGGTTCTCCAAGCTCGTCCATTTCGTCGGCCA
TTTTCGACTCATCAACCTCGGGCTCGATTGCTTCTACTGTGAGCCCAGTG
AAGTTTCTTGGCTGTAGCTTTGAGGAGAATTACGCCCACGAGGATGGAGG
GGCCATATCTCGTCCATTTCGTCGGCCATTTTCGACTCATCAACCTCGGG
CTCGATTGCTTCTACTGTGAGCCCAGTGAAGTTTCTTGGCTGTAGCTTTG
AGGAGAATTACGCCCACGAGGATGGAGGGGCCATATACAGCAACTCGGGC
TACGACATCATCCGAGACTCGAACTTCACCAGAAACAGCGCGGACAGCAA
CTCGGGCTACGACATCATCCGAGACTCGAACTTCACCAGAAACAGCGCGG
AATCATCAGGAGGAGCCTGTTTCCACGGCGGGGTGTTGGCTGAGGTGTCC
AACTCGGTGTACGAGCTCAACCGCGCCGGTAAAGAAGGTCTCGCGATCCT
GAGCCTGGGTCTGCTGGACTCTATGAGCGACGTCACCTTCCGCGGCAACA
CCTACTTTTGCGAGACCGGGGAGTTCAGCTCCAACACGACGGCGAATCAT
CAGGAGGAGCCTGTTTCCACGGCGGGGTGTTGGCTGAGGTGTCCAACTCG
GTGTACGAGCTCAACCGCGCCGGTAAAGAAGGTCTCGCGATCCTGAGCCT
GGGTCTGCTGGACTCTATGAGCGACGTCACCTTCCGCGGCAACACCTACT
TTTGCGAGACCGGGGAGTTCAGCTCCAACACGACGGCGGATTCTAACTCA
TGCAAATTCTTGGAGGTGTGCTCGAGATGCACGGTCGAGTGCGACAGCGA
GCTCGAAGCTGGCGCCATCGTTGAGGACCCGGATACGATCCCCACCTGCG
AGAAGGCTCCGGATGGCGCCACGACTTCGAATCGAGGATTCTAACTCATG
CAAATTCTTGGAGGTGTGCTCGAGATGCACGGTCGAGTGCGACAGCGAGC
TCGAAGCTGGCGCCATCGTTGAGGACCCGGATACGATCCCCACCTGCGAG
AAGGCTCCGGATGGCGCCACGACTTCGAATCGAGGTGAAACAGTGGAAAC
CCTGGAGATCCTGCCTGGTTACTACCGCTCTTCTGCAACAAGCCTCGACA
TCAGGGAGTGCTTCCACGCCGAAGCTTGCGTCGGCGGACACGAAGTAGGA
AAGTACTGCACTGCGGGTTACGTGGGACCATGTGAAACAGTGGAAACCCT
GGAGATCCTGCCTGGTTACTACCGCTCTTCTGCAACAAGCCTCGACATCA
GGGAGTGCTTCCACGCCGAAGCTTGCGTCGGCGGACACGAAGTAGGAAAG
TACTGCACTGCGGGTTACGTGGGACCATACTGCGCGGTGTGTCACCCCCG
CTACGCCCCGGGTTACCACCACACGTGCAAGTCGTGCATCGGCGGTAGCA
AGCGGGGCGCCGTGGCGGGGATAACGATAGGGTTGTGCATTGCCTTTGTG
GTCTTGGGCGTCGTAGTCGCTAACCTGGTGTCAGTGGTAACGCCGAGTCC
AGCGGCGGTCCAAGGTGGCTCCGGTGCTAGCCCCGGCCACGCCGGGGAAG
CAAACAGCGCCGAGGGGGGCGCCTCGGAAAAACGGGACGGGCCATCCGGG
GCCGTGGTCTCAAATCGTCTGAAGACTGCGCGGTGTGTCACCCCCGCTAC
GCCCCGGGTTACCACCACACGTGCAAGTCGTGCATCGGCGGTAGCAAGCG
GGGCGCCGTGGCGGGGATAACGATAGGGTTGTGCATTGCCTTTGTGGTCT
TGGGCGTCGTAGTCGCTAACCTGGTGTCAGTGGTAACGCCGAGTCCAGCG
GCGGTCCAAGGTGGCTCCGGTGCTAGCCCCGGCCACGCCGGGGAAGCAAA
CAGCGCCGAGGGGGGCGCCTCGGAAAAACGGGACGGGCCATCCGGGGCCG
TGGTCTCAAATCGTCTGAAG
back to top