mRNA_F-serratus_M_contig719.18393.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18393.1
Unique NamemRNA_F-serratus_M_contig719.18393.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:199661..200140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size481
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932197.1426024-CDS-F-serratus_M_contig719:199660..2000051622932197.1426024-CDS-F-serratus_M_contig719:199660..200005Fucus serratus maleCDSF-serratus_M_contig719 199661..200005 +
1690964194.1839929-CDS-F-serratus_M_contig719:199660..2000051690964194.1839929-CDS-F-serratus_M_contig719:199660..200005Fucus serratus maleCDSF-serratus_M_contig719 199661..200005 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932197.164946-UTR-F-serratus_M_contig719:200005..2001401622932197.164946-UTR-F-serratus_M_contig719:200005..200140Fucus serratus maleUTRF-serratus_M_contig719 200006..200140 +
1690964194.1987524-UTR-F-serratus_M_contig719:200005..2001401690964194.1987524-UTR-F-serratus_M_contig719:200005..200140Fucus serratus maleUTRF-serratus_M_contig719 200006..200140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18393.1prot_F-serratus_M_contig719.18393.1Fucus serratus malepolypeptideF-serratus_M_contig719 199661..200005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18393.1

>prot_F-serratus_M_contig719.18393.1 ID=prot_F-serratus_M_contig719.18393.1|Name=mRNA_F-serratus_M_contig719.18393.1|organism=Fucus serratus male|type=polypeptide|length=115bp
HRVLFLLTRVSPRLQTLFVLPRIATQRQKNRCENQSACISSLCPKVTTST
LVAFCETAATFPGTSYLSAPLAVALSRYVERDHRWSAVCHGISGIGGCEC
TCCLRVVFACVLVA*
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mRNA from alignment at F-serratus_M_contig719:199661..200140+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18393.1 ID=mRNA_F-serratus_M_contig719.18393.1|Name=mRNA_F-serratus_M_contig719.18393.1|organism=Fucus serratus male|type=mRNA|length=480bp|location=Sequence derived from alignment at F-serratus_M_contig719:199661..200140+ (Fucus serratus male)
CATCGTGTGCTTTTTTTGTTGACCAGGGTTTCGCCACGCTTGCAAACATT
ATTCGTCCTTCCCAGGATTGCAACCCAACGGCAAAAAAATCGGTGTGAGA
ATCAGAGCGCATGCATCTCTAGCTTGTGCCCGAAGGTGACGACTTCGACG
CTCGTGGCTTTTTGCGAGACTGCCGCTACTTTTCCCGGTACATCGTACCT
GAGTGCGCCCTTAGCTGTCGCTCTCTCCCGTTACGTTGAACGGGATCATC
GATGGTCTGCCGTCTGCCATGGGATTAGCGGAATTGGTGGGTGTGAGTGT
ACTTGCTGTCTACGCGTAGTATTTGCCTGTGTCCTCGTTGCTTAGAAGTA
CAGGTACGGGTTCGGCCCATATAACTTGGGTCTCTTTGATGCAACAAACG
TGCACATTTGTGACTGTGATTCGTATTATGGGGAAGTACAAGGGGGAGTT
GCTTGCGAGATTAGCTGCGCGCTTGCGGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig719:199661..200140+

>mRNA_F-serratus_M_contig719.18393.1 ID=mRNA_F-serratus_M_contig719.18393.1|Name=mRNA_F-serratus_M_contig719.18393.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig719:199661..200140+ (Fucus serratus male)
CATCGTGTGCTTTTTTTGTTGACCAGGGTTTCGCCACGCTTGCAAACATT
ATTCGTCCTTCCCAGGATTGCAACCCAACGGCAAAAAAATCGGTGTGAGA
ATCAGAGCGCATGCATCTCTAGCTTGTGCCCGAAGGTGACGACTTCGACG
CTCGTGGCTTTTTGCGAGACTGCCGCTACTTTTCCCGGTACATCGTACCT
GAGTGCGCCCTTAGCTGTCGCTCTCTCCCGTTACGTTGAACGGGATCATC
GATGGTCTGCCGTCTGCCATGGGATTAGCGGAATTGGTGGGTGTGAGTGT
ACTTGCTGTCTACGCGTAGTATTTGCCTGTGTCCTCGTTGCTTAGCATCG
TGTGCTTTTTTTGTTGACCAGGGTTTCGCCACGCTTGCAAACATTATTCG
TCCTTCCCAGGATTGCAACCCAACGGCAAAAAAATCGGTGTGAGAATCAG
AGCGCATGCATCTCTAGCTTGTGCCCGAAGGTGACGACTTCGACGCTCGT
GGCTTTTTGCGAGACTGCCGCTACTTTTCCCGGTACATCGTACCTGAGTG
CGCCCTTAGCTGTCGCTCTCTCCCGTTACGTTGAACGGGATCATCGATGG
TCTGCCGTCTGCCATGGGATTAGCGGAATTGGTGGGTGTGAGTGTACTTG
CTGTCTACGCGTAGTATTTGCCTGTGTCCTCGTTGCTTAG
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