mRNA_F-serratus_M_contig719.18403.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig719.18403.1
Unique NamemRNA_F-serratus_M_contig719.18403.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig719.18403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig719contigF-serratus_M_contig719:315400..315950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932196.784244-CDS-F-serratus_M_contig719:315399..3156001622932196.784244-CDS-F-serratus_M_contig719:315399..315600Fucus serratus maleCDSF-serratus_M_contig719 315400..315600 -
1690964194.0697327-CDS-F-serratus_M_contig719:315399..3156001690964194.0697327-CDS-F-serratus_M_contig719:315399..315600Fucus serratus maleCDSF-serratus_M_contig719 315400..315600 -
1622932196.8059804-CDS-F-serratus_M_contig719:315830..3159501622932196.8059804-CDS-F-serratus_M_contig719:315830..315950Fucus serratus maleCDSF-serratus_M_contig719 315831..315950 -
1690964194.086388-CDS-F-serratus_M_contig719:315830..3159501690964194.086388-CDS-F-serratus_M_contig719:315830..315950Fucus serratus maleCDSF-serratus_M_contig719 315831..315950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig719.18403.1prot_F-serratus_M_contig719.18403.1Fucus serratus malepolypeptideF-serratus_M_contig719 315400..315950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig719.18403.1

>prot_F-serratus_M_contig719.18403.1 ID=prot_F-serratus_M_contig719.18403.1|Name=mRNA_F-serratus_M_contig719.18403.1|organism=Fucus serratus male|type=polypeptide|length=107bp
LEARVEETKTKNDGIIKRVGSSLETLRMTFEQEEEEQGTRSTLVVLLQEK
EQAEKRAAEAALAMEACRSTAEQALAQADAVVRVAERETDALREELDGRS
AREAKDF
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mRNA from alignment at F-serratus_M_contig719:315400..315950-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig719.18403.1 ID=mRNA_F-serratus_M_contig719.18403.1|Name=mRNA_F-serratus_M_contig719.18403.1|organism=Fucus serratus male|type=mRNA|length=551bp|location=Sequence derived from alignment at F-serratus_M_contig719:315400..315950- (Fucus serratus male)
CTGGAGGCTCGCGTGGAGGAGACGAAAACTAAAAACGACGGGATTATAAA
GCGGGTTGGATCAAGTCTGGAAACCCTTCGAATGACTTTTGAACAAGAAG
AAGAGGAGCAGGGAACGCGGGTGATCAAAGTTTCGATCTTGTTGTGCTCC
TTCTAATTATGTTAACCGTTCGCTTCAACTTTCGTCCAGAATAGCGTTTC
TGGTGTTACACGGTCTACGCCCCGGTTTTGTGTGCTTCTCAGGCTTAGGA
AGAGAGCGAGCCCCTTCTCTTTCCTGCCGTTGTTACCGTCGTCTGATAAG
TCTATGCTGTAAACGATATCGTGCGCCTTTTTCAACCGTGATGCCATCAG
TCCACCCTCGTCGTTCTTCTTCAAGAGAAAGAGCAGGCCGAGAAGCGAGC
GGCCGAAGCTGCGCTTGCGATGGAAGCTTGTCGCTCCACGGCCGAACAGG
CTCTGGCACAGGCTGATGCGGTTGTTCGCGTCGCAGAGCGTGAGACTGAT
GCCCTTCGAGAAGAGCTCGACGGACGCTCTGCCAGAGAAGCAAAAGATTT
T
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Coding sequence (CDS) from alignment at F-serratus_M_contig719:315400..315950-

>mRNA_F-serratus_M_contig719.18403.1 ID=mRNA_F-serratus_M_contig719.18403.1|Name=mRNA_F-serratus_M_contig719.18403.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig719:315400..315950- (Fucus serratus male)
CTGGAGGCTCGCGTGGAGGAGACGAAAACTAAAAACGACGGGATTATAAA
GCGGGTTGGATCAAGTCTGGAAACCCTTCGAATGACTTTTGAACAAGAAG
AAGAGGAGCAGGGAACGCGGCTGGAGGCTCGCGTGGAGGAGACGAAAACT
AAAAACGACGGGATTATAAAGCGGGTTGGATCAAGTCTGGAAACCCTTCG
AATGACTTTTGAACAAGAAGAAGAGGAGCAGGGAACGCGGTCCACCCTCG
TCGTTCTTCTTCAAGAGAAAGAGCAGGCCGAGAAGCGAGCGGCCGAAGCT
GCGCTTGCGATGGAAGCTTGTCGCTCCACGGCCGAACAGGCTCTGGCACA
GGCTGATGCGGTTGTTCGCGTCGCAGAGCGTGAGACTGATGCCCTTCGAG
AAGAGCTCGACGGACGCTCTGCCAGAGAAGCAAAAGATTTTTCCACCCTC
GTCGTTCTTCTTCAAGAGAAAGAGCAGGCCGAGAAGCGAGCGGCCGAAGC
TGCGCTTGCGATGGAAGCTTGTCGCTCCACGGCCGAACAGGCTCTGGCAC
AGGCTGATGCGGTTGTTCGCGTCGCAGAGCGTGAGACTGATGCCCTTCGA
GAAGAGCTCGACGGACGCTCTGCCAGAGAAGCAAAAGATTTT
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