mRNA_F-serratus_M_contig718.18380.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig718.18380.1
Unique NamemRNA_F-serratus_M_contig718.18380.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig718.18380.1 vs. uniprot
Match: D7FVG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG4_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 9.790e-23
Identity = 239/385 (62.08%), Postives = 273/385 (70.91%), Query Frame = -1 
Query:  404 NAKVPRFQPFGRDGGEGGRVAEGMFEQFGMRSAPKLSRAAAASAAEQEQRALKWIELEMKMRPRAVAEMLEREPRIRQQSSEVMSRRLAWLKNRLRLSEEQVRSLVHRRPSLLCR---DGMESKVXXXXXXXXXXXXXXXXXXXXXXXXLSSGVEGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGALEPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCRGMSMTEEQASAVIRKDARLLLRSTEVLQSKVDFFRNEMGASLEDLKEVLLASPNVLLVSIELVLSPRVAAMRKVGVEPIFDLHWNVVAFGPTGEGFDDWLSRQTRR 1549
            NA  PRFQPFGR GGEG +VAE ++E FG+ +  K S      A ++ +R L W+E +++M  RA+A+M+E+EPRI +Q +  +S RL                     PS+LCR   D ME KVXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     LLLRSTEVL +KV FF  EMGA+LED++ VL+ SPN LL+SI+L+L+PRVA ++  GV+  F  HWN +AFGP GE FD W+ RQ  R
Sbjct:   72 NADAPRFQPFGRAGGEGSKVAERLYEDFGINNLKKYS----PEATDERKRVLTWLEGKVRMSSRAIADMVEQEPRIAEQETGAISARLXXXXXXXXXXXXXXXXXXXXXPSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLDAKVAFFCQEMGATLEDVRAVLMTSPNFLLISIDLMLAPRVATLKDAGVKVSFSAHWNDLAFGPRGEAFDFWVRRQASR 451
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig718.18380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVG4_ECTSI9.790e-2362.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig718contigF-serratus_M_contig718:305601..307362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1762
Cds size1275
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig718.18380.1prot_F-serratus_M_contig718.18380.1Fucus serratus malepolypeptideF-serratus_M_contig718 305975..307249 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932195.2152026-UTR-F-serratus_M_contig718:305600..3059741622932195.2152026-UTR-F-serratus_M_contig718:305600..305974Fucus serratus maleUTRF-serratus_M_contig718 305601..305974 +
1690964193.3999147-UTR-F-serratus_M_contig718:305600..3059741690964193.3999147-UTR-F-serratus_M_contig718:305600..305974Fucus serratus maleUTRF-serratus_M_contig718 305601..305974 +
1622932195.2540417-UTR-F-serratus_M_contig718:307249..3073621622932195.2540417-UTR-F-serratus_M_contig718:307249..307362Fucus serratus maleUTRF-serratus_M_contig718 307250..307362 +
1690964193.4533389-UTR-F-serratus_M_contig718:307249..3073621690964193.4533389-UTR-F-serratus_M_contig718:307249..307362Fucus serratus maleUTRF-serratus_M_contig718 307250..307362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932195.233579-CDS-F-serratus_M_contig718:305974..3072491622932195.233579-CDS-F-serratus_M_contig718:305974..307249Fucus serratus maleCDSF-serratus_M_contig718 305975..307249 +
1690964193.4110377-CDS-F-serratus_M_contig718:305974..3072491690964193.4110377-CDS-F-serratus_M_contig718:305974..307249Fucus serratus maleCDSF-serratus_M_contig718 305975..307249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig718.18380.1

>prot_F-serratus_M_contig718.18380.1 ID=prot_F-serratus_M_contig718.18380.1|Name=mRNA_F-serratus_M_contig718.18380.1|organism=Fucus serratus male|type=polypeptide|length=425bp
MGACYQVLRCLLVCLESQSSKPSPVGPNATTFQCKSKIGSTPTLRIAATL
GLKTNSMLTRRTFGLASKTSLRSSSDAPISFLKKSTLLCSTSVLRSRSRA
SFLMTADACSSVMLMPRQSHSTVEARAGLSWVRNIRGCLKSVFLTPASSK
SKSIFKNSSVGSSFRSLLRVSSHGYARTRSRSASTPICSVSCNHLRRGSS
APSTLLVITCGQEVTTSPSSSRDRRRRFESHSSLAPIPPPSTPELRRFGA
EATIDAASSSSRPSVSCSHRTFDSMPSLHRSDGLRCTRLRTCSSLSRSRF
FSQASRRDITSELCCRMRGSRSSISATARGRIFISSSIHFNALCSCSAAD
AAAARDNFGALLIPNCSNMPSATLPPSPPSRPNGWKRGTLAFSCDRLSRS
FVTFSLGVLCRPPPHPWSGGALSW*
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mRNA from alignment at F-serratus_M_contig718:305601..307362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig718.18380.1 ID=mRNA_F-serratus_M_contig718.18380.1|Name=mRNA_F-serratus_M_contig718.18380.1|organism=Fucus serratus male|type=mRNA|length=1762bp|location=Sequence derived from alignment at F-serratus_M_contig718:305601..307362+ (Fucus serratus male)
TAACATGTTTGAACGACTCCAAACCAGTCTACTCAACATTTAGATATACC
CGGTGGACATTTTGGTACAACTTTCAAAAACGTTTAGACATTTCTAAGGG
AATGTGGTTTAAACTGGGGCCTTACAGCAGAGTTCCACTTGCAAAAAAAA
AGTCATAATGTTATAGCATTGCCAACTCTTTCACTCGAGGCCATACCTTT
CCCCTTCAACGCCTGGATTAGAGATCCAGAATCTTCCGACAGACGTAAAT
CACGAAAGTCTCATCGACGTTCTGCGCTCAAAAAAATGACCCCGCCCGCG
AATCATTTCAAGAATTTTTTCCCGATGCTCCATCCGAATAAATGTACTTC
GTGTAACGGTTGTGTGACGTTTCGATGGGAGCATGCTATCAGGTCCTGCG
ATGTCTTCTCGTCTGCCTCGAAAGCCAATCGTCGAAACCTTCCCCCGTCG
GCCCGAACGCAACGACGTTCCAATGCAAGTCGAAGATAGGCTCAACCCCC
ACCTTACGCATAGCCGCCACTCTAGGACTCAAGACCAACTCGATGCTGAC
GAGAAGGACGTTCGGGCTGGCCAGCAAAACTTCCTTGAGGTCCTCCAGCG
ATGCTCCCATCTCGTTCCTGAAAAAGTCCACCTTGCTCTGCAGCACTTCC
GTGCTCCGAAGCAGAAGTCGCGCATCCTTTCTGATGACAGCCGACGCCTG
CTCTTCCGTCATGCTCATGCCACGACAAAGCCACTCTACGGTGGAAGCGA
GGGCGGGCCTGAGCTGGGTGAGAAACATACGCGGTTGCCTGAAGAGTGTC
TTCCTGACGCCCGCCTCGTCCAAGAGCAAGTCGATCTTCAAAAACTCGAG
CGTGGGCTCAAGTTTTCGCTCTTTACTGAGGGTCAGCAGCCACGGGTACG
CCAGGACTCGCTCGCGTAGCGCCTCCACGCCGATCTGCAGCGTATCTTGC
AACCACCTGAGGCGCGGCTCGAGCGCACCATCGACGCTGCTGGTCATCAC
CTGCGGACAAGAAGTAACCACCAGCCCGAGCTCTTCGCGCGACAGGCGTA
GGCGCTTCGAGAGCCACTCCAGCTTGGCTCCCATCCCGCCCCCCTCGACG
CCGGAGCTGAGAAGGTTCGGGGCCGAAGCTACCATCGACGCCGCCTCGTC
GTCGTCCAGACCCAGCGTTTCTTGCAGCCATCGCACCTTCGACTCCATGC
CGTCTCTACACAGAAGCGACGGTCTCCGGTGCACCAGGCTGCGGACCTGT
TCCTCGCTGAGTCGGAGCCGATTTTTCAGCCAGGCCAGTCGACGGGACAT
CACCTCGGAGCTTTGCTGTCGGATGCGCGGCTCTCGCTCCAGCATCTCCG
CAACCGCGCGCGGTCGCATCTTCATCTCTAGCTCGATCCACTTTAACGCT
CTCTGCTCTTGCTCCGCCGCCGACGCAGCCGCCGCCCGGGATAACTTCGG
TGCGCTCCTCATCCCAAACTGCTCGAACATGCCCTCGGCCACCCTGCCGC
CCTCTCCGCCGTCTCGTCCGAACGGCTGGAAGCGAGGAACCTTGGCATTC
TCCTGCGACCGCCTCTCCCGTTCCTTCGTCACCTTTTCTCTTGGGGTCCT
GTGTCGTCCACCTCCGCACCCTTGGTCCGGTGGCGCCTTGTCATGGTAGG
ACCGAGCGCGCGTCGCACAGTTGGGTTGCTCCGACGAGAAACGCTTCGGG
ACGCTGCTGCTTGACCGGCAGGCGAACAAAGCGCGTTGAGACACACGAAG
GCCTCCTAGTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig718:305601..307362+

>mRNA_F-serratus_M_contig718.18380.1 ID=mRNA_F-serratus_M_contig718.18380.1|Name=mRNA_F-serratus_M_contig718.18380.1|organism=Fucus serratus male|type=CDS|length=2550bp|location=Sequence derived from alignment at F-serratus_M_contig718:305601..307362+ (Fucus serratus male)
ATGGGAGCATGCTATCAGGTCCTGCGATGTCTTCTCGTCTGCCTCGAAAG
CCAATCGTCGAAACCTTCCCCCGTCGGCCCGAACGCAACGACGTTCCAAT
GCAAGTCGAAGATAGGCTCAACCCCCACCTTACGCATAGCCGCCACTCTA
GGACTCAAGACCAACTCGATGCTGACGAGAAGGACGTTCGGGCTGGCCAG
CAAAACTTCCTTGAGGTCCTCCAGCGATGCTCCCATCTCGTTCCTGAAAA
AGTCCACCTTGCTCTGCAGCACTTCCGTGCTCCGAAGCAGAAGTCGCGCA
TCCTTTCTGATGACAGCCGACGCCTGCTCTTCCGTCATGCTCATGCCACG
ACAAAGCCACTCTACGGTGGAAGCGAGGGCGGGCCTGAGCTGGGTGAGAA
ACATACGCGGTTGCCTGAAGAGTGTCTTCCTGACGCCCGCCTCGTCCAAG
AGCAAGTCGATCTTCAAAAACTCGAGCGTGGGCTCAAGTTTTCGCTCTTT
ACTGAGGGTCAGCAGCCACGGGTACGCCAGGACTCGCTCGCGTAGCGCCT
CCACGCCGATCTGCAGCGTATCTTGCAACCACCTGAGGCGCGGCTCGAGC
GCACCATCGACGCTGCTGGTCATCACCTGCGGACAAGAAGTAACCACCAG
CCCGAGCTCTTCGCGCGACAGGCGTAGGCGCTTCGAGAGCCACTCCAGCT
TGGCTCCCATCCCGCCCCCCTCGACGCCGGAGCTGAGAAGGTTCGGGGCC
GAAGCTACCATCGACGCCGCCTCGTCGTCGTCCAGACCCAGCGTTTCTTG
CAGCCATCGCACCTTCGACTCCATGCCGTCTCTACACAGAAGCGACGGTC
TCCGGTGCACCAGGCTGCGGACCTGTTCCTCGCTGAGTCGGAGCCGATTT
TTCAGCCAGGCCAGTCGACGGGACATCACCTCGGAGCTTTGCTGTCGGAT
GCGCGGCTCTCGCTCCAGCATCTCCGCAACCGCGCGCGGTCGCATCTTCA
TCTCTAGCTCGATCCACTTTAACGCTCTCTGCTCTTGCTCCGCCGCCGAC
GCAGCCGCCGCCCGGGATAACTTCGGTGCGCTCCTCATCCCAAACTGCTC
GAACATGCCCTCGGCCACCCTGCCGCCCTCTCCGCCGTCTCGTCCGAACG
GCTGGAAGCGAGGAACCTTGGCATTCTCCTGCGACCGCCTCTCCCGTTCC
TTCGTCACCTTTTCTCTTGGGGTCCTGTGTCGTCCACCTCCGCACCCTTG
GTCCGGTGGCGCCTTGTCATGGTAGATGGGAGCATGCTATCAGGTCCTGC
GATGTCTTCTCGTCTGCCTCGAAAGCCAATCGTCGAAACCTTCCCCCGTC
GGCCCGAACGCAACGACGTTCCAATGCAAGTCGAAGATAGGCTCAACCCC
CACCTTACGCATAGCCGCCACTCTAGGACTCAAGACCAACTCGATGCTGA
CGAGAAGGACGTTCGGGCTGGCCAGCAAAACTTCCTTGAGGTCCTCCAGC
GATGCTCCCATCTCGTTCCTGAAAAAGTCCACCTTGCTCTGCAGCACTTC
CGTGCTCCGAAGCAGAAGTCGCGCATCCTTTCTGATGACAGCCGACGCCT
GCTCTTCCGTCATGCTCATGCCACGACAAAGCCACTCTACGGTGGAAGCG
AGGGCGGGCCTGAGCTGGGTGAGAAACATACGCGGTTGCCTGAAGAGTGT
CTTCCTGACGCCCGCCTCGTCCAAGAGCAAGTCGATCTTCAAAAACTCGA
GCGTGGGCTCAAGTTTTCGCTCTTTACTGAGGGTCAGCAGCCACGGGTAC
GCCAGGACTCGCTCGCGTAGCGCCTCCACGCCGATCTGCAGCGTATCTTG
CAACCACCTGAGGCGCGGCTCGAGCGCACCATCGACGCTGCTGGTCATCA
CCTGCGGACAAGAAGTAACCACCAGCCCGAGCTCTTCGCGCGACAGGCGT
AGGCGCTTCGAGAGCCACTCCAGCTTGGCTCCCATCCCGCCCCCCTCGAC
GCCGGAGCTGAGAAGGTTCGGGGCCGAAGCTACCATCGACGCCGCCTCGT
CGTCGTCCAGACCCAGCGTTTCTTGCAGCCATCGCACCTTCGACTCCATG
CCGTCTCTACACAGAAGCGACGGTCTCCGGTGCACCAGGCTGCGGACCTG
TTCCTCGCTGAGTCGGAGCCGATTTTTCAGCCAGGCCAGTCGACGGGACA
TCACCTCGGAGCTTTGCTGTCGGATGCGCGGCTCTCGCTCCAGCATCTCC
GCAACCGCGCGCGGTCGCATCTTCATCTCTAGCTCGATCCACTTTAACGC
TCTCTGCTCTTGCTCCGCCGCCGACGCAGCCGCCGCCCGGGATAACTTCG
GTGCGCTCCTCATCCCAAACTGCTCGAACATGCCCTCGGCCACCCTGCCG
CCCTCTCCGCCGTCTCGTCCGAACGGCTGGAAGCGAGGAACCTTGGCATT
CTCCTGCGACCGCCTCTCCCGTTCCTTCGTCACCTTTTCTCTTGGGGTCC
TGTGTCGTCCACCTCCGCACCCTTGGTCCGGTGGCGCCTTGTCATGGTAG
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