mRNA_F-serratus_M_contig717.18374.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig717.18374.1
Unique NamemRNA_F-serratus_M_contig717.18374.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig717.18374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig717contigF-serratus_M_contig717:324925..330308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size1987
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig717.18374.1prot_F-serratus_M_contig717.18374.1Fucus serratus malepolypeptideF-serratus_M_contig717 328117..328747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932194.661483-UTR-F-serratus_M_contig717:324924..3250121622932194.661483-UTR-F-serratus_M_contig717:324924..325012Fucus serratus maleUTRF-serratus_M_contig717 324925..325012 +
1690964193.136103-UTR-F-serratus_M_contig717:324924..3250121690964193.136103-UTR-F-serratus_M_contig717:324924..325012Fucus serratus maleUTRF-serratus_M_contig717 324925..325012 +
1622932194.6825051-UTR-F-serratus_M_contig717:328087..3281161622932194.6825051-UTR-F-serratus_M_contig717:328087..328116Fucus serratus maleUTRF-serratus_M_contig717 328088..328116 +
1690964193.1472852-UTR-F-serratus_M_contig717:328087..3281161690964193.1472852-UTR-F-serratus_M_contig717:328087..328116Fucus serratus maleUTRF-serratus_M_contig717 328088..328116 +
1622932194.7488189-UTR-F-serratus_M_contig717:328747..3303081622932194.7488189-UTR-F-serratus_M_contig717:328747..330308Fucus serratus maleUTRF-serratus_M_contig717 328748..330308 +
1690964193.182066-UTR-F-serratus_M_contig717:328747..3303081690964193.182066-UTR-F-serratus_M_contig717:328747..330308Fucus serratus maleUTRF-serratus_M_contig717 328748..330308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932194.7079995-CDS-F-serratus_M_contig717:328116..3281851622932194.7079995-CDS-F-serratus_M_contig717:328116..328185Fucus serratus maleCDSF-serratus_M_contig717 328117..328185 +
1690964193.1580014-CDS-F-serratus_M_contig717:328116..3281851690964193.1580014-CDS-F-serratus_M_contig717:328116..328185Fucus serratus maleCDSF-serratus_M_contig717 328117..328185 +
1622932194.7292452-CDS-F-serratus_M_contig717:328507..3287471622932194.7292452-CDS-F-serratus_M_contig717:328507..328747Fucus serratus maleCDSF-serratus_M_contig717 328508..328747 +
1690964193.1734097-CDS-F-serratus_M_contig717:328507..3287471690964193.1734097-CDS-F-serratus_M_contig717:328507..328747Fucus serratus maleCDSF-serratus_M_contig717 328508..328747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig717.18374.1

>prot_F-serratus_M_contig717.18374.1 ID=prot_F-serratus_M_contig717.18374.1|Name=mRNA_F-serratus_M_contig717.18374.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MFRLSSVVWALAAFAASFATAGEVTVCVISKDVAPVKEFSTKAIAEDKYD
DTMAAGGLLGPCSEYLGQLCDDGDFCTVDYDIETNTCYALPRDVVDNCAK
DE*
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mRNA from alignment at F-serratus_M_contig717:324925..330308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig717.18374.1 ID=mRNA_F-serratus_M_contig717.18374.1|Name=mRNA_F-serratus_M_contig717.18374.1|organism=Fucus serratus male|type=mRNA|length=5384bp|location=Sequence derived from alignment at F-serratus_M_contig717:324925..330308+ (Fucus serratus male)
CACCACCTCACCACCTCACCACTTGTCGGACAACTTGCTGCAGCAGACGA
CGCCTCTCTTCCTCCAGTTCTAGCAGCACCGAGCCAAGGTGAGGCATTTG
CGTCAGATCCACAACAGGCAAAAGATGGCGACCCTTGCGACTTATCACAA
CAAGGTATCGTCGGCGCGTTGGATTGTACTTACTGTATTGTCTTGCCAAG
CTCATTCGCACCCACAACGGGCTGCGAATGTGCGAGCTGGTCAGGAGCAG
AGTAGAAGTAGAGATTCTGGTTCTCCTATCACAGTTATATTTTCCATGTT
GTTGGTGGAAAGTTCCTCCTTGTGAGGGAATGCTATCTGTTTTCCGCCGA
AGCACTCTTGATACTACTCTACCTCCAGGCCCGTCTCGTCTCTAACTAGT
AACCCATAATGCATTGTGCTGAAGATGTACTAGCCTCGCGTTTGCTTCAC
CAGCACGACTTGAAGCAGTATCCGTTGCTCGCACTCTAACTCAGCACGCC
CAAGTGTGCACGAAGTCTCTAATATAATAGCACCACCGAGGACACCTTTC
CCATCCATGAAAAAAACCCAGCTGAATGATTTTTTAACTTTTTGTAAGAA
TATTTATCCGCAGCACGAGGGGGTAGTTTAGGCGCCGAACCGCCGGCTTT
TTGCTTGAAATATTCTGCAGTATAAACTGGATCGGGGTCGGCGTTTTTCG
CTCGAAATCGGGCTCGAGCTTCCATAAACTATTGTCATATACGCATTAAA
AGTATTTTTTTTGTACAGAGACTCCCCTTGTACGGACGAACCTTCTATAC
TGTAGTAACGAAAGTGTCATACGCATCGCTGTCCAGTACAAAAAAAATGT
AACATTTTTTCTTGTGTTGGTATGACTATATTTTAAGCCCTCATAAAAGG
GCCGATGTATAGTATGATTATAAACATATTTAGCTGTGTACCCAAATGTT
TTTGTTTTGTTTTTCGTCTGGTGTCTCTGCATGGCGACTTCCAATATAAG
TGTACAGTATAACGGTGGGTTTCTCCCCGACATTATACTGTTGACCCAAT
GTCACTACCAGCGGGAAACCCGTTTAAATGCCATGAAGAGGGGTTTTGTT
ATCTTTGCAGCCTATGATCCCACCTGAAAGTTTTGACATTTTTTTCTCTG
ACTGGGGAATGCCCAGAAGATCGTTCAGATTTTTCTATAAACAGTACCTG
GTAGCAGCAGCAGCAGCAATAGTTTACAAGTAGTTGCCGTCTCTGCCCAT
TGCGGCCTCCAAGATTGTACAAGCTGTACCTTGCGCATGGTGCACACCTC
TCAACCTACGTTTGCACGGTCGCTACGTAGATTTTCGTCTAAAACCCTAG
ATGGTATCGTTGTATTGATCAATAAGCGATGTCCATTTTATCCCCAAGTG
TTTCCCACGCCCAAAGCAGCAGTTTTCGGGAAAAGCTGCAGTAGCAGTAG
CAGTAGCAGTAGCAGCAGCAGCAGTAGGGTTCGATGTAACTACGTCTACA
GGACTTGTTGGTGATTATGCACTATTATAGCTCTATAGTGTTGGTGTTTG
CCGGATAAATCCCGCTTGCGTTCTTGTGGGACCATTTCCCGACTTTTCCC
CGGCAAGGTTCGGCCAGTAAGACCAGATCTATCTCTGACCTTCGTGGCGA
TCCTGCCACCTTAGCCCCTGTCGCGGTCGTCTTATTCCTCCGACAGTGCC
GTATTCGGCGGAGTCGTCCCAGATTCCCCGCCCCCCTCACGGCGTTCCTC
CTCCCGCTTTACTCCTCCCTTGCGCTCACTGTAGCTCCAACCTTGAGCTG
AGCAGGCAACCTTCCGGGTACAAACGGTCCAGCTTTCCCATGACGTCGTT
CAAGGTGTCCTTGACCACCCCTCGTAGAGACCGCTTGAAAATCTGCTGCT
GCTGCAGGCACTCTGTATATTCAGTACATTCTGATGAGAGGATACGACAA
ACTTCAAGAGTATTGTTTGTTAATTGTAACAGGTATTACTTAAGGGGTTT
ACCCGGTCTCGGGTCCTGGGAGAGATGGACGGAGATGTATCTTTGTTGAT
TTTCCTTTGTTAGGGGAGAGAGCTGTCGTCTACCATGGAGCAGCTCTCAC
CGGCCAATGATTATCTTGTACGAGGAGTAACACAAGGATTGCTGTAGCAA
AGTGGCGTGACCTATGATGACCCGTTACTCAAACTACCTTGAGGACTGTT
TGTTGGCTTTGCGCCGACAATCTCTCGGTGGTAGAGGCAATCGGTACGCA
TTTGCGTGACCTCATAAAAGTCGGGAGTGATCCGACGGTGATTGTTAGAT
AGGCGCCGTAGTGGAAAGTGGAAGGGATGAGAGGAACCTGTGAGTGAGCA
CCCGATTTAGCCTGAGTTTAGAGAATGAGCGGACTGACGAGGGACGGGAC
GACAAAACCTGTCTCGCTAGTCCAAACTTTCAGGCGTTGACAAGAACAGG
AAAAAAAAAACTGTTCACTGACTACGAGCAGGGTGAGCACAACCATCCTA
ATACCGTTTGAGACCAAATCTGCTAAATATTATGGAGTAACTGGGCGTTT
ATTTAATGTGATCTTATTATAGTGAGAGTAAGTACTGTTACAGGAAGCAG
AGGAGAGTAGATAACCACCAGACGAGAAATATATACAGTATAATATATAG
AGCTGCTATGTCATGTGTCTTGTGGTGTAATGATGCGCAGTGTGTGCGAA
TCAACTCCTCCGATCTGTGTGTCTGCCTGCGTCTGCCTGTGCTTTACGTT
CCCATTCTTCACTCATATGGATACTGACCGACAAGAGATTAGAGTCGGGT
CCTACTAAAATTATAGAACAAATGATGTTGGACGTTGCCTTCCTACCTTT
CTTTGGTGTTTTTTTCTTCGCATACTTGTCATTCTTATGATGATTATCGT
TCTTGGCTGTTCGTCCTCGCACGGACCGTGGGGACCTCCCTCCGCGATTT
TGTACTTCATTTTCTAAAGACAAATGCTTTTTTTTAGCGTAACTACTGCC
TGCGCTACGGTTGGTTATTATTGTGTTGCAGCCAATTCCTTCCCTCGCGA
ACCGAAGAATTCAACCCGTTTTTTTTTTTTTGTTTTTTAAGGATATTATC
CAGAGGGGCTTCTTGCACTCACCCTGCGTGCGGCCGTTCTCCCTCTTGTA
TGCTCGTCTCCAGGTTAAATAATAATAATACCCAGTACCATCATGTTCCG
GCTGTCTTCAGTGGTGTGGGCTCTGGCTGCTTTCGCGGCCTCCTTTGCTA
CCGCTGGCGAAGTGAGGAAACTAGTATTTATGTCATGACAAAGAATGATA
TTATTATGGTGCCATACGCTAGTAGGAGAAAAAGTGTCTCCTACTGTTTG
CGGGTCCCTTCAATCAGCGTAAACAGACACACTTCATGTACAATAATTAG
AAAACATCGGTCATCGGTCATCGGTCATCGGTTACCGCAGGCACTTACTT
TGTCCGTTTCTCTGAATACAGTATCAAGGTTTTATACAAATTATTACGGT
ATAATTTTGCACAAAACGCAAAAAAGAAAACACTGAGCCGACTTTCTAGT
TTTACGAACGAATTGGTGTGTTATAATGTACAGGTAACCGTTTGCGTCAT
CTCTAAGGACGTCGCACCCGTGAAGGAGTTCAGCACGAAGGCCATCGCCG
AGGACAAATACGACGACACGATGGCGGCGGGTGGTCTCTTGGGCCCGTGC
TCCGAGTACCTCGGACAGCTCTGCGACGATGGAGACTTCTGCACTGTGGA
CTACGACATCGAAACCAATACTTGTTATGCATTGCCCCGTGATGTGGTGG
ATAACTGCGCCAAGGACGAGTGATGATTCAGTTTCCACACCATGTGAACT
ACTGGAGGTTTACCGATTGATCAACAACATCGGGCTGCTAATCCGGTGTC
CCGACGATGAGGGTTTGGCTATGTAGGGCGTGTGCAGGGGGGGTATTATT
TAGTGCTTGGGGCGAGTACTTATTGGTTCACGAAACGCAAGGGCGCAGCC
TTGACCCAGCGTTTCGTGTTCAAGAGTAGTCGGATCATATATATATATTT
GGAACGCCATTTGATTTTTGTTTCGATTCTGCTCTATTGTACAAGCAAGC
ATGGTTGTGGTCGTGCTCTCATTCCACAGGCTTTCCCTCGCAGGATGGGT
CTCCCCCTCACTCGTTGTGGAGACACTCAGCCCTGTTTTTTCTGTGGATA
AGTCGGTTGGCGAAGCGCGTTACGTACAGTTTCGCATGTAGAGCGCCTCC
TCCGTGAATTGTATCGGCTTCCTGCCGCCCATGGGCTCTTCTAGGCAGCA
CCTAGCTAGAGGGTTTTGGTGTTCACCCACCACTTTTGTTTCAACTTTTG
GGTAGGCCAATCAAATGAGCCGTGCGATGTAGACGTTACGGTTGAGCGAC
GTGCGCGCGACACTTCGATTCGGGTTTTCTCAAGACTCTTCACCCGCACA
TTTTTTAGAAATGTTGCAAAGTTAAGGCTTTTGCTGCTACAAGCTGAAAA
CATCTGCGGCGAAAACTTCTCGACGGGGTGTAGGGCCAGTTAGAATGTTG
TGGCTCACAGCTCGGCTACTAAAATAACGGCGGTGTAACATCAAGAGAGA
GTAGAAGTGGAGCGCGCCACTTTTGTTTTGTGAAAGCACTAGCTCTATGC
TTGTGATCACTTACTCATCAAGCGGATAACATATTTAGCTTTTTGTAGAA
GGCTTACTGTTGATGTTGCGTCGATGTGACGTTGGGAGACACCTACTGCG
CCCTTTTTTCAGGCGCAGCGCAGTACGCACAACCTGCCACTTTCGATCAG
CAATTTTAAGAAGTGTGCGTATATGCAGTCGAACCGATTGTACCTGTGAT
GTGTTTAACGTTTGCCTCGCTCGGTACGAGTGTTGTGTCGCGATTTAACG
TAGCAGAGTAGGCGAAATCAACACCTGACCCCTTGGCTTTTTTCTAATAT
TTTTGTTCCTGTGAAAGATTGTACGGAGTTCATTCACTAAGGCACGTCAC
TTTTTATTATGTGGGTAAGTTATGCGTCACAACGCGGTTTTGGACAGGGA
TGGAGGTAGGCGTGATTATTACGGTATATACACAGTTGTTGTAAAACTAG
CATGTTTTTAAGCGAGGAGGACATGTCATAGCGCCGATTGTTATTTGATT
AAACAAGAACTTGTGCAAGCATCCGATCAGTATGGCTATACTTTCTCTTC
TATTTTATTTCTGCGCGAAGCTGCATAGTTCGCGGAAAAGAACTCACTAT
GTTGAAAAAACAGAGAAACAAAAAGCTTGGAAAAGTCGGATTGTTGTGAG
GTAGATTGATCAGCTGCGCGAACGTATAAGTTGGATCGTCCGGCTCAAAA
CACGGAACAAGTCTTGACATAAATTATCATCCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig717:324925..330308+

>mRNA_F-serratus_M_contig717.18374.1 ID=mRNA_F-serratus_M_contig717.18374.1|Name=mRNA_F-serratus_M_contig717.18374.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig717:324925..330308+ (Fucus serratus male)
ATGTTCCGGCTGTCTTCAGTGGTGTGGGCTCTGGCTGCTTTCGCGGCCTC
CTTTGCTACCGCTGGCGAAATGTTCCGGCTGTCTTCAGTGGTGTGGGCTC
TGGCTGCTTTCGCGGCCTCCTTTGCTACCGCTGGCGAAGTAACCGTTTGC
GTCATCTCTAAGGACGTCGCACCCGTGAAGGAGTTCAGCACGAAGGCCAT
CGCCGAGGACAAATACGACGACACGATGGCGGCGGGTGGTCTCTTGGGCC
CGTGCTCCGAGTACCTCGGACAGCTCTGCGACGATGGAGACTTCTGCACT
GTGGACTACGACATCGAAACCAATACTTGTTATGCATTGCCCCGTGATGT
GGTGGATAACTGCGCCAAGGACGAGTGAGTAACCGTTTGCGTCATCTCTA
AGGACGTCGCACCCGTGAAGGAGTTCAGCACGAAGGCCATCGCCGAGGAC
AAATACGACGACACGATGGCGGCGGGTGGTCTCTTGGGCCCGTGCTCCGA
GTACCTCGGACAGCTCTGCGACGATGGAGACTTCTGCACTGTGGACTACG
ACATCGAAACCAATACTTGTTATGCATTGCCCCGTGATGTGGTGGATAAC
TGCGCCAAGGACGAGTGA
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