mRNA_F-serratus_M_contig7154.18368.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7154.18368.1
Unique NamemRNA_F-serratus_M_contig7154.18368.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7154.18368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7154contigF-serratus_M_contig7154:16384..16797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7154.18368.1prot_F-serratus_M_contig7154.18368.1Fucus serratus malepolypeptideF-serratus_M_contig7154 16390..16755 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932194.299714-UTR-F-serratus_M_contig7154:16383..163891622932194.299714-UTR-F-serratus_M_contig7154:16383..16389Fucus serratus maleUTRF-serratus_M_contig7154 16384..16389 +
1690964193.0327444-UTR-F-serratus_M_contig7154:16383..163891690964193.0327444-UTR-F-serratus_M_contig7154:16383..16389Fucus serratus maleUTRF-serratus_M_contig7154 16384..16389 +
1622932194.3438933-UTR-F-serratus_M_contig7154:16755..167971622932194.3438933-UTR-F-serratus_M_contig7154:16755..16797Fucus serratus maleUTRF-serratus_M_contig7154 16756..16797 +
1690964193.057649-UTR-F-serratus_M_contig7154:16755..167971690964193.057649-UTR-F-serratus_M_contig7154:16755..16797Fucus serratus maleUTRF-serratus_M_contig7154 16756..16797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932194.321109-CDS-F-serratus_M_contig7154:16389..167551622932194.321109-CDS-F-serratus_M_contig7154:16389..16755Fucus serratus maleCDSF-serratus_M_contig7154 16390..16755 +
1690964193.0441093-CDS-F-serratus_M_contig7154:16389..167551690964193.0441093-CDS-F-serratus_M_contig7154:16389..16755Fucus serratus maleCDSF-serratus_M_contig7154 16390..16755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7154.18368.1

>prot_F-serratus_M_contig7154.18368.1 ID=prot_F-serratus_M_contig7154.18368.1|Name=mRNA_F-serratus_M_contig7154.18368.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MSAEGVPIKPSSLRPQYPQTRSVLQLQPQRSLCERTHRRFRFRRRYHPHN
SNFWLRYAYAPRSRGTASRGEISVYQCALYAKRAVSTKQVPYGATLVSPV
EPMLPSPFSILWLGAGIGLRI*
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mRNA from alignment at F-serratus_M_contig7154:16384..16797+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7154.18368.1 ID=mRNA_F-serratus_M_contig7154.18368.1|Name=mRNA_F-serratus_M_contig7154.18368.1|organism=Fucus serratus male|type=mRNA|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig7154:16384..16797+ (Fucus serratus male)
TTTTGTATGAGCGCAGAGGGCGTTCCGATCAAGCCTTCAAGCTTGAGGCC
GCAGTACCCACAGACCCGCTCCGTTCTTCAGCTTCAGCCGCAGCGGTCAC
TATGCGAACGGACCCACCGCCGCTTCCGCTTCCGCCGGCGCTACCACCCC
CACAACTCCAATTTCTGGTTGCGCTACGCGTACGCTCCCCGCAGCCGCGG
GACCGCCTCCCGAGGAGAGATATCTGTCTACCAGTGCGCCCTTTACGCGA
AAAGAGCAGTCTCGACGAAACAGGTACCGTACGGTGCAACCCTTGTGTCG
CCAGTTGAACCAATGCTCCCCTCTCCCTTCAGTATACTGTGGTTGGGGGC
GGGTATAGGCCTGCGAATATAGCCGAAGTTAGATCTCAGTCCCCTTTGAT
TCCTCTTTATGTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7154:16384..16797+

>mRNA_F-serratus_M_contig7154.18368.1 ID=mRNA_F-serratus_M_contig7154.18368.1|Name=mRNA_F-serratus_M_contig7154.18368.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig7154:16384..16797+ (Fucus serratus male)
ATGAGCGCAGAGGGCGTTCCGATCAAGCCTTCAAGCTTGAGGCCGCAGTA
CCCACAGACCCGCTCCGTTCTTCAGCTTCAGCCGCAGCGGTCACTATGCG
AACGGACCCACCGCCGCTTCCGCTTCCGCCGGCGCTACCACCCCCACAAC
TCCAATTTCTGGTTGCGCTACGCGTACGCTCCCCGCAGCCGCGGGACCGC
CTCCCGAGGAGAGATATCTGTCTACCAGTGCGCCCTTTACGCGAAAAGAG
CAGTCTCGACGAAACAGGTACCGTACGGTGCAACCCTTGTGTCGCCAGTT
GAACCAATGCTCCCCTCTCCCTTCAGTATACTGTGGTTGGGGGCGGGTAT
AGGCCTGCGAATATAGATGAGCGCAGAGGGCGTTCCGATCAAGCCTTCAA
GCTTGAGGCCGCAGTACCCACAGACCCGCTCCGTTCTTCAGCTTCAGCCG
CAGCGGTCACTATGCGAACGGACCCACCGCCGCTTCCGCTTCCGCCGGCG
CTACCACCCCCACAACTCCAATTTCTGGTTGCGCTACGCGTACGCTCCCC
GCAGCCGCGGGACCGCCTCCCGAGGAGAGATATCTGTCTACCAGTGCGCC
CTTTACGCGAAAAGAGCAGTCTCGACGAAACAGGTACCGTACGGTGCAAC
CCTTGTGTCGCCAGTTGAACCAATGCTCCCCTCTCCCTTCAGTATACTGT
GGTTGGGGGCGGGTATAGGCCTGCGAATATAG
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