mRNA_F-serratus_M_contig7150.18367.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7150.18367.1
Unique NamemRNA_F-serratus_M_contig7150.18367.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7150.18367.1 vs. uniprot
Match: A0A5N6NZN2_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NZN2_9ASTR)

HSP 1 Score: 90.9 bits (224), Expect = 5.650e-19
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 DITGPFHATSLGGNRNAMLHVDDFTQFKVIHFLKHKSDAAKELHKLVAEHIGPSGIKIGTVRTDRGGDFKG-EFQSLQEELGIKRKTAPPYTPQYNGVVERVLGLLRNNTVI 333
            D+ GP   +++GGN+   L VDD++++  ++ LK K++A     K  A     S +K+GT+RTDRGG+F   EF    E+ GIKR+   PYTPQ NGVVER     RN TV+
Sbjct:  534 DLCGPITPSTMGGNKFFFLLVDDYSRYMWVYLLKSKNEAFLNFKKFKATVEKESELKVGTLRTDRGGEFVSKEFLQFCEDHGIKRQLTAPYTPQQNGVVER-----RNRTVM 640          
BLAST of mRNA_F-serratus_M_contig7150.18367.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.300e-17
Identity = 44/111 (39.64%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 DITGPFHATSLGGNRNAMLHVDDFTQFKVIHFLKHKSDAAKELHKLVAEHIG---PSGIKIGTVRTDRGGDF-KGEFQSLQEELGIKRKTAPPYTPQYNGVVERVLGLLRN 321
            D++G     SLGG    ++  DD+T++  ++FLKHKSDAA+   + +AE+     PS + +  VR+D GG+F +GEF  +  +  IK++  P ++P+YNGV ER LGL+++
Sbjct:  739 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKD 847          
BLAST of mRNA_F-serratus_M_contig7150.18367.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.310e-17
Identity = 44/111 (39.64%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 DITGPFHATSLGGNRNAMLHVDDFTQFKVIHFLKHKSDAAKELHKLVAEHIG---PSGIKIGTVRTDRGGDF-KGEFQSLQEELGIKRKTAPPYTPQYNGVVERVLGLLRN 321
            D++G     SLGG    ++  DD+T++  ++FLKHKSDAA+   + +AE+     PS + +  VR+D GG+F +GEF  +  +  IK++  P ++P+YNGV ER LGL+++
Sbjct:  574 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKD 682          
BLAST of mRNA_F-serratus_M_contig7150.18367.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.310e-17
Identity = 44/111 (39.64%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 DITGPFHATSLGGNRNAMLHVDDFTQFKVIHFLKHKSDAAKELHKLVAEHIG---PSGIKIGTVRTDRGGDF-KGEFQSLQEELGIKRKTAPPYTPQYNGVVERVLGLLRN 321
            D++G     SLGG    ++  DD+T++  ++FLKHKSDAA+   + +AE+     PS + +  VR+D GG+F +GEF  +  +  IK++  P ++P+YNGV ER LGL+++
Sbjct:  587 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKD 695          
BLAST of mRNA_F-serratus_M_contig7150.18367.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.320e-17
Identity = 44/111 (39.64%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 DITGPFHATSLGGNRNAMLHVDDFTQFKVIHFLKHKSDAAKELHKLVAEHIG---PSGIKIGTVRTDRGGDF-KGEFQSLQEELGIKRKTAPPYTPQYNGVVERVLGLLRN 321
            D++G     SLGG    ++  DD+T++  ++FLKHKSDAA+   + +AE+     PS + +  VR+D GG+F +GEF  +  +  IK++  P ++P+YNGV ER LGL+++
Sbjct:  730 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKD 838          
BLAST of mRNA_F-serratus_M_contig7150.18367.1 vs. uniprot
Match: A0A5N6P097_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P097_9ASTR)

HSP 1 Score: 85.5 bits (210), Expect = 4.150e-17
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    1 DITGPFHATSLGGNRNAMLHVDDFTQFKVIHFLKHKSDAAKELHKLVAEHIGPSGIKIGTVRTDRGGDFKG-EFQSLQEELGIKRKTAPPYTPQYNGVVERVLGLLRNNTVI 333
            D+ GP   + +GGN+   L VDD++++  ++ LK K +A     K  A     +  K+GT+RTDRGG+F   EF    E+ GIKR+   PYTPQ NGVVER     RN T++
Sbjct:  221 DLCGPITPSIMGGNKFFFLLVDDYSRYMWVYLLKSKDEAFLNFKKFKATVEKENEHKVGTLRTDRGGEFGSKEFFQFCEDHGIKRQLTAPYTPQQNGVVER-----RNRTIM 327          
BLAST of mRNA_F-serratus_M_contig7150.18367.1 vs. uniprot
Match: A0A6H5KUV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.540e-16
Identity = 44/111 (39.64%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 DITGPFHATSLGGNRNAMLHVDDFTQFKVIHFLKHKSDAAKELHKLVAEHIG---PSGIKIGTVRTDRGGDF-KGEFQSLQEELGIKRKTAPPYTPQYNGVVERVLGLLRN 321
            D++G   A SLGG    ++  DDFT++  ++FLKHKSDAA+   + +AE+     PS + +  VR+D GG+F  GEF  +  +  IK++ +P ++P+YNGV +R L L+++
Sbjct:  195 DLSGKTRAQSLGGKWYTLIVKDDFTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVMV--VRSDNGGEFFYGEFGRVCRKYCIKQEFSPAHSPEYNGVADRALDLIKD 303          
BLAST of mRNA_F-serratus_M_contig7150.18367.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.100e-16
Identity = 43/114 (37.72%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 DITGPFHATSLGGNRNAMLHVDDFTQFKVIHFLKHKSDAAKELHKLVAEHIG---PSGIKIGTVRTDRGGDF-KGEFQSLQEELGIKRKTAPPYTPQYNGVVERVLGLLRNNTV 330
            +++G   A SLGG    ++  DD+T++  ++FLKHKSDAA+   + + E      PS + +  VR+D GG+F +GEF  +  +  IK++  P ++P+YNGV ER LGL+++  +
Sbjct:  372 ELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAI 483          
BLAST of mRNA_F-serratus_M_contig7150.18367.1 vs. uniprot
Match: A0A6H5K2B9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.810e-16
Identity = 43/115 (37.39%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 DITGPFHATSLGGNRNAMLHVDDFTQFKVIHFLKHKSDAAKELHKLVAEHIG---PSGIKIGTVRTDRGGDF-KGEFQSLQEELGIKRKTAPPYTPQYNGVVERVLGLLRNNTVI 333
            D++G     S GG    ++  D +T++  ++FLKHKSDAA+   + +AE+     PS + +  VR+D GG+F +GEF  +  +  IK++  P ++P+YNGV ERVLGL+++  ++
Sbjct:  346 DLSGKAGVQSFGGKWYTLIVKDGYTRWSHVYFLKHKSDAAEAFERYLAENRADGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERVLGLIKDAELV 458          
BLAST of mRNA_F-serratus_M_contig7150.18367.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.380e-16
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 DITGPFHATSLGGNRNAMLHVDDFTQFKVIHFLKHKSDAAKELHKLVAEHIGPSGIK--IGTVRTDRGGDF-KGEFQSLQEELGIKRKTAPPYTPQYNGVVERVLGLL 315
            D+ G     S+GG    M+  DDFT+   ++FLKHKSDA       +A  +   G+   +  VR+D GG+F  GEF S+  EL IK++  P Y+PQYNGV ER LGL+
Sbjct:  240 DLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLI 346          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7150.18367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N6NZN2_9ASTR5.650e-1943.75Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A6H5JTI6_9PHAE3.300e-1739.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE3.310e-1739.64Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE3.310e-1739.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE3.320e-1739.64Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A5N6P097_9ASTR4.150e-1741.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KUV5_9PHAE1.540e-1639.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1N9_9PHAE2.100e-1637.72Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K2B9_9PHAE3.810e-1637.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE5.380e-1643.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7150contigF-serratus_M_contig7150:13558..13896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.0
Seed ortholog evalue5.1e-14
Seed eggNOG ortholog4530.OS08T0125300-01
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932194.117965-CDS-F-serratus_M_contig7150:13557..138961622932194.117965-CDS-F-serratus_M_contig7150:13557..13896Fucus serratus maleCDSF-serratus_M_contig7150 13558..13896 -
1690964192.9756446-CDS-F-serratus_M_contig7150:13557..138961690964192.9756446-CDS-F-serratus_M_contig7150:13557..13896Fucus serratus maleCDSF-serratus_M_contig7150 13558..13896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7150.18367.1prot_F-serratus_M_contig7150.18367.1Fucus serratus malepolypeptideF-serratus_M_contig7150 13558..13896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7150.18367.1

>prot_F-serratus_M_contig7150.18367.1 ID=prot_F-serratus_M_contig7150.18367.1|Name=mRNA_F-serratus_M_contig7150.18367.1|organism=Fucus serratus male|type=polypeptide|length=113bp
DITGPFHATSLGGNRNAMLHVDDFTQFKVIHFLKHKSDAAKELHKLVAEH
IGPSGIKIGTVRTDRGGDFKGEFQSLQEELGIKRKTAPPYTPQYNGVVER
VLGLLRNNTVILL
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mRNA from alignment at F-serratus_M_contig7150:13558..13896-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7150.18367.1 ID=mRNA_F-serratus_M_contig7150.18367.1|Name=mRNA_F-serratus_M_contig7150.18367.1|organism=Fucus serratus male|type=mRNA|length=339bp|location=Sequence derived from alignment at F-serratus_M_contig7150:13558..13896- (Fucus serratus male)
GACATCACAGGTCCCTTTCACGCGACTTCTCTAGGTGGAAATCGGAACGC AATGCTGCACGTGGACGACTTCACCCAATTTAAGGTCATTCACTTTCTCA AGCATAAAAGCGACGCCGCGAAGGAGCTTCACAAACTTGTCGCAGAACAC ATCGGCCCCTCAGGCATCAAGATCGGCACCGTCCGCACCGACCGTGGAGG AGATTTCAAAGGCGAATTCCAATCGCTTCAGGAGGAGCTGGGGATCAAGC GCAAGACGGCCCCTCCGTATACACCTCAATACAACGGCGTCGTGGAGCGG GTTCTTGGACTCCTACGAAACAATACCGTGATTCTTTTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7150:13558..13896-

>mRNA_F-serratus_M_contig7150.18367.1 ID=mRNA_F-serratus_M_contig7150.18367.1|Name=mRNA_F-serratus_M_contig7150.18367.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig7150:13558..13896- (Fucus serratus male)
GACATCACAGGTCCCTTTCACGCGACTTCTCTAGGTGGAAATCGGAACGC
AATGCTGCACGTGGACGACTTCACCCAATTTAAGGTCATTCACTTTCTCA
AGCATAAAAGCGACGCCGCGAAGGAGCTTCACAAACTTGTCGCAGAACAC
ATCGGCCCCTCAGGCATCAAGATCGGCACCGTCCGCACCGACCGTGGAGG
AGATTTCAAAGGCGAATTCCAATCGCTTCAGGAGGAGCTGGGGATCAAGC
GCAAGACGGCCCCTCCGTATACACCTCAATACAACGGCGTCGTGGAGCGG
GTTCTTGGACTCCTACGAAACAATACCGTGATTCTTTTAGACATCACAGG
TCCCTTTCACGCGACTTCTCTAGGTGGAAATCGGAACGCAATGCTGCACG
TGGACGACTTCACCCAATTTAAGGTCATTCACTTTCTCAAGCATAAAAGC
GACGCCGCGAAGGAGCTTCACAAACTTGTCGCAGAACACATCGGCCCCTC
AGGCATCAAGATCGGCACCGTCCGCACCGACCGTGGAGGAGATTTCAAAG
GCGAATTCCAATCGCTTCAGGAGGAGCTGGGGATCAAGCGCAAGACGGCC
CCTCCGTATACACCTCAATACAACGGCGTCGTGGAGCGGGTTCTTGGACT
CCTACGAAACAATACCGTGATTCTTTTA
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