mRNA_F-serratus_M_contig7142.18358.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig7142.18358.1 vs. uniprot
Match: D7FVF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVF4_ECTSI) HSP 1 Score: 226 bits (577), Expect = 2.000e-71 Identity = 120/175 (68.57%), Postives = 135/175 (77.14%), Query Frame = 2
Query: 5 ATSPACAHPSPSRNSANALRAGGARGRRLNDLAMTTVVIPSDFKLPIGISALGLAVTGLGNLTGGCVLSALGLGLAVQATRVSIEFDDEAMEVKIGDDKGKLVSSGENAFVGGESRWSYKTWTNWEVYPSEKFPILLYFKETQTTPEGQIHFFPFIMKADVLLSQIRMRVPQVAK 529
AT+ A P PSR A A R RR DL M+TVV+PSDFKLPIGI+A GLA+TGLGN+ G +S +GL LA QATRV EFDD AMEVKIG+ +L SSGENAFVGGESRW+Y TWTNWEVYPSEK PIL+YFKETQT PEGQIHFFPFIM+ DVLL ++R RVPQV K
Sbjct: 39 ATNGAFVQPIPSRCVATA-----ERRRRSGDLGMSTVVVPSDFKLPIGIAAFGLAITGLGNVGAGFPVSVVGLLLAFQATRVKFEFDDVAMEVKIGETPDELESSGENAFVGGESRWNYDTWTNWEVYPSEKLPILMYFKETQTKPEGQIHFFPFIMEPDVLLQEVRARVPQVVK 208
BLAST of mRNA_F-serratus_M_contig7142.18358.1 vs. uniprot
Match: A0A836CR12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR12_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.210e-46 Identity = 83/138 (60.14%), Postives = 99/138 (71.74%), Query Frame = 2
Query: 110 TVVIPSDFKLPIGISALGLAVTGLGNLTGGCVLSALGLG--LAVQATRVSIEFDDEAMEVKIGDDKGKLVSSGENAFVGGESRWSYKTWTNWEVYPSEKFPILLYFKETQTTPEGQIHFFPFIMKADVLLSQIRMRVP 517
TV IP DF+LP + A+G A+ GN G L LG+G L +QATRV EFD E+MEVKI KG L SGEN VGG++RW+Y TWTNWEVYPSE P+L+YFKETQT+P+GQIHFFPFIM LL ++R RVP
Sbjct: 60 TVAIPPDFRLPAALVAIGGALAVSGNRAG---LPVLGIGALLGLQATRVRFEFDAESMEVKIDAGKGDLADSGENFAVGGQNRWAYDTWTNWEVYPSEALPVLMYFKETQTSPDGQIHFFPFIMNPGQLLKEVRARVP 194
BLAST of mRNA_F-serratus_M_contig7142.18358.1 vs. uniprot
Match: A0A0G4FRW9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FRW9_VITBC) HSP 1 Score: 129 bits (324), Expect = 3.750e-33 Identity = 70/144 (48.61%), Postives = 88/144 (61.11%), Query Frame = 2
Query: 110 TVVIPSDFKLPIGISALGLAVT-GLGNLTGGCVLSALGLGLAVQATRVSIEFDDEAMEVKI---GDDKGKLVSSGENAFVGGESRWSYKTWTNWEVYPSEKFPILLYFKETQTTPEGQIHFFPFIMKADVLLSQIRMRVPQVAK 529
TVV+P DF+L G A G A+ N G + +G LA+Q TRV EFD +++EVKI D L SG+N VGG +RW Y T+TNWE+YPS PIL+YFKETQT PEGQIHFFP IM L + R P++ +
Sbjct: 79 TVVVPPDFRLAAGFVAGGAALCLAANNYAAGVPIGLIGAFLALQTTRVRFEFDADSLEVKILKKDGDAETLADSGDNFAVGGANRWKYDTFTNWEMYPSPSLPILVYFKETQTIPEGQIHFFPVIMNGRKLYEIMEERCPRLPR 222
BLAST of mRNA_F-serratus_M_contig7142.18358.1 vs. uniprot
Match: A0A6P4BXH1_ARADU (uncharacterized protein LOC107470020 n=4 Tax=Arachis TaxID=3817 RepID=A0A6P4BXH1_ARADU) HSP 1 Score: 127 bits (318), Expect = 2.240e-32 Identity = 78/152 (51.32%), Postives = 93/152 (61.18%), Query Frame = 2
Query: 44 NSANALRAGGARGRRLNDLAMTTVVIPSDFKLPI---GISALGLAVTGLGNLTGGCVLSALGLGLAVQATRVSIEFDDEAMEVKIGDDKGKLVSSGENAFVGGESRWSYKTWTNWEVYPSEKFPILLYFKETQTTPEGQIHFFPFIMKADVL 490
N N L GRR+ TVV D+++PI G++ GLA T NL + LGL L VQATRV FDDEA+EV+IGD +L SGENAFVGG++RW Y T+ NWE + FPIL+YFKETQT PEGQIHFFP I L
Sbjct: 50 NHGNRLVVNSLLGRRVKTRTRETVVPEPDYRIPIVLLGVAG-GLAYTE--NLVPAVPVGLLGLLLLVQATRVRFVFDDEALEVRIGD---QLEESGENAFVGGKNRWKYSTFVNWEFW-WPNFPILVYFKETQTKPEGQIHFFPIIFNGKQL 194
BLAST of mRNA_F-serratus_M_contig7142.18358.1 vs. uniprot
Match: A0A4D8ZB66_SALSN (Uncharacterized protein n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZB66_SALSN) HSP 1 Score: 122 bits (306), Expect = 2.520e-31 Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 2
Query: 107 TTVVIPSDFKLPIGISALGLAVTGLGNLTGGCVLSALGLGLAVQATRVSIEFDDEAMEVKIGDDKGKLVSSGENAFVGGESRWSYKTWTNWEVY-PSEKFPILLYFKETQTTPEGQIHFFPFIMKADVLLSQI 502
TTV+ D+++P+ + + NL + LGL L VQATRV FD+EA+EVK+GD +L SGEN FVGG++RW Y T+ NWE++ PS FPIL+YFKETQT PEGQIHFFP I L + +
Sbjct: 12 TTVIPDPDYRIPVVVFGMAGGFVYADNLVAAVPVGLLGLLLLVQATRVRFVFDNEALEVKVGD---QLQESGENVFVGGKNRWKYSTFVNWELWWPS--FPILVYFKETQTKPEGQIHFFPVIFNGKQLYNAL 139
BLAST of mRNA_F-serratus_M_contig7142.18358.1 vs. uniprot
Match: A0A1S3C763_CUCME (uncharacterized protein LOC103497257 isoform X2 n=1 Tax=Cucumis melo TaxID=3656 RepID=A0A1S3C763_CUCME) HSP 1 Score: 122 bits (307), Expect = 3.440e-31 Identity = 72/130 (55.38%), Postives = 90/130 (69.23%), Query Frame = 2
Query: 110 TVVIPSDFKLPIGI--SALGLAVTGLGNLTGGCVLSALGLGLAVQATRVSIEFDDEAMEVKIGDDKGKLVSSGENAFVGGESRWSYKTWTNWEVY-PSEKFPILLYFKETQTTPEGQIHFFPFIMKADVL 490
TV+ D+++PI + +A GLA T NL + LGL L VQATRV F++EA+EVKIGD+ LV SGENAFVGG++RW Y T+ NWE++ PS FPIL+YFKETQT PEGQ+HFFP I L
Sbjct: 34 TVIPDPDYRIPIVLLGAAGGLAYTD--NLLAAVPIGLLGLLLLVQATRVRFVFNNEALEVKIGDE---LVDSGENAFVGGKNRWKYSTFVNWELWWPS--FPILVYFKETQTKPEGQVHFFPVIFNGKQL 156
BLAST of mRNA_F-serratus_M_contig7142.18358.1 vs. uniprot
Match: UPI000E70514D (uncharacterized protein LOC113341002 n=2 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E70514D) HSP 1 Score: 123 bits (309), Expect = 4.050e-31 Identity = 72/140 (51.43%), Postives = 90/140 (64.29%), Query Frame = 2
Query: 80 GRRLNDLAMTTVVIPS-DFKLPIGISAL--GLAVTGLGNLTGGCVLSALGLGLAVQATRVSIEFDDEAMEVKIGDDKGKLVSSGENAFVGGESRWSYKTWTNWEVYPSEKFPILLYFKETQTTPEGQIHFFPFIMKADVL 490
GR+ + VIP D++LP+ L GLA T NL G + +GL L VQ+TRV FDDEA+EVKIG+ +L SGENAFVGG++RW Y ++ NWE++ FPIL+YFKETQT PEGQIHFFP I L
Sbjct: 56 GRKKTTVVKRETVIPDPDYRLPVAFLGLAGGLAYTD--NLFGAVPVGLIGLLLLVQSTRVKFVFDDEALEVKIGE---QLEESGENAFVGGKNRWKYSSFVNWELW-WPNFPILVYFKETQTKPEGQIHFFPVIFNGKQL 189
BLAST of mRNA_F-serratus_M_contig7142.18358.1 vs. uniprot
Match: K8Z8S9_NANGC (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z8S9_NANGC) HSP 1 Score: 123 bits (309), Expect = 4.160e-31 Identity = 72/168 (42.86%), Postives = 98/168 (58.33%), Query Frame = 2
Query: 35 PSRNSANALRAGGARGRRLNDLAMTTVVIPSDFKLPIG--ISALGLAVTGLGNLTGGCVLSALGLGLAVQATRVSIEFDDEAMEVK-IGDDKGKLVSSGENAFVGGESRWSYKTWTNWEVYPSEKFPILLYFKETQTTPEGQIHFFPFIMKADVLLSQIRMRVPQVAK 529
P+R AL + G + ++ +A+ VI D+++ G + +GLA+ L N G L+ +G LA + +V FD+EAMEV +G D L EN VGG +RW+Y ++TNWE YPSE+ P+L+YFKETQT PEGQIHFFP I LL R VP K
Sbjct: 40 PARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYASFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLENFRKYVPLPGK 207
BLAST of mRNA_F-serratus_M_contig7142.18358.1 vs. uniprot
Match: A0A6J1CN08_MOMCH (uncharacterized protein LOC111012982 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CN08_MOMCH) HSP 1 Score: 123 bits (309), Expect = 4.510e-31 Identity = 73/139 (52.52%), Postives = 91/139 (65.47%), Query Frame = 2
Query: 80 GRRLNDLAMTTVVIPSDFKLPIGI--SALGLAVTGLGNLTGGCVLSALGLGLAVQATRVSIEFDDEAMEVKIGDDKGKLVSSGENAFVGGESRWSYKTWTNWEVYPSEKFPILLYFKETQTTPEGQIHFFPFIMKADVL 490
GRR+ TV+ D+++P+ + +A GLA T NL + LGL L VQATRV FDDEA+EVKIGD +L SGENAFVGG++RW Y T+ NWE++ FPIL+YFKETQT PEGQ+HFFP I L
Sbjct: 61 GRRVK--GRETVIPDPDYRIPVVLLGAAGGLAYTD--NLLSAVPVGLLGLLLLVQATRVRFVFDDEALEVKIGD---QLEDSGENAFVGGKNRWKYSTFVNWELW-WPNFPILVYFKETQTKPEGQVHFFPVIFNGKQL 191
BLAST of mRNA_F-serratus_M_contig7142.18358.1 vs. uniprot
Match: A0A1S3C602_CUCME (uncharacterized protein LOC103497257 isoform X1 n=3 Tax=Benincaseae TaxID=1003877 RepID=A0A1S3C602_CUCME) HSP 1 Score: 122 bits (307), Expect = 8.930e-31 Identity = 72/130 (55.38%), Postives = 90/130 (69.23%), Query Frame = 2
Query: 110 TVVIPSDFKLPIGI--SALGLAVTGLGNLTGGCVLSALGLGLAVQATRVSIEFDDEAMEVKIGDDKGKLVSSGENAFVGGESRWSYKTWTNWEVY-PSEKFPILLYFKETQTTPEGQIHFFPFIMKADVL 490
TV+ D+++PI + +A GLA T NL + LGL L VQATRV F++EA+EVKIGD+ LV SGENAFVGG++RW Y T+ NWE++ PS FPIL+YFKETQT PEGQ+HFFP I L
Sbjct: 69 TVIPDPDYRIPIVLLGAAGGLAYTD--NLLAAVPIGLLGLLLLVQATRVRFVFNNEALEVKIGDE---LVDSGENAFVGGKNRWKYSTFVNWELWWPS--FPILVYFKETQTKPEGQVHFFPVIFNGKQL 191 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7142.18358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig7142.18358.1 >prot_F-serratus_M_contig7142.18358.1 ID=prot_F-serratus_M_contig7142.18358.1|Name=mRNA_F-serratus_M_contig7142.18358.1|organism=Fucus serratus male|type=polypeptide|length=143bp MTTVVIPSDFKLPIGISALGLAVTGLGNLTGGCVLSALGLGLAVQATRVSback to top mRNA from alignment at F-serratus_M_contig7142:14773..17680- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig7142.18358.1 ID=mRNA_F-serratus_M_contig7142.18358.1|Name=mRNA_F-serratus_M_contig7142.18358.1|organism=Fucus serratus male|type=mRNA|length=2908bp|location=Sequence derived from alignment at F-serratus_M_contig7142:14773..17680- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig7142:14773..17680- >mRNA_F-serratus_M_contig7142.18358.1 ID=mRNA_F-serratus_M_contig7142.18358.1|Name=mRNA_F-serratus_M_contig7142.18358.1|organism=Fucus serratus male|type=CDS|length=858bp|location=Sequence derived from alignment at F-serratus_M_contig7142:14773..17680- (Fucus serratus male)back to top |