prot_F-serratus_M_contig124.1835.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig124.1835.1
Unique Nameprot_F-serratus_M_contig124.1835.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length239
Homology
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BLAST of mRNA_F-serratus_M_contig124.1835.1 vs. uniprot
Match: D7G1N7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N7_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 4.700e-63
Identity = 127/278 (45.68%), Postives = 162/278 (58.27%), Query Frame = 0 
Query:    1 MARRVEATRKRRP----QDTGASSTGSDLKHRKTVTGGELESIARLARLRVATIVRSLSVGGLRALPTSQQPAQTAYELSPASIAIPAGVAVAPSGRRIRKHVCMHPGCGRVFHLRAIAEAHQEKEHRFQRRLAAAAPFTDQFMALVWPKSGF------------------------------------LCATVESSRSLEERNIAKYEGPQVNRFECGVPGCNHRFPLEKLLNLHLRMGHNEFDMERMRSRREGAEGTLTSDGLSLTAPICVGGNAR 238
            MA+ VEA RKRRP     + G +   S  + R+TVTGGE+ES  RL + R  +  RS S G  +A+PT +Q ++TAY L  A+ A  AGV  APSGR  RKHVC+HPGCG+VFHL+A A+ HQEKEHRF+ RLAA  P TDQFM   WP  G                                        TV +  S  +  + + +     RF CGVPGC+HRFP  +LL LHLRMGHNEFD+E+M++RR+G   T T DG+++TA I VGG+ R
Sbjct: 1183 MAKMVEACRKRRPGTAESEAGGTPEQSVRRKRRTVTGGEMESAVRLLKSRGESRARSPSTGAWQAVPTVEQASKTAYGLLTAASANAAGVVQAPSGRGFRKHVCLHPGCGKVFHLKASADRHQEKEHRFRMRLAAPTPLTDQFMLPSWPSDGVPWSSGLPAPGRGKKHTSVSKGTVTACRGPAGRTPTKTAKTVGAGGSAGDTVLDRGDASLHARFACGVPGCSHRFPEARLLGLHLRMGHNEFDLEKMKARRDGTVPTQTLDGVTVTAAIDVGGHVR 1460
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BLAST of mRNA_F-serratus_M_contig124.1835.1 vs. uniprot
Match: A0A6H5JIC6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC6_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.460e-54
Identity = 119/274 (43.43%), Postives = 150/274 (54.74%), Query Frame = 0 
Query:    1 MARRVEATRKRRPQDTGASSTGSDLKHRKTVTGGELESIARLARLRVATIVRSLSVGGLRALPTSQQPAQTAYELSPASIAIPAGVAVAPSGRRIRKHVCMHPGCGRVFHLRAIAEAHQEKEHRFQRRLAAAAPFTDQFMALVWPKSGFLCA------------------------------------TVESSRSLEERNIAKYEGPQVNRFECGVPGCNHRFPLEKLLNLHLRMGHNEFDMERMRSRREGAEGTLTSDGLSLTAPICVGGNAR 238
            MA+ VEA RKRRP  T  S  G   + R     GE  +             RS S G  +A+PT++Q ++TAY L  A+ A  AGV  APSGR  RKHVC+HPGCG+VFHL+A A+ HQEKEHRF+RRLAA  P TDQFM   WP  G   A                                    TV +  S  +  + + +     RF CGVPGC+HRFP  +LL LHLRMGHNEFD+E+M++RR+G   T T DG+++TA I V  + R
Sbjct:   87 MAKMVEACRKRRP-GTAESEAGGTPEQR-----GESRA-------------RSPSTGAWQAVPTAEQASKTAYGLLTAASANAAGVIQAPSGRGFRKHVCLHPGCGKVFHLKASADRHQEKEHRFRRRLAAPTPLTDQFMLPSWPSDGVPWASGLPAPGRGTKHTSVSKGTVTVRRGPAGSTPTKTAKTVGAGGSAGDTVLDRGDASLHARFACGVPGCSHRFPQARLLGLHLRMGHNEFDLEKMKARRDGTVPTQTLDGVTVTAAIDVDSHVR 341
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig124.1835.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1N7_ECTSI4.700e-6345.68C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JIC6_9PHAE1.460e-5443.43C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 98..123
e-value: 7.5
score: 14.4
coord: 176..201
e-value: 0.25
score: 20.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 100..123
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 178..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig124contigF-serratus_M_contig124:713506..719829 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig124.1835.1mRNA_F-serratus_M_contig124.1835.1Fucus serratus malemRNAF-serratus_M_contig124 712591..720151 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig124.1835.1 ID=prot_F-serratus_M_contig124.1835.1|Name=mRNA_F-serratus_M_contig124.1835.1|organism=Fucus serratus male|type=polypeptide|length=239bp
MARRVEATRKRRPQDTGASSTGSDLKHRKTVTGGELESIARLARLRVATI
VRSLSVGGLRALPTSQQPAQTAYELSPASIAIPAGVAVAPSGRRIRKHVC
MHPGCGRVFHLRAIAEAHQEKEHRFQRRLAAAAPFTDQFMALVWPKSGFL
CATVESSRSLEERNIAKYEGPQVNRFECGVPGCNHRFPLEKLLNLHLRMG
HNEFDMERMRSRREGAEGTLTSDGLSLTAPICVGGNAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type