mRNA_F-serratus_M_contig714.18356.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig714.18356.1
Unique NamemRNA_F-serratus_M_contig714.18356.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig714.18356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig714contigF-serratus_M_contig714:289602..289995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size220
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932191.150663-CDS-F-serratus_M_contig714:289602..2896871622932191.150663-CDS-F-serratus_M_contig714:289602..289687Fucus serratus maleCDSF-serratus_M_contig714 289603..289687 -
1690964191.858819-CDS-F-serratus_M_contig714:289602..2896871690964191.858819-CDS-F-serratus_M_contig714:289602..289687Fucus serratus maleCDSF-serratus_M_contig714 289603..289687 -
1622932191.1645615-CDS-F-serratus_M_contig714:289861..2899951622932191.1645615-CDS-F-serratus_M_contig714:289861..289995Fucus serratus maleCDSF-serratus_M_contig714 289862..289995 -
1690964191.8706768-CDS-F-serratus_M_contig714:289861..2899951690964191.8706768-CDS-F-serratus_M_contig714:289861..289995Fucus serratus maleCDSF-serratus_M_contig714 289862..289995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig714.18356.1prot_F-serratus_M_contig714.18356.1Fucus serratus malepolypeptideF-serratus_M_contig714 289603..289995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig714.18356.1

>prot_F-serratus_M_contig714.18356.1 ID=prot_F-serratus_M_contig714.18356.1|Name=mRNA_F-serratus_M_contig714.18356.1|organism=Fucus serratus male|type=polypeptide|length=73bp
RAKWPEGDAHQKIAQLTQTLPPHRLPTAPMGWGKKRGKNYRPMKGIMAKE
FLGKHREFSSWKTDPAPYTIFED
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mRNA from alignment at F-serratus_M_contig714:289602..289995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig714.18356.1 ID=mRNA_F-serratus_M_contig714.18356.1|Name=mRNA_F-serratus_M_contig714.18356.1|organism=Fucus serratus male|type=mRNA|length=394bp|location=Sequence derived from alignment at F-serratus_M_contig714:289602..289995- (Fucus serratus male)
AGGGCAAAATGGCCAGAAGGGGATGCACATCAAAAAATCGCGCAGCTGAC
CCAGACGCTGCCGCCTCACAGACTGCCGACCGCGCCGATGGGGTGGGGAA
AAAAGCGCGGCAAGAACTACCGTCCCATGAAAGGGTAAGCAGGGAAGATG
TATTATACGAAGTAATATTTTGCCGGCGCCGGGTTAATGTACAAACAGGA
GGATATATGTTACTCACTCCGGGCGCGATTTCTCCTGATAGAACTCGCCT
TTCGTCTCCTACGATAGCTCAACATCATATCCTTCTTTCTTCCTTCTTTC
CTCACCAGAATCATGGCTAAGGAGTTCCTGGGAAAACACAGGGAGTTTTC
CAGTTGGAAGACGGACCCGGCCCCGTACACCATCTTCGAGGACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig714:289602..289995-

>mRNA_F-serratus_M_contig714.18356.1 ID=mRNA_F-serratus_M_contig714.18356.1|Name=mRNA_F-serratus_M_contig714.18356.1|organism=Fucus serratus male|type=CDS|length=438bp|location=Sequence derived from alignment at F-serratus_M_contig714:289602..289995- (Fucus serratus male)
AGGGCAAAATGGCCAGAAGGGGATGCACATCAAAAAATCGCGCAGCTGAC
CCAGACGCTGCCGCCTCACAGACTGCCGACCGCGCCGATGGGGTGGGGAA
AAAAGCGCGGCAAGAACTACCGTCCCATGAAAGGAGGGCAAAATGGCCAG
AAGGGGATGCACATCAAAAAATCGCGCAGCTGACCCAGACGCTGCCGCCT
CACAGACTGCCGACCGCGCCGATGGGGTGGGGAAAAAAGCGCGGCAAGAA
CTACCGTCCCATGAAAGGAATCATGGCTAAGGAGTTCCTGGGAAAACACA
GGGAGTTTTCCAGTTGGAAGACGGACCCGGCCCCGTACACCATCTTCGAG
GACAATCATGGCTAAGGAGTTCCTGGGAAAACACAGGGAGTTTTCCAGTT
GGAAGACGGACCCGGCCCCGTACACCATCTTCGAGGAC
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