mRNA_F-serratus_M_contig7137.18349.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig7137.18349.1
Unique Name	mRNA_F-serratus_M_contig7137.18349.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: D7FJM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM6_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.650e-12
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1

Query:    1 SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            S GR LVLVGDKGY  ++EM+G RDPHIAYHGSLSCMV + A+
Sbjct:  586 SGGRGLVLVGDKGYMKDEEMAGDRDPHIAYHGSLSCMVNLDAL 628

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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: A0A835YZ46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ46_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.080e-9
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1

Query:    1 SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            +RG+ +VL GDKG+    EM GQRDPHIA HGS SCMV   A+
Sbjct:  198 ARGQLVVLAGDKGHTQLSEMDGQRDPHIALHGSFSCMVNFYAL 240

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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: A0A812W741_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812W741_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 1.040e-8
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1

Query:    1 SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            S+GRC++L+GDK Y+   E+ G RDPHIA HGS S MV + AV
Sbjct:  309 SKGRCMLLLGDKAYSKLSELEGVRDPHIALHGSFSLMVNLHAV 351

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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: D7FK69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK69_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.620e-8
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1

Query:    7 GRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMV 114
            G+ LV+ GDKGY  + E+ G RDPH+A HGS SCMV
Sbjct:   77 GKALVIAGDKGYVHDSELEGTRDPHLAVHGSFSCMV 112

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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: D8LQH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH4_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.640e-8
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1

Query:    7 GRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMV 114
            G+ LV+ GDKGY  + E+ G RDPH+A HGS SCMV
Sbjct:  290 GKALVIAGDKGYVHDSELEGTRDPHLAVHGSFSCMV 325

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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: B9Q5A1_TOXGV (TPR domain-containing protein n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=B9Q5A1_TOXGV)

HSP 1 Score: 52.8 bits (125), Expect = 8.320e-7
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1

Query:    1 SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            S  R   L+GDKGY +  E +G+RDPHIA HGS+S M+ + AV
Sbjct:  367 SGNRLFCLIGDKGYPTADEFAGERDPHIAIHGSISFMLNLHAV 409

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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: F0VJQ5_NEOCL (Putative TPR domain-containing protein n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VJQ5_NEOCL)

HSP 1 Score: 51.6 bits (122), Expect = 2.130e-6
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1

Query:    1 SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            S  R   L+GDKGY +  E  G+RDPHIA HGS+S M+ + AV
Sbjct:  357 SGNRLFCLIGDKGYPTADEFVGERDPHIAIHGSISFMLNLHAV 399

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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: A0A2C6KP39_9APIC (Tpr domain-containing n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KP39_9APIC)

HSP 1 Score: 51.2 bits (121), Expect = 2.910e-6
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 1

Query:   10 RCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            +   L+GDKGY + +E SG+RDPHIA HGS+S M+ + ++
Sbjct:  471 QLFCLIGDKGYPTAEEFSGERDPHIAIHGSISFMLNLHSI 510

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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: A0A2A9MH19_9APIC (Tetratricopeptide repeat-containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MH19_9APIC)

HSP 1 Score: 51.2 bits (121), Expect = 2.920e-6
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1

Query:   10 RCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            R   L+GDKGY +  E  G+RDPHIA HGS+S M+ + AV
Sbjct:  337 RLFCLIGDKGYPTADEFVGERDPHIAIHGSISFMLNLHAV 376

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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: A0A7S3K0C6_9STRA (Type II protein arginine methyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0C6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.400e-5
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 1

Query:    1 SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            S+GR LVL GDKG  + ++  G  DPHIA HGS S MV   A+
Sbjct:  264 SKGRALVLSGDKGNNNPEQFRGLMDPHIAVHGSFSVMVNYHAI 306

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10


Match Name	E-value	Identity	Description
D7FJM6_ECTSI	1.650e-12	72.09	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YZ46_9STRA	4.080e-9	60.47	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A812W741_9DINO	1.040e-8	58.14	Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ...	[more]
D7FK69_ECTSI	1.620e-8	61.11	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LQH4_ECTSI	3.640e-8	61.11	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
B9Q5A1_TOXGV	8.320e-7	53.49	TPR domain-containing protein n=15 Tax=Toxoplasma ...	[more]
F0VJQ5_NEOCL	2.130e-6	53.49	Putative TPR domain-containing protein n=1 Tax=Neo...	[more]
A0A2C6KP39_9APIC	2.910e-6	50.00	Tpr domain-containing n=1 Tax=Cystoisospora suis T...	[more]
A0A2A9MH19_9APIC	2.920e-6	55.00	Tetratricopeptide repeat-containing protein n=1 Ta...	[more]
A0A7S3K0C6_9STRA	1.400e-5	53.49	Type II protein arginine methyltransferase n=1 Tax...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig7137	contig	F-serratus_M_contig7137:22114..22242 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	68.6
Seed ortholog evalue	8.4e-10
Seed eggNOG ortholog	2880.D7FJM6
Hectar predicted targeting category	no signal peptide or anchor
EggNOG OGs	28JR9@1,2QS4P@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	129
Cds size	129
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932191.099223-CDS-F-serratus_M_contig7137:22113..22242	1622932191.099223-CDS-F-serratus_M_contig7137:22113..22242	Fucus serratus male	CDS	F-serratus_M_contig7137 22114..22242 +
1690964191.8446748-CDS-F-serratus_M_contig7137:22113..22242	1690964191.8446748-CDS-F-serratus_M_contig7137:22113..22242	Fucus serratus male	CDS	F-serratus_M_contig7137 22114..22242 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig7137.18349.1	prot_F-serratus_M_contig7137.18349.1	Fucus serratus male	polypeptide	F-serratus_M_contig7137 22114..22242 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig7137:22114..22242+
coding sequence from alignment at F-serratus_M_contig7137:22114..22242+

protein sequence of mRNA_F-serratus_M_contig7137.18349.1

>prot_F-serratus_M_contig7137.18349.1 ID=prot_F-serratus_M_contig7137.18349.1|Name=mRNA_F-serratus_M_contig7137.18349.1|organism=Fucus serratus male|type=polypeptide|length=43bp
SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV

mRNA from alignment at F-serratus_M_contig7137:22114..22242+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig7137.18349.1 ID=mRNA_F-serratus_M_contig7137.18349.1|Name=mRNA_F-serratus_M_contig7137.18349.1|organism=Fucus serratus male|type=mRNA|length=129bp|location=Sequence derived from alignment at F-serratus_M_contig7137:22114..22242+ (Fucus serratus male)
AGCCGCGGGCGCTGCCTGGTGCTGGTGGGCGACAAAGGTTACGCCAGCGA
GCAAGAGATGAGCGGGCAGAGAGATCCGCACATCGCCTACCACGGCTCTC
TGTCGTGCATGGTGAGAGTGTGCGCTGTT

Coding sequence (CDS) from alignment at F-serratus_M_contig7137:22114..22242+

>mRNA_F-serratus_M_contig7137.18349.1 ID=mRNA_F-serratus_M_contig7137.18349.1|Name=mRNA_F-serratus_M_contig7137.18349.1|organism=Fucus serratus male|type=CDS|length=258bp|location=Sequence derived from alignment at F-serratus_M_contig7137:22114..22242+ (Fucus serratus male)
AGCCGCGGGCGCTGCCTGGTGCTGGTGGGCGACAAAGGTTACGCCAGCGA
GCAAGAGATGAGCGGGCAGAGAGATCCGCACATCGCCTACCACGGCTCTC
TGTCGTGCATGGTGAGAGTGTGCGCTGTTAGCCGCGGGCGCTGCCTGGTG
CTGGTGGGCGACAAAGGTTACGCCAGCGAGCAAGAGATGAGCGGGCAGAG
AGATCCGCACATCGCCTACCACGGCTCTCTGTCGTGCATGGTGAGAGTGT
GCGCTGTT