mRNA_F-serratus_M_contig712.18335.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig712.18335.1 vs. uniprot
Match: A0A6H5K966_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K966_9PHAE) HSP 1 Score: 126 bits (317), Expect = 4.770e-28 Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 1
Query: 73 GGV-ILILQLMVVAVVQKCGRESRSKGRDPPTNLGFYLHEFLGFFGDTFNYGTTGITLLGEGGGFLFNKRETEWFTPKKSRFLCLQSPIDPSVDVGANSFKI 375
GG+ +LQLMVVA+VQKCGRE+R KGRDPPTNLGF L EF F+G+ NY GITLLGEGGG +NKR+T WF L +Q+P + +VD G+NS+K+
Sbjct: 346 GGIGSFLLQLMVVALVQKCGREARDKGRDPPTNLGFLLEEFFDFYGNQLNYAAVGITLLGEGGGGFYNKRDTGWFNESHPFRLSMQNPHETNVDTGSNSYKV 447
BLAST of mRNA_F-serratus_M_contig712.18335.1 vs. uniprot
Match: I2CPC2_NANGC (DNA polymerase sigma subunit (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPC2_NANGC) HSP 1 Score: 75.5 bits (184), Expect = 3.900e-11 Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 1
Query: 88 ILQLMVVAVVQKCGRESRSKGRDPPT-NLGFYLHEFLGFFGDTFNYGTTGITLLGEGGGFLFNKRETEWFTPKKSRFLCLQSPIDPSVDVGANSFKIGAEKANMA 399
+LQLMV+A +Q +E+ R T NLG FL F+G FNY GI++LGE G LF K E + + L +++P+DPSVDVG NS+ + K +A
Sbjct: 234 LLQLMVIAYLQHAQKEADKASRSERTRNLGSLFLGFLRFYGHQFNYEEVGISVLGE--GILFRKMERGMYQHDRPDILAMENPLDPSVDVGKNSYNLPVLKVALA 336
BLAST of mRNA_F-serratus_M_contig712.18335.1 vs. uniprot
Match: A0A7S0GSK9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GSK9_9EUKA) HSP 1 Score: 61.6 bits (148), Expect = 1.420e-6 Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = 1
Query: 64 FTAGGVILILQLMVVAVVQKCGRESRSKGRDP-----------PTNLGFYLHEFLGFFGDT-FNYGTTGITLLGEGGGFLFNKRETEWFTPKKSRFLCLQSPIDPSVDVGANSFKIG 378
+T G +LQ+MVV ++ R K RD NL L +F FFG T FNY G+ + G GG ++KR+ F + L L+SP+DPS+D+GANSF +G
Sbjct: 324 YTGGVGSFVLQMMVVGYLKL-----RYKTRDAIRYKEWPEKASEMNLAAILMDFFKFFGGTEFNYEKVGLIVTGNGG--YYDKRKKGRFNGSRPWALSLESPLDPSLDIGANSFMMG 433
BLAST of mRNA_F-serratus_M_contig712.18335.1 vs. uniprot
Match: A0A813BAR4_9DINO (Cid14 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BAR4_9DINO) HSP 1 Score: 58.9 bits (141), Expect = 9.570e-6 Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 1
Query: 64 FTAGGVILILQLMVVAVVQKCGRESRSKGRDPPTNLGFYLHEFLGFFGDTFNYGTTGITLLGEGGGFLFNKRETEWFTPKKS--RFLCLQSPIDPSVDVGANSFKIGAEKA 390
F G +L +V++ +Q + ++S T LG L +F ++G F Y TGI++ GG LF++ + W +S LCL+SP +PS+D+G FKIG +A
Sbjct: 123 FMGGMGSYVLVCVVLSFLQH-HKSAQSSHLHSVTTLGNLLLDFFRYYGQEFRYAATGISV--HEGGSLFDRAKRGWTATTRSGQATLCLESPTEPSLDIGGRIFKIGLVRA 230
BLAST of mRNA_F-serratus_M_contig712.18335.1 vs. uniprot
Match: A0A812NC20_9DINO (Cid14 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812NC20_9DINO) HSP 1 Score: 58.9 bits (141), Expect = 1.010e-5 Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 64 FTAGGVILILQLMVVAVVQKCGRESRSKGRDPPTNLGFYLHEFLGFFGDTFNYGTTGITLLGEGGGFLFNKRETEWFTPKKS--RFLCLQSPIDPSVDVGANSFKIGAEKA 390
F G +L +V++ +Q + ++S T+LG L +F ++G F Y TGI++ GG LF++ + W +S LCL+SP +PS+D+G FKIG +A
Sbjct: 157 FMGGMGSYVLVCVVLSFLQH-HKSAQSAHLHSVTSLGNLLLDFFRYYGQEFRYAATGISV--REGGSLFDRAKRGWSATTRSGQATLCLESPTEPSLDIGGRIFKIGLVRA 264
BLAST of mRNA_F-serratus_M_contig712.18335.1 vs. uniprot
Match: A0A812VMM7_9DINO (Cid14 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812VMM7_9DINO) HSP 1 Score: 58.9 bits (141), Expect = 1.170e-5 Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 1
Query: 64 FTAGGVILILQLMVVAVVQKCGRESRSKGRDPPTNLGFYLHEFLGFFGDTFNYGTTGITLLGEGGGFLFNKRETEWFTPKKS--RFLCLQSPIDPSVDVGANSFKIGAEKA 390
F G +L +V++ +Q + ++S T LG L +F ++G F Y TGI++ GG LF++ + W +S LCL+SP +PS+D+G FKIG +A
Sbjct: 282 FMGGMGSYVLVCVVLSFLQH-HKSAQSSHLHSVTTLGNLLLDFFRYYGQEFRYAATGISV--REGGSLFDRAKRGWTATTRSGQATLCLESPTEPSLDIGGRIFKIGLVRA 389
BLAST of mRNA_F-serratus_M_contig712.18335.1 vs. uniprot
Match: A0A812VPM9_9DINO (Cid14 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812VPM9_9DINO) HSP 1 Score: 58.9 bits (141), Expect = 1.450e-5 Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 1
Query: 64 FTAGGVILILQLMVVAVVQKCGRESRSKGRDPPTNLGFYLHEFLGFFGDTFNYGTTGITLLGEGGGFLFNKRETEWFTPKKS--RFLCLQSPIDPSVDVGANSFKIGAEKA 390
F G +L +V++ +Q + ++S T LG L +F ++G F Y TGI++ GG LF++ + W +S LCL+SP +PS+D+G FKIG +A
Sbjct: 614 FMGGMGSYVLVCVVLSFLQH-HKSAQSSHLHSVTTLGNLLLDFFRYYGQEFRYAATGISV--REGGSLFDRAKRGWTATTRSGQATLCLESPTEPSLDIGGRIFKIGLVRA 721
BLAST of mRNA_F-serratus_M_contig712.18335.1 vs. uniprot
Match: A0A1Q9EF09_SYMMI (Poly(A) RNA polymerase cid14 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EF09_SYMMI) HSP 1 Score: 58.9 bits (141), Expect = 1.600e-5 Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 1
Query: 64 FTAGGVILILQLMVVAVVQKCGRESRSKGRDPPTNLGFYLHEFLGFFGDTFNYGTTGITLLGEGGGFLFNKRETEWFTPKKS--RFLCLQSPIDPSVDVGANSFKIGAEKA 390
F G +L +V++ +Q + ++S T LG L +F ++G F Y TGI++ GG LF++ + W +S LCL+SP +PS+D+G FKIG +A
Sbjct: 1460 FMGGMGSYVLVCVVLSFLQH-HKSAQSSHLHSVTTLGNLLLDFFRYYGQEFRYAATGISV--HEGGSLFDRAKRGWTATTRSGQATLCLESPTEPSLDIGGRIFKIGLVRA 1567
BLAST of mRNA_F-serratus_M_contig712.18335.1 vs. uniprot
Match: UPI00081121E9 (non-canonical poly(A) RNA polymerase PAPD5-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI00081121E9) HSP 1 Score: 57.0 bits (136), Expect = 4.290e-5 Identity = 39/108 (36.11%), Postives = 54/108 (50.00%), Query Frame = 1
Query: 58 SLFTAGGVILILQLMVVAVVQKCGRESRSKGRDPPTNLGFYLHEFLGFFGDTFNYGTTGITLLGEGGGFL----FNKRETEWFTPKKSRFLCLQSPIDPSVDVGANSF 369
+FT G L LMV++ +Q RE + R P NLG L EF FG FNY I + +GG F+ K + P FLC++ P++PS D+G NS+
Sbjct: 145 EVFTGGISSYSLILMVISFIQLHPRE---EARLPSANLGILLMEFFELFGKYFNYFRVAIRIK-DGGSFVPKSEIQKNMDSNYRPS---FLCIEDPLNPSNDIGKNSY 245
BLAST of mRNA_F-serratus_M_contig712.18335.1 vs. uniprot
Match: A0A813LFN8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LFN8_POLGL) HSP 1 Score: 56.6 bits (135), Expect = 6.440e-5 Identity = 35/111 (31.53%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 64 FTAGGVILILQLMVVAVVQKCGRESRSKGRDPPTNLGFYLHEFLGFFGDTFNYGTTGITLLGEGGGFLFNKRETEWFTPKKS--RFLCLQSPIDPSVDVGANSFKIGAEKA 390
FT G +L +V++ +Q+ +R+ + T LG L +F + F Y +GI++L GG LF++ W ++ LC++SP++P+VD+G+ FKIG +A
Sbjct: 270 FTGGMGSYVLVCVVLSFLQR-HPSARNPQKHAVTTLGNLLLDFFRHYSQDFRYARSGISVLK--GGSLFDRVARGWTATTRTGGATLCMESPLEPTVDIGSRVFKIGVIRA 377 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig712.18335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig712.18335.1 >prot_F-serratus_M_contig712.18335.1 ID=prot_F-serratus_M_contig712.18335.1|Name=mRNA_F-serratus_M_contig712.18335.1|organism=Fucus serratus male|type=polypeptide|length=152bp MVVAVVQKCGRESRSKGRDPPTNLGFYLHEFLGFFGDTFNYGTTGITLLGback to top mRNA from alignment at F-serratus_M_contig712:297686..302723- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig712.18335.1 ID=mRNA_F-serratus_M_contig712.18335.1|Name=mRNA_F-serratus_M_contig712.18335.1|organism=Fucus serratus male|type=mRNA|length=5038bp|location=Sequence derived from alignment at F-serratus_M_contig712:297686..302723- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig712:297686..302723- >mRNA_F-serratus_M_contig712.18335.1 ID=mRNA_F-serratus_M_contig712.18335.1|Name=mRNA_F-serratus_M_contig712.18335.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig712:297686..302723- (Fucus serratus male)back to top |