mRNA_F-serratus_M_contig711.18328.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig711.18328.1
Unique NamemRNA_F-serratus_M_contig711.18328.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig711.18328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig711contigF-serratus_M_contig711:355815..359065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001070.1
Exons4
Model size878
Cds size858
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig711.18328.1prot_F-serratus_M_contig711.18328.1Fucus serratus malepolypeptideF-serratus_M_contig711 355815..359045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932186.2783725-CDS-F-serratus_M_contig711:355814..3560261622932186.2783725-CDS-F-serratus_M_contig711:355814..356026Fucus serratus maleCDSF-serratus_M_contig711 355815..356026 -
1690964189.4779654-CDS-F-serratus_M_contig711:355814..3560261690964189.4779654-CDS-F-serratus_M_contig711:355814..356026Fucus serratus maleCDSF-serratus_M_contig711 355815..356026 -
1622932186.3047976-CDS-F-serratus_M_contig711:356177..3565931622932186.3047976-CDS-F-serratus_M_contig711:356177..356593Fucus serratus maleCDSF-serratus_M_contig711 356178..356593 -
1690964189.4941115-CDS-F-serratus_M_contig711:356177..3565931690964189.4941115-CDS-F-serratus_M_contig711:356177..356593Fucus serratus maleCDSF-serratus_M_contig711 356178..356593 -
1622932186.4285548-CDS-F-serratus_M_contig711:357026..3571961622932186.4285548-CDS-F-serratus_M_contig711:357026..357196Fucus serratus maleCDSF-serratus_M_contig711 357027..357196 -
1690964189.503484-CDS-F-serratus_M_contig711:357026..3571961690964189.503484-CDS-F-serratus_M_contig711:357026..357196Fucus serratus maleCDSF-serratus_M_contig711 357027..357196 -
1622932186.449055-CDS-F-serratus_M_contig711:358985..3590451622932186.449055-CDS-F-serratus_M_contig711:358985..359045Fucus serratus maleCDSF-serratus_M_contig711 358986..359045 -
1690964189.5143414-CDS-F-serratus_M_contig711:358985..3590451690964189.5143414-CDS-F-serratus_M_contig711:358985..359045Fucus serratus maleCDSF-serratus_M_contig711 358986..359045 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932186.4724605-UTR-F-serratus_M_contig711:359045..3590651622932186.4724605-UTR-F-serratus_M_contig711:359045..359065Fucus serratus maleUTRF-serratus_M_contig711 359046..359065 -
1690964189.529915-UTR-F-serratus_M_contig711:359045..3590651690964189.529915-UTR-F-serratus_M_contig711:359045..359065Fucus serratus maleUTRF-serratus_M_contig711 359046..359065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig711.18328.1

>prot_F-serratus_M_contig711.18328.1 ID=prot_F-serratus_M_contig711.18328.1|Name=mRNA_F-serratus_M_contig711.18328.1|organism=Fucus serratus male|type=polypeptide|length=286bp
MSVGVVVPSKTHSVDGFENKVHKAWKSALGNFNADTEDPMSHPDEESSVE
CGHMYNRVYPEITLRNSCGWGQLRYSREAPTTELAMPRVRDRILEDRRRK
KTLSPLKSCSEPPRNSDRWEDGIARASHMAMPCITSGRVNLKGTSGFFVR
GDDSESSLAEENKASSHLNIRTSQRGGGENKTRTVNSLSPCAKHSVTKIP
RFSNLQPSVGLRLQASDAQSRLTETNEEQYMGASKSEGHLSTTCKASRLL
PKMNRSSSGLGVSRGHQRKRRHQLVLPPGCQKSVS*
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mRNA from alignment at F-serratus_M_contig711:355815..359065-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig711.18328.1 ID=mRNA_F-serratus_M_contig711.18328.1|Name=mRNA_F-serratus_M_contig711.18328.1|organism=Fucus serratus male|type=mRNA|length=3251bp|location=Sequence derived from alignment at F-serratus_M_contig711:355815..359065- (Fucus serratus male)
CACATGGACGTGCTTGCATCATGTCAGTCGGCGTTGTTGTTCCTTCTAAA
ACGCACAGTGTTGATGGCTTTGAAAACAAGGTATGTCAAGGTGTGCTTCG
TCTAAATGGCGCTCCACGATTAGATAGTGTATTCGGATACTTCTTGTAGG
CCGGTTCGTGGTCGACTGAAACAATGTTTCGTGAAGTTGTCGATACCATT
CAGAAGCATGGACCGACAGAGGTTTAGGATTGATTACAGTCTTAGACGGC
GTGCATCTGCTTCCATTCCACTGAACCCTTGAACTGTTTGGGCCAGTCTT
GCGCCAATTGGTTGCTTGCTGGTCTGACGCGTGATGCTAAAGGCGGAGAG
CTTTATGCACCGTGCAGAGTCCGATGAGTACGTCTGTATCTCGTTCATGT
AAACGTTCGAGAAGATTGCGCCGCACGTTTGCTGCGCATGTGAACGCATG
TGAAATGGTGTGTACTCGGTACATAATCTACTTTCCGGTGAGTAACGGGG
TCATACACTCTCTGGGTTATGAAGATATCGGTATCATGGTCCTCTGTGTC
CTTGTGTCAACCCTTAACCCAAATCGGTGTGTATTTACCACTACTAATAA
CTGTGCTATACTAATCATCCTGCTCGTCACAAATTTAACACGTAAATTGA
ATTACAAACACTTACCGAACACGTATTGAATGCACTGTGAGTATTCCTTG
ATTGTGTATTCCTTGATTGTGGTTTTAGTGTCCCTGCATGACGGTTAGTG
TAAGTGTACAGTACAACGGTGGGCTTCTCCCCAATATTATACTGTTGATG
CCCAATGTTACTACCATCGGGGAACCCGTTTAAATGCCACGAAGAGGTTT
TGTCTCTACAGCCCAATAATGGTCCCACCTAAACGTTTAGACATTTCTTC
CCCTGAAGGTGGATGCTCAGAAGGTTTAAATGCGTTCAGATTTTTCTTAA
ACATAGTATAAAATAAAGTCCCTATGAGCGTGTTGTAAAACGAAACTGTA
ACATTGTTGCCAATCCTATATTATTATCATAACGTTCTTGTGTACTACAC
TACAGCTCACAATGTATTGTGGTATTCGATGACACTTATTATCGTATGTT
ATTACTACTATGGTACCGTACTGTGTTGTACTGTACACTGATGATAAATT
ATGTACAACAACCTATCTACTTCGGAGTAATTATGTACATTGTTTTATTC
GTTATATTAGGCTACTTTGATCAGTGGGGAAGAATCATGGTACTACTATG
ATTCTCTACGGGATCAGTTTCTCCGTTCTACCTGTAAGGTAGGGTCATAC
CACGTATATTCATGCCCTACTGGGTCAGTCTTTGGGAAGTCTTCTACCAG
TCTTCTGGTCTACTGGAAAGTCCTTGTTAAGTCTTTTCCAGGTGTCTATC
GACACCCATTGTTTCCCCCAATGTGATGCTATTAATGCTATAAGTTCTAC
ATTATCTTCTCCCAAGACTCTTTGACCTTCCTCCTGGCGAGGGTTGCACA
TTACACACACAAGGTGTTATCAATATGTTTTTGGATGGTTTTGGTACTAC
AATGCTTTTGTTTATTAAAAACGTTCCTGCATGGCGATTAATGTAAGTGT
ACAGTATAACGGTGGGCTTCTCCCCGACATTATACTGTTGACTCAATGTT
ACTACCATCGGGAAACCCGTTTAAATGCCATGAAGAGGTTTTGTGTTTGC
AACCTATGATCCAACCTAACTAGGCATTTTGTCATTTTTCTCCCTGTGTG
GGATGCTCGTACAAGTACCACTTTTGACAGTCTTCGAGAAAATAATTTCA
TGGCACATCAAAAAGCAAATTGCAGTACAGTTACCATATTTTCCCTACCG
TGTTCGACACCACTGTCAGGTTCACAAAGCTTGGAAGTCTGCTTTGGGTA
ATTTCAATGCAGACACAGAGGATCCTATGTCACACCCGGATGAAGAAAGC
TCCGTGGAATGCGGACACATGTATAACCGCGTCTATCCAGAAATCACCTT
GCGAAACTCTTGCGGATGGGGACAACTGCGATATTCCAGGCAAGGCATGC
GAGTTCTTAGTCGCGGATGCAACCCCTTACTTTACCTGATTCACTGCGTA
GCTTTGAAATATGAAATGGCGGGTCGGCGTTTAGGCGTCCCGGCCGTTGT
CATGGAGCAACCCAGTATTGTTTAAAATTGAGACTTACTACCTAGGTGAA
GGTAGCTGTATATCTCATGTTCAGATACTTGATAGTAGACGCTTTTGTAT
GCCTAGAATACGCCACCTGACCATGCGGACCCCCCGTGTCGACACAATCT
AAAGCTAAAGCACGGACTCTACCGGAAGAAACTTGATCGTCGGCGCAGCG
CTCCTTTTTTTTCAGTCTAAGACACCCCTTGATGCACTAATAACGATGCC
GTGAATATCCATGCATACACCCGCCCAAGTATCTGCACGCTCGATCCCTG
CGGCATCCCGGTGACGCTTCAGGGAAGCTCCCACTACAGAGCTAGCGATG
CCACGAGTTCGAGACCGCATCCTTGAGGATCGACGGCGTAAAAAAACTCT
CAGTCCACTTAAGTCGTGTTCGGAACCGCCCCGAAATAGCGACCGCTGGG
AAGACGGTATTGCACGAGCGAGTCATATGGCTATGCCCTGCATAACATCT
GGTAGAGTAAATCTGAAGGGCACAAGTGGCTTTTTCGTTCGTGGTGATGA
CAGCGAGTCATCGCTTGCGGAGGAGAATAAGGCGAGCAGTCATCTAAACA
TCAGGACCAGTCAACGTGGTGGCGGTGAAAACAAGACGAGGACAGTCAAC
TCCTTGTCGCCCTGTGCTAAACACTCCGTGACAAAGATCCCCCGATTTTC
GAACCTGCAGCCGTCGGTTGGCCTCCGGCTTCAGGCAAGTAAGTCTCAAC
CTACAAAAAAACAACTTCGCAATAACCAGCCCAATGTACAAAAGGTCCGC
TGCTGCTCTCAAAATCTTATGACTGCACACGCAGCGCGTGGCCATCCGCG
CTGAAATATATGACGACGACGCGTTACTTCAAGGAACAGGCGATGCGCAG
TCGAGACTTACAGAAACGAATGAAGAGCAATATATGGGAGCATCTAAGTC
TGAGGGCCACCTCTCCACTACATGCAAGGCTTCCCGTCTCCTACCCAAAA
TGAATCGGTCGTCGAGTGGGCTAGGCGTATCCCGGGGTCACCAGAGGAAA
AGGAGGCACCAATTAGTACTACCTCCCGGTTGTCAAAAATCTGTTTCGTG
A
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Coding sequence (CDS) from alignment at F-serratus_M_contig711:355815..359065-

>mRNA_F-serratus_M_contig711.18328.1 ID=mRNA_F-serratus_M_contig711.18328.1|Name=mRNA_F-serratus_M_contig711.18328.1|organism=Fucus serratus male|type=CDS|length=1716bp|location=Sequence derived from alignment at F-serratus_M_contig711:355815..359065- (Fucus serratus male)
ATGTCAGTCGGCGTTGTTGTTCCTTCTAAAACGCACAGTGTTGATGGCTT
TGAAAACAAGATGTCAGTCGGCGTTGTTGTTCCTTCTAAAACGCACAGTG
TTGATGGCTTTGAAAACAAGGTTCACAAAGCTTGGAAGTCTGCTTTGGGT
AATTTCAATGCAGACACAGAGGATCCTATGTCACACCCGGATGAAGAAAG
CTCCGTGGAATGCGGACACATGTATAACCGCGTCTATCCAGAAATCACCT
TGCGAAACTCTTGCGGATGGGGACAACTGCGATATTCCAGGTTCACAAAG
CTTGGAAGTCTGCTTTGGGTAATTTCAATGCAGACACAGAGGATCCTATG
TCACACCCGGATGAAGAAAGCTCCGTGGAATGCGGACACATGTATAACCG
CGTCTATCCAGAAATCACCTTGCGAAACTCTTGCGGATGGGGACAACTGC
GATATTCCAGGGAAGCTCCCACTACAGAGCTAGCGATGCCACGAGTTCGA
GACCGCATCCTTGAGGATCGACGGCGTAAAAAAACTCTCAGTCCACTTAA
GTCGTGTTCGGAACCGCCCCGAAATAGCGACCGCTGGGAAGACGGTATTG
CACGAGCGAGTCATATGGCTATGCCCTGCATAACATCTGGTAGAGTAAAT
CTGAAGGGCACAAGTGGCTTTTTCGTTCGTGGTGATGACAGCGAGTCATC
GCTTGCGGAGGAGAATAAGGCGAGCAGTCATCTAAACATCAGGACCAGTC
AACGTGGTGGCGGTGAAAACAAGACGAGGACAGTCAACTCCTTGTCGCCC
TGTGCTAAACACTCCGTGACAAAGATCCCCCGATTTTCGAACCTGCAGCC
GTCGGTTGGCCTCCGGCTTCAGGCAAGGAAGCTCCCACTACAGAGCTAGC
GATGCCACGAGTTCGAGACCGCATCCTTGAGGATCGACGGCGTAAAAAAA
CTCTCAGTCCACTTAAGTCGTGTTCGGAACCGCCCCGAAATAGCGACCGC
TGGGAAGACGGTATTGCACGAGCGAGTCATATGGCTATGCCCTGCATAAC
ATCTGGTAGAGTAAATCTGAAGGGCACAAGTGGCTTTTTCGTTCGTGGTG
ATGACAGCGAGTCATCGCTTGCGGAGGAGAATAAGGCGAGCAGTCATCTA
AACATCAGGACCAGTCAACGTGGTGGCGGTGAAAACAAGACGAGGACAGT
CAACTCCTTGTCGCCCTGTGCTAAACACTCCGTGACAAAGATCCCCCGAT
TTTCGAACCTGCAGCCGTCGGTTGGCCTCCGGCTTCAGGCAAGCGATGCG
CAGTCGAGACTTACAGAAACGAATGAAGAGCAATATATGGGAGCATCTAA
GTCTGAGGGCCACCTCTCCACTACATGCAAGGCTTCCCGTCTCCTACCCA
AAATGAATCGGTCGTCGAGTGGGCTAGGCGTATCCCGGGGTCACCAGAGG
AAAAGGAGGCACCAATTAGTACTACCTCCCGGTTGTCAAAAATCTGTTTC
GTGAGCGATGCGCAGTCGAGACTTACAGAAACGAATGAAGAGCAATATAT
GGGAGCATCTAAGTCTGAGGGCCACCTCTCCACTACATGCAAGGCTTCCC
GTCTCCTACCCAAAATGAATCGGTCGTCGAGTGGGCTAGGCGTATCCCGG
GGTCACCAGAGGAAAAGGAGGCACCAATTAGTACTACCTCCCGGTTGTCA
AAAATCTGTTTCGTGA
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