mRNA_F-serratus_M_contig711.18319.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig711.18319.1
Unique NamemRNA_F-serratus_M_contig711.18319.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig711.18319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig711contigF-serratus_M_contig711:6489..9792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2532
Cds size1563
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig711.18319.1prot_F-serratus_M_contig711.18319.1Fucus serratus malepolypeptideF-serratus_M_contig711 6489..8783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932186.086475-CDS-F-serratus_M_contig711:6488..68021622932186.086475-CDS-F-serratus_M_contig711:6488..6802Fucus serratus maleCDSF-serratus_M_contig711 6489..6802 -
1690964189.391082-CDS-F-serratus_M_contig711:6488..68021690964189.391082-CDS-F-serratus_M_contig711:6488..6802Fucus serratus maleCDSF-serratus_M_contig711 6489..6802 -
1622932186.101406-CDS-F-serratus_M_contig711:7534..87831622932186.101406-CDS-F-serratus_M_contig711:7534..8783Fucus serratus maleCDSF-serratus_M_contig711 7535..8783 -
1690964189.4025488-CDS-F-serratus_M_contig711:7534..87831690964189.4025488-CDS-F-serratus_M_contig711:7534..8783Fucus serratus maleCDSF-serratus_M_contig711 7535..8783 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932186.116819-UTR-F-serratus_M_contig711:8783..90941622932186.116819-UTR-F-serratus_M_contig711:8783..9094Fucus serratus maleUTRF-serratus_M_contig711 8784..9094 -
1690964189.4137948-UTR-F-serratus_M_contig711:8783..90941690964189.4137948-UTR-F-serratus_M_contig711:8783..9094Fucus serratus maleUTRF-serratus_M_contig711 8784..9094 -
1622932186.133965-UTR-F-serratus_M_contig711:9135..97921622932186.133965-UTR-F-serratus_M_contig711:9135..9792Fucus serratus maleUTRF-serratus_M_contig711 9136..9792 -
1690964189.4251943-UTR-F-serratus_M_contig711:9135..97921690964189.4251943-UTR-F-serratus_M_contig711:9135..9792Fucus serratus maleUTRF-serratus_M_contig711 9136..9792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig711.18319.1

>prot_F-serratus_M_contig711.18319.1 ID=prot_F-serratus_M_contig711.18319.1|Name=mRNA_F-serratus_M_contig711.18319.1|organism=Fucus serratus male|type=polypeptide|length=521bp
MATNAPIMESKTASPAPPSSSATRAKIASTAASPVGPLSLRATTNPGLAR
TVHEHPSSPVASPLTTPPMHLNAFADIWATMSADTRRRMASISFADIERS
VQDVKSVSEKRATLLADEEHRARHGEKVARHDAVLATITVIETTVLTAQA
TLADCIKRLPLLRLKERKTADAVNASSQEHARYTRDFRTQPFDPDAPPPT
AHHMGPPPARHPATAEQRARTAEPSDPTTSWAEVTSYRLQRHITNTPQDD
SYMDVRLSVLRHHNYDLPLAPRNAIYHMATSIFAALERAGRSKATLRTAL
AFTLQTSTLPPNTAQEISDLCQLIKEMYEAKLSPAWFEGAITNTREARDR
NRRARIDSSASDRSAESRRPRHREDPASGRGKSKRVMTALTTDSDTDPDS
PTASDRDKRHPRQVIPPAITPNRDDKALLTDVADHFDRAPRGAALASLQT
FGLPSGTPFSSYLRSVRVVVASTVAKGGPLAPSSEMAIKLIRIRTAQQYP
MLMPTLFPGRIATQEKPYDTL
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mRNA from alignment at F-serratus_M_contig711:6489..9792-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig711.18319.1 ID=mRNA_F-serratus_M_contig711.18319.1|Name=mRNA_F-serratus_M_contig711.18319.1|organism=Fucus serratus male|type=mRNA|length=3304bp|location=Sequence derived from alignment at F-serratus_M_contig711:6489..9792- (Fucus serratus male)
TTCGAATATTGCTGTGACGGCTGCATACATCTCACGCATTGTAACCAGTA
CGATTAATCCCTCGCATTGGTACCCAAATTTTTCTCAGAAAAAAAATTGG
CGCCAACCTCTAACGTGCGCACCCCTTAGCATGCAATAACTTCGTCCACA
CGCTTGCACCCTCGAGTAGCACATGCCCATTCTCATCGACACACACACGC
ACAGCAGATACTTGCTTGCCCCATCCTTACTGCCAATTTTTTTTGGTACT
GTCCCGATATGGACAAATCCGTCCAAAATGCGTCTGCCCTGCTTGTACCT
AGTTCAGAGCACTCAGAGCAGACAGACACATCGCTTCGCGATCGTGATGC
CTCATCACGTATTGACCACCGCCCACTTGCAGAGATTCAGAAACTGAGTG
ACTCGCAGCTACCAACCCCACGTGCTCTACGTTATGCAAAGAGAAACGAT
CGTTGCGCGAAAAGCGAAAACAATTTTTTCCCTCTTCGTCCCAACTCGCC
CAAAAATTTAGAGCGTACTGCTGTATACCCCTACAGGCCCAAACACGTTT
CTAGCGACGACGAGGCTAGCGATACCTACCCCCTTCCCCCCCCAACGCAC
GAACCCCATCTAACCAGACGAGCAGTGCGTTATATACGACGCACAGCCCG
TCGCGAGGCAATTCAGAAAAATTTAGTGCCCCCGCGGCTAAACGCGAGGC
AATTCAGAAAAATTTAGTGCCCCCCGCGGCTAAACGCGTGGCAATTCAAG
AAGAAAAAAATCTCCCGCGGCTAAACCCACGAAAATTTCCTCTGACAAGA
CTGACCGTTGGGAAACGTCACCATCTTTAACACAAGAAATTCCAACTTGT
CAAGACCAATTTTTTTTTTTCACTCGAGACGCTCCCATCCTCCACCACAA
AGAGCGTACCTCTAACAACCGCTGTTGCGACCCCTCCTTCCCTCCGCTCC
CATTTTGCGCCATTTCCCCGCCACTGTCACCGCTACGAGCCACCCGCAGC
ACGAATCTCATGGCTACGAACGCCCCCATCATGGAGTCTAAGACCGCCTC
GCCGGCCCCGCCTTCTTCGTCTGCAACGAGAGCGAAAATAGCTTCAACGG
CCGCTTCCCCTGTGGGACCGCTCTCCCTACGAGCGACCACCAACCCCGGC
CTCGCCCGTACGGTCCACGAGCACCCCAGCTCCCCGGTGGCGAGCCCCCT
CACCACACCACCAATGCACCTCAACGCCTTCGCTGACATCTGGGCCACCA
TGTCTGCCGACACTCGCCGCCGGATGGCCAGCATCTCCTTCGCCGACATC
GAGCGGAGTGTCCAGGACGTGAAGTCCGTCTCGGAGAAAAGGGCCACCTT
GTTGGCTGACGAGGAGCACCGCGCGCGTCACGGCGAGAAAGTGGCCCGCC
ACGACGCCGTCCTGGCCACCATCACCGTCATCGAGACCACGGTCTTGACT
GCGCAGGCGACCCTGGCCGACTGCATTAAACGGCTCCCGCTGCTCCGGCT
CAAGGAGCGCAAAACCGCTGACGCGGTCAACGCTTCCTCACAGGAGCACG
CTCGCTACACGAGGGATTTCAGGACCCAACCCTTCGACCCGGACGCCCCA
CCGCCCACCGCGCACCACATGGGACCCCCTCCGGCGCGACACCCAGCTAC
CGCCGAACAGCGCGCCCGGACAGCGGAACCCTCGGACCCCACTACTTCAT
GGGCCGAAGTTACCTCCTACCGACTGCAACGCCACATCACGAACACCCCT
CAGGACGACTCCTACATGGACGTCCGCCTGTCGGTCCTTCGTCACCACAA
TTATGATCTCCCTCTCGCTCCCAGGAACGCCATCTATCACATGGCCACAT
CCATCTTCGCGGCCTTGGAAAGGGCTGGACGCTCAAAGGCCACACTCCGG
ACCGCTCTAGCCTTCACCCTGCAGACGTCCACACTCCCGCCCAACACCGC
TCAAGAGATCTCCGATTTGTGCCAGCTCATCAAGGAGATGTACGAGGCCA
AACTTTCGCCCGCATGGTTCGAAGGAGCCATCACCAACACTCGAGAAGCT
CGCGACAGGAACAGACGCGCCCGGATCGACTCTTCGGCAAGCGACCGCTC
TGCCGAATCGCGGCGACCACGTCATCGCGAAGATCCCGCCAGCGGCCGCG
GAAAATCCAAACGGGTGATGACCGCGCTAACCACCGACAGCGATACCGAC
CCAGACTCCCCCACCGCGTCAGATCGGGACAAACGGCATCCTAGGCAAGT
AATTCCCCGCATCTTTCATGCACCTGCCCCCCTGGGTAGCGCGCCGGCAT
TCCCCCCTCGGATCGCTCGTCCCCGAGGAATGCGGCGAAATACCCCGCCA
TGTTCCTCTCCGGATTTACGAGCGCCCCGCGAGGTGCCCATACCTCTAGT
AAATCAAACAACGGTCGGGTCCCCGCACCCTTTACTTACACCACAATCCC
TCGAGATCATTACTAATGCCACAATAGCTGCACTAAACCAGCATTTGGCA
CACATCGGCCTTCTGCCGCGGACGACCGTAACACCACCGGACGAATCCCC
CACCGTCCCCATACAGTGCGCGACTAACGAGATACTGCCGGTTCCCTCGC
AAATGCTACCCGTGCCCGCGCGCCAAAACGCTTATCTCACTAACCCGGTC
CCTGTCGATACATATCTTCCGGCCGACGCGCTAACTGACACTTGTGACAA
CCGATCGCTCGAATATCGCAGTAATTACACACCGCACTGCTTCCGCCGTG
AATTCGCCGCGAAAATACAGGCAGACTACCGCACGCTTGACGCCAGACGC
GTCCCGCCAGTACACCCGCTACAATTTTCACCCCACACGGACAGAACGGC
CGCAACACAACTGCTTATACAGTCTATGCGAGACGCCCTGTCAGGGATAT
TCGATGTCGCTGATCCATCGGGTTCGGTGACATTGAGATCCCCCACATGG
GTTCCCGGCTGGCCTACCCCACTCTTGAAACTCACCAAAGCTGCCATCAC
GCCTAACCGTGACGACAAGGCCCTCCTGACGGACGTCGCGGACCACTTCG
ACCGCGCCCCTCGCGGCGCAGCCTTAGCGTCACTCCAGACGTTTGGTTTA
CCCTCTGGAACACCATTTTCGAGTTATTTACGCTCAGTTAGAGTTGTGGT
TGCGAGTACAGTAGCCAAGGGAGGACCACTTGCGCCCTCATCGGAGATGG
CGATCAAGCTTATCAGAATTAGGACCGCGCAGCAATACCCTATGTTAATG
CCGACTTTGTTCCCGGGTAGAATCGCGACGCAAGAGAAGCCATACGACAC
GCTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig711:6489..9792-

>mRNA_F-serratus_M_contig711.18319.1 ID=mRNA_F-serratus_M_contig711.18319.1|Name=mRNA_F-serratus_M_contig711.18319.1|organism=Fucus serratus male|type=CDS|length=3126bp|location=Sequence derived from alignment at F-serratus_M_contig711:6489..9792- (Fucus serratus male)
ATGGCTACGAACGCCCCCATCATGGAGTCTAAGACCGCCTCGCCGGCCCC
GCCTTCTTCGTCTGCAACGAGAGCGAAAATAGCTTCAACGGCCGCTTCCC
CTGTGGGACCGCTCTCCCTACGAGCGACCACCAACCCCGGCCTCGCCCGT
ACGGTCCACGAGCACCCCAGCTCCCCGGTGGCGAGCCCCCTCACCACACC
ACCAATGCACCTCAACGCCTTCGCTGACATCTGGGCCACCATGTCTGCCG
ACACTCGCCGCCGGATGGCCAGCATCTCCTTCGCCGACATCGAGCGGAGT
GTCCAGGACGTGAAGTCCGTCTCGGAGAAAAGGGCCACCTTGTTGGCTGA
CGAGGAGCACCGCGCGCGTCACGGCGAGAAAGTGGCCCGCCACGACGCCG
TCCTGGCCACCATCACCGTCATCGAGACCACGGTCTTGACTGCGCAGGCG
ACCCTGGCCGACTGCATTAAACGGCTCCCGCTGCTCCGGCTCAAGGAGCG
CAAAACCGCTGACGCGGTCAACGCTTCCTCACAGGAGCACGCTCGCTACA
CGAGGGATTTCAGGACCCAACCCTTCGACCCGGACGCCCCACCGCCCACC
GCGCACCACATGGGACCCCCTCCGGCGCGACACCCAGCTACCGCCGAACA
GCGCGCCCGGACAGCGGAACCCTCGGACCCCACTACTTCATGGGCCGAAG
TTACCTCCTACCGACTGCAACGCCACATCACGAACACCCCTCAGGACGAC
TCCTACATGGACGTCCGCCTGTCGGTCCTTCGTCACCACAATTATGATCT
CCCTCTCGCTCCCAGGAACGCCATCTATCACATGGCCACATCCATCTTCG
CGGCCTTGGAAAGGGCTGGACGCTCAAAGGCCACACTCCGGACCGCTCTA
GCCTTCACCCTGCAGACGTCCACACTCCCGCCCAACACCGCTCAAGAGAT
CTCCGATTTGTGCCAGCTCATCAAGGAGATGTACGAGGCCAAACTTTCGC
CCGCATGGTTCGAAGGAGCCATCACCAACACTCGAGAAGCTCGCGACAGG
AACAGACGCGCCCGGATCGACTCTTCGGCAAGCGACCGCTCTGCCGAATC
GCGGCGACCACGTCATCGCGAAGATCCCGCCAGCGGCCGCGGAAAATCCA
AACGGGTGATGACCGCGCTAACCACCGACAGCGATACCGACCCAGACTCC
CCCACCGCGTCAGATCGGGACAAACGGCATCCTAGGCAAGTAATTCCCCA
TGGCTACGAACGCCCCCATCATGGAGTCTAAGACCGCCTCGCCGGCCCCG
CCTTCTTCGTCTGCAACGAGAGCGAAAATAGCTTCAACGGCCGCTTCCCC
TGTGGGACCGCTCTCCCTACGAGCGACCACCAACCCCGGCCTCGCCCGTA
CGGTCCACGAGCACCCCAGCTCCCCGGTGGCGAGCCCCCTCACCACACCA
CCAATGCACCTCAACGCCTTCGCTGACATCTGGGCCACCATGTCTGCCGA
CACTCGCCGCCGGATGGCCAGCATCTCCTTCGCCGACATCGAGCGGAGTG
TCCAGGACGTGAAGTCCGTCTCGGAGAAAAGGGCCACCTTGTTGGCTGAC
GAGGAGCACCGCGCGCGTCACGGCGAGAAAGTGGCCCGCCACGACGCCGT
CCTGGCCACCATCACCGTCATCGAGACCACGGTCTTGACTGCGCAGGCGA
CCCTGGCCGACTGCATTAAACGGCTCCCGCTGCTCCGGCTCAAGGAGCGC
AAAACCGCTGACGCGGTCAACGCTTCCTCACAGGAGCACGCTCGCTACAC
GAGGGATTTCAGGACCCAACCCTTCGACCCGGACGCCCCACCGCCCACCG
CGCACCACATGGGACCCCCTCCGGCGCGACACCCAGCTACCGCCGAACAG
CGCGCCCGGACAGCGGAACCCTCGGACCCCACTACTTCATGGGCCGAAGT
TACCTCCTACCGACTGCAACGCCACATCACGAACACCCCTCAGGACGACT
CCTACATGGACGTCCGCCTGTCGGTCCTTCGTCACCACAATTATGATCTC
CCTCTCGCTCCCAGGAACGCCATCTATCACATGGCCACATCCATCTTCGC
GGCCTTGGAAAGGGCTGGACGCTCAAAGGCCACACTCCGGACCGCTCTAG
CCTTCACCCTGCAGACGTCCACACTCCCGCCCAACACCGCTCAAGAGATC
TCCGATTTGTGCCAGCTCATCAAGGAGATGTACGAGGCCAAACTTTCGCC
CGCATGGTTCGAAGGAGCCATCACCAACACTCGAGAAGCTCGCGACAGGA
ACAGACGCGCCCGGATCGACTCTTCGGCAAGCGACCGCTCTGCCGAATCG
CGGCGACCACGTCATCGCGAAGATCCCGCCAGCGGCCGCGGAAAATCCAA
ACGGGTGATGACCGCGCTAACCACCGACAGCGATACCGACCCAGACTCCC
CCACCGCGTCAGATCGGGACAAACGGCATCCTAGGCAAGTAATTCCCCCT
GCCATCACGCCTAACCGTGACGACAAGGCCCTCCTGACGGACGTCGCGGA
CCACTTCGACCGCGCCCCTCGCGGCGCAGCCTTAGCGTCACTCCAGACGT
TTGGTTTACCCTCTGGAACACCATTTTCGAGTTATTTACGCTCAGTTAGA
GTTGTGGTTGCGAGTACAGTAGCCAAGGGAGGACCACTTGCGCCCTCATC
GGAGATGGCGATCAAGCTTATCAGAATTAGGACCGCGCAGCAATACCCTA
TGTTAATGCCGACTTTGTTCCCGGGTAGAATCGCGACGCAAGAGAAGCCA
TACGACACGCTTCTGCCATCACGCCTAACCGTGACGACAAGGCCCTCCTG
ACGGACGTCGCGGACCACTTCGACCGCGCCCCTCGCGGCGCAGCCTTAGC
GTCACTCCAGACGTTTGGTTTACCCTCTGGAACACCATTTTCGAGTTATT
TACGCTCAGTTAGAGTTGTGGTTGCGAGTACAGTAGCCAAGGGAGGACCA
CTTGCGCCCTCATCGGAGATGGCGATCAAGCTTATCAGAATTAGGACCGC
GCAGCAATACCCTATGTTAATGCCGACTTTGTTCCCGGGTAGAATCGCGA
CGCAAGAGAAGCCATACGACACGCTT
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