mRNA_F-serratus_M_contig710.18314.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE) HSP 1 Score: 339 bits (870), Expect = 8.740e-107 Identity = 166/303 (54.79%), Postives = 221/303 (72.94%), Query Frame = 2
Query: 440 NVCPCGVSVCFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEHSLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLP-GGIEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQLSAAKTFEDWMLSF-HNMVAPEFCAMFVNNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHL 1342
+VCP G +VC DPH+QGL GQ I+W+GVDG WY+L+KDD D+ INVR TAPLP +FPDRQ +T +A+LS+ HS+V+EV+ PYT T GC GVSPCLA+GGL I VD + VD L + V + G + VSSSNLP EC++FGG ++WARM +DM+ RR+L ++ E+W+L + H M AP +CA ++ DL+D+QS+ A+ +I TPTV VRL+ G+N++ G+ + GR LP+L+FWQMGVG++GL + + +LSGLLGETAR V D G VMEG +A GTIEDYRVSDA F L
Sbjct: 103 SVCPPGDAVCGDPHMQGLRGQRIDWSGVDGGWYSLIKDDNIDININVRLTAPLPDEFPDRQLMTSLAVLSKGHSVVIEVENPYTVVTNGCPEGVSPCLANGGLRIIVDSQQVDELLRFSRHVPVADGAMTVSSSNLPVECQQFGGDRIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIAENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHFPLL 405
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI) HSP 1 Score: 322 bits (826), Expect = 1.230e-101 Identity = 158/292 (54.11%), Postives = 213/292 (72.95%), Query Frame = 2
Query: 473 DPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEHSLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLPGG-IEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQLSAAKTFEDWMLSF-HNMVAPEFCAMFVNNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHL 1342
DPH++GL GQ I W+GVDG WY+LVKDD DL INVR TAPLP +FPDRQ +T +AI+S+ +S+V+EV+ PYT T GC GVSPCLA+GGL I VDG+ VD L + + + G + +S+SNLP ECR+FGG ++WARM +D+L DRRQL ++ E+W+L + NM A +CA ++ DL+D+Q+N A+ +I TPTV VRL+ G+N++ G+ + GR LP+L+FWQM VG++GL + + +LSGLLGETAR V G VMEG++A GT+EDYRVS A G FA L
Sbjct: 15 DPHMRGLRGQRINWSGVDGGWYSLVKDDHADLSINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVENPYTIVTGGCPEGVSPCLANGGLRIIVDGQEVDELLRFSRQMPVADGTMTMSASNLPVECRQFGGHRIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFALL 306
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE) HSP 1 Score: 323 bits (828), Expect = 4.260e-97 Identity = 165/303 (54.46%), Postives = 218/303 (71.95%), Query Frame = 2
Query: 443 VCPCGVSVCFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEHSLVVEVKEPYTAD-TQGCSNGV-SPCLADGGLSISVDGELVDFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQLSAAKTFEDWMLSFHNMVAPEFCAMFVNNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHLH 1345
+CP G +C DPH++GL GQ I+W GVDG WY+ VKD DL++NVR TAPLP DFPDRQ +TG++++S+ HSLV+EV PY+ D GC +G +PCLA+GGLS++VDGE L P LPGGIEVS+ NLP +C +FGG K+WAR + +L RR+L A ++FEDW+LSF +M A ++C +++ L+ VQS+ A+ +IVTP VVVRL+VGI H+ + D GR LP+LD WQM VG+ GLSL +E+L+G+LGETAR V D +G+ VM G +A GT EDYRVS G DFA LH
Sbjct: 394 ICPKGSHICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLRVNVRLTAPLPDDFPDRQLVTGLSVISEGHSLVLEVTNPYSTDLNDGCPDGSPTPCLANGGLSVTVDGEKNVGLIHPIRGEILPGGIEVSADNLPVQCWQFGGHKIWARHYEAILA-RRKLRA-QSFEDWVLSFTDMAAHDWCTEYISEKGLTGVQSSHAIYQIVTPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFALLH 694
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE) HSP 1 Score: 290 bits (742), Expect = 1.260e-88 Identity = 151/297 (50.84%), Postives = 208/297 (70.03%), Query Frame = 2
Query: 467 CFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEHSLVVEVKEPYTADTQG-CSNGV-SPCLADGGLSISVDGELV---DFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQLSAAKTFEDWMLSFHNMVAPEFCAMFVNNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHL 1342
C D + L GQ I+W G+DG WY+LV+D DL +NVR TAP P +FPDRQ +TG+++++ HSLV+EV +PY DT G C +G +PCLA+GGLS+ VDGE L D LPGGI+VS++NLP +C +FGG K+ AR + + + R+ ++TFE+W+LSF +M A ++C ++ + DLSDVQS QA+ +I+TP VVVR +VGI H++ G + GR +P+LD W+M VG+ GLSL +E+L+G+LGETAR V+D G VM+G +A GT EDYRVS A GTDFA L
Sbjct: 54 CTDTYAV-LLGQSIDWFGIDGGWYSLVQDPDIDLNVNVRLTAPPPEEFPDRQLVTGLSVMAGGHSLVIEVTKPYDTDTAGGCPDGAPAPCLANGGLSVIVDGEKEADDSPLLHTIRDETLPGGIQVSAANLPVQCWQFGGDKISARHYANTIMEGRRHLLSETFEEWVLSFQHMAAHDWCTEYIAHKDLSDVQSAQAIYQIITPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFALL 349
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE) HSP 1 Score: 282 bits (721), Expect = 2.920e-86 Identity = 144/291 (49.48%), Postives = 193/291 (66.32%), Query Frame = 2
Query: 473 DPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEHSLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQLSAAKTFEDWMLSF-HNMVAPEFCAMFVNNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHL 1342
DPH++GL GQ + W+G DG WY+L+KDD DL INVR TAPLP +FPDRQ +T +AI+S+ +S+V+EVK PYT DT GC VSPC A+GGL I VDG VD L S +P GG+++WARM +D+L RRQL ++ E+W+L + NM A +CA ++ DL+D+Q+N A+ +I TPTV VRL+ G+N++S G+ + GR LP+L+FWQ+ VG++GL + +LSGL GETA V D G VMEG +A G +EDYRVS A G FA L
Sbjct: 20 DPHMRGLLGQRVNWSGFDGGWYSLIKDDNADLHINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVKNPYTTDTGGCPEDVSPCHANGGLRIIVDGHEVDELL-------------RFSRQMP------GGKRIWARMYQDILEGRRQLRGGESLEEWILRYDQNMPARTWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQSNGELNWDGRVLPDLEFWQIDVGIDGLDVDKPALSGLFGETACPVYDENGKAVMEGYDAFRGAVEDYRVSSALGVHFALL 291
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5KYD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD0_9PHAE) HSP 1 Score: 242 bits (617), Expect = 9.580e-71 Identity = 138/302 (45.70%), Postives = 181/302 (59.93%), Query Frame = 2
Query: 464 VCFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEH-SLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLPGG-IEVSSSNLPQECREFGGRKVWARMQKDM--LRDRRQLSAAKTFEDWMLSFHNMVAPEFCAMFVNN---GDLSDVQSNQALLRIVTPTVVVRLSVGINHR-SAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHLH 1345
V D H+ GL GQ I+W G D WY L+ + + Q+N R TAP+P +FP RQ ++GV+I S E SLVVEVK P T +T+GCS+ +PCLA+G L I VDG+ L P ++ LPGG + VSS+NLP ECR FGG ++WA M RR L F DW+L M AP +CA+F LS VQSN+A+LR+ T V VR+ VG+N++ S +D +PELDFWQ + E L E L G+LG+TAR V+D +G + G EAL G +E RVS G DF +H
Sbjct: 7 VSGDSHMVGLLGQEIDWYGEDSGWYCLLVNSE--FQVNARVTAPMPDEFPTRQLVSGVSIRSAEGPSLVVEVKNPITTETEGCSSTSAPCLAEGALRILVDGDESHALQSPVENLVLPGGDLVVSSANLPAECRPFGGDRIWAAQFAAMNDASGRRSLRGHTPFADWVLEADTMAAPGWCALFAREQRLSGLSSVQSNRAILRVETGGVTVRVDVGVNYQDSVLSSDGNAVLVPELDFWQTDIAFEELRPSGE-LGGMLGDTARYVIDDDGKPITSGMEALRGPVETCRVSGPLGVDFEQMH 305
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE) HSP 1 Score: 169 bits (428), Expect = 2.230e-42 Identity = 107/310 (34.52%), Postives = 164/310 (52.90%), Query Frame = 2
Query: 467 CFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQE-----HSLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQLS---AAKTFEDWMLSFHNMVAPEFCAMFV------NNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGK--TDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHLHN 1348
C DPH+ G GQ ++ G DG WYA+V D DL++N+R T+P+P + P+ +ITG+ I +++ HSLV+ V +P++ D+ C S CLADG L++ +DG++ G + L G+ +S+ NLP CR FG K W R + + + R+L+ + DW+L C +V L + S +IVTP +RLS G H+ A + TDRF D+P+ WQM + + + L ++ +G+LGET + +DA GN +MEG A+ G+ EDY V F N
Sbjct: 138 CGDPHMTGFLGQKFDFVGQDGEWYAVVSD-MPDLEVNMRVTSPVPAE-PEITYITGLGIKTRDIEGLDHSLVITVTDPHSLDS-ACPVQGSTCLADGALTVELDGDVALLSPG---EAELGPGVAISAVNLPGACRSFGFEKYWERKKAEYVASGRRLNNDLQMQEMSDWILGDPTATNMAECTEYVLGATVDGQAGLFEYDSEHTSFQIVTPKGTIRLSHGRLHQLAMRDPTDRF--DIPDHLTWQMNLAFDNVDLAVDA-TGILGETQQHTLDANGNPIMEGMAAIRGSQEDYLVDGPLDNVFVAARN 438
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE) HSP 1 Score: 160 bits (406), Expect = 8.570e-40 Identity = 107/302 (35.43%), Postives = 164/302 (54.30%), Query Frame = 2
Query: 449 PCGVSVCFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQE-----HSLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARMQKDMLR--DRRQLSAAKTFEDWMLSFHNMVAPEFCAMFV-------NNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVS 1312
P + C DPH+ G GQ ++TG DG WY L+ D + +N+R TAP+P+ PD +ITG+++++Q+ HS+V+ VK+P++ ++ C GV+PCLA+G LS+S+DG+ + L+ P V + ++VS NLP CR FG K W R + + + RR S + DW+L C +V +G L +S A +IV P VRLS G H+ A ++G LP+ WQM + ++ S V G+LGET DA+G VM G E++ GT E+ ++
Sbjct: 49 PTDPTACGDPHMTGFHGQKFDFTGDDGEWYCLISD-LPSMNLNMRVTAPVPSR-PDITYITGISLITQDGNGLDHSVVITVKDPHSLESS-CPAGVTPCLANGALSVSLDGK--EALSAP-GVVEMAPNMKVSVVNLPGACRSFGFEKYWERKKLEYAQAGGRRLSSKDQDMGDWILGDPTATNMAECTEYVARHVVEGGDGGLFAHKSEHASFQIVMPIATVRLSHGRLHQIA----QYG--LPDHSTWQMNLAIDSDS-VGVGAQGVLGETLVPTRDADGEYVMHGMESIRGTQEECELA 337
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: D7G544_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G544_ECTSI) HSP 1 Score: 162 bits (411), Expect = 2.900e-39 Identity = 96/254 (37.80%), Postives = 149/254 (58.66%), Query Frame = 2
Query: 452 CGVSVCFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQE-HSLVVEVKEPY----TADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARM--QKDMLRDRRQLSAAKTFEDWMLSFHNMVAPEFCAMFVN--NGD---LSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVE 1177
C + DPHL GL GQH +W G DG WYA + D LQ+N+R T+ LP FP+RQ +TGVA++++ H++ ++ +P T + G +PCL +GGL I+VDG + L G + G I +++ NLP EC+ FG +W + ++ + R L +A+T DW+++ M+AP +C ++ NGD L+ ++S+ A+LRI TP + +R++VGIN +T + GR +P FWQM V VE
Sbjct: 238 CTPRIWDDPHLTGLRGQHFDWYGQDGGWYAFLST-PDQLQMNLRVTSHLPATFPERQLVTGVALVTEGGHTITADIVDPLDLAPTCHGTVDAVGSAPCLVNGGLRITVDGR--EQLQG-AGEYDFDGDIHITAVNLPLECQRFGDYMMWGDLDVEQRLRGGSRSLRSAETVFDWLVADSVMIAPAWCVKYLKELNGDVTALASMKSSHAVLRIGTPNLSLRVNVGINTERE-QTLQDGRVVPTASFWQMDVRVE 486
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: D7G4E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E8_ECTSI) HSP 1 Score: 143 bits (361), Expect = 1.870e-36 Identity = 62/107 (57.94%), Postives = 84/107 (78.50%), Query Frame = 2
Query: 455 GVSVCFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEHSLVVEVKEPYTADTQG-CSNGVS-PCLADGGLSISVDGE 769
G +C DPH++GL GQHI+W GVDG WYA +KDD DL +NVR TAPLP +FP+RQ +TG+++++ EHSL++EV PY D G C +G+S PCLA+GGLS++V+GE
Sbjct: 4 GTDICDDPHMKGLRGQHIDWFGVDGGWYAFIKDDDIDLHVNVRLTAPLPEEFPERQLVTGLSVIAGEHSLILEVTNPYDTDINGGCLDGMSTPCLANGGLSVTVNGE 110 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig710.18314.1 >prot_F-serratus_M_contig710.18314.1 ID=prot_F-serratus_M_contig710.18314.1|Name=mRNA_F-serratus_M_contig710.18314.1|organism=Fucus serratus male|type=polypeptide|length=442bp MRGANYLLLFLGAINGFGQAYVINSNEVADIQLGMLGAGSDGMVDAEGLSback to top mRNA from alignment at F-serratus_M_contig710:136027..139471+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig710.18314.1 ID=mRNA_F-serratus_M_contig710.18314.1|Name=mRNA_F-serratus_M_contig710.18314.1|organism=Fucus serratus male|type=mRNA|length=3445bp|location=Sequence derived from alignment at F-serratus_M_contig710:136027..139471+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig710:136027..139471+ >mRNA_F-serratus_M_contig710.18314.1 ID=mRNA_F-serratus_M_contig710.18314.1|Name=mRNA_F-serratus_M_contig710.18314.1|organism=Fucus serratus male|type=CDS|length=2652bp|location=Sequence derived from alignment at F-serratus_M_contig710:136027..139471+ (Fucus serratus male)back to top |