mRNA_F-serratus_M_contig71.18311.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig71.18311.1
Unique NamemRNA_F-serratus_M_contig71.18311.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig71.18311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig71contigF-serratus_M_contig71:851913..857260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1195
Cds size1194
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig71.18311.1prot_F-serratus_M_contig71.18311.1Fucus serratus malepolypeptideF-serratus_M_contig71 851913..857260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932176.5832999-CDS-F-serratus_M_contig71:851912..8524041622932176.5832999-CDS-F-serratus_M_contig71:851912..852404Fucus serratus maleCDSF-serratus_M_contig71 851913..852404 +
1690964184.527761-CDS-F-serratus_M_contig71:851912..8524041690964184.527761-CDS-F-serratus_M_contig71:851912..852404Fucus serratus maleCDSF-serratus_M_contig71 851913..852404 +
1622932176.6021419-CDS-F-serratus_M_contig71:854153..8542401622932176.6021419-CDS-F-serratus_M_contig71:854153..854240Fucus serratus maleCDSF-serratus_M_contig71 854154..854240 +
1690964184.537865-CDS-F-serratus_M_contig71:854153..8542401690964184.537865-CDS-F-serratus_M_contig71:854153..854240Fucus serratus maleCDSF-serratus_M_contig71 854154..854240 +
1622932176.6220174-CDS-F-serratus_M_contig71:854891..8553231622932176.6220174-CDS-F-serratus_M_contig71:854891..855323Fucus serratus maleCDSF-serratus_M_contig71 854892..855323 +
1690964184.5471945-CDS-F-serratus_M_contig71:854891..8553231690964184.5471945-CDS-F-serratus_M_contig71:854891..855323Fucus serratus maleCDSF-serratus_M_contig71 854892..855323 +
1622932176.6382618-CDS-F-serratus_M_contig71:857077..8572601622932176.6382618-CDS-F-serratus_M_contig71:857077..857260Fucus serratus maleCDSF-serratus_M_contig71 857078..857260 +
1690964184.55576-CDS-F-serratus_M_contig71:857077..8572601690964184.55576-CDS-F-serratus_M_contig71:857077..857260Fucus serratus maleCDSF-serratus_M_contig71 857078..857260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig71.18311.1

>prot_F-serratus_M_contig71.18311.1 ID=prot_F-serratus_M_contig71.18311.1|Name=mRNA_F-serratus_M_contig71.18311.1|organism=Fucus serratus male|type=polypeptide|length=398bp
GAGRKPASEAANGSTASVGPPLGSLGPQFRPATSSSSFGATWNTKEKKIQ
QHQQQSLTAGSRSSGVASNSTAGDGGAHKGGVFTDEGTCVVDSSFSDGNN
AASSLNNNQNQNHNLAYVAEEWIRTTSRGRATARTTRETEVLGDGGAGLE
ARRASTGMTQVQQRNPHEHHNHQHHLERLEQQYGHQQSPGNSMRQPDHRS
RQRQHWPHSMMPPTQRMPHWQKQSQQEQPLQRGDGGFGGSMSIGSGNNSS
GSDLPLSEPAAGAVSGVVHLPPPPANPSWVQGSAAATTTAGGADGGNEGG
VSESGVGCREKVEAEAEAQVLKEREAEAIAMREAMRARRRERDKARREKV
RREMAAGGTVGTLHDRRQQAEGQGGAISGLIGAGGGGGGQQLLNRPHR
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mRNA from alignment at F-serratus_M_contig71:851913..857260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig71.18311.1 ID=mRNA_F-serratus_M_contig71.18311.1|Name=mRNA_F-serratus_M_contig71.18311.1|organism=Fucus serratus male|type=mRNA|length=5348bp|location=Sequence derived from alignment at F-serratus_M_contig71:851913..857260+ (Fucus serratus male)
GGCGCGGGTCGGAAGCCTGCGTCTGAGGCGGCCAACGGGTCGACCGCGTC
GGTGGGGCCGCCATTGGGATCATTGGGACCTCAATTTCGACCTGCGACGT
CTTCGTCCTCCTTTGGTGCAACGTGGAATACGAAGGAAAAGAAAATACAG
CAACATCAGCAACAGTCGTTGACGGCCGGCAGCAGGAGTAGCGGTGTCGC
TAGCAACTCGACTGCAGGAGACGGTGGTGCGCACAAGGGAGGCGTTTTTA
CTGACGAGGGGACGTGTGTCGTCGACAGCAGCTTCAGTGATGGCAATAAT
GCCGCCAGCAGTTTGAATAATAATCAAAATCAAAATCATAATCTGGCCTA
CGTTGCGGAGGAATGGATACGGACGACCAGCAGAGGGAGAGCGACGGCGC
GGACGACGAGGGAGACAGAGGTCTTGGGAGACGGGGGTGCGGGTTTGGAG
GCTCGCCGGGCGTCTACGGGCATGACTCAGGTCCAGCAACGGGTGGGTGA
AAAGGTGTACTGGTATGGTACTGTACTGTAGTGTGATGTAGTGTAGTGTA
GTGTAGTGTTCATTGAAAGAGAGAGAAATAAACATACTCCCGAGAGCTCC
ACTTTTGCATTAGGTCATGGAAGAAAAAATTTCCATGAAGTCTCTACTTG
TATTATGTCTCTAGTAAGTCTATATTATGTCTCTATTAAGTCTCTATTAT
GTCCTTATTAAGTATCTATTATGTCTCTACTAAGTCTCTATTATGTCCCT
CTTAAGTATCTATTATGTCTCTATTAAGTATCTACTATGTATCTACTAAG
TTTCTATTATGTCCCTATTAAGTATATCTTACCAGGTATGTCTCTATTAA
GTCTCTATTATGTCCCTATTAAGTCTGTGTTATTGTAATACAATACTGCC
TTGAGGGAAGGGGGGGTGCATGGAATTTGTGACACTTGCTGCTTTGCGCG
TTGCTCTTACAACATGGGTAATGGGGGCTTTAGTATCTATTAATAGTCTC
TATTAAGATGAAGGAAAGGGTAGCTCGACTTTCATCGACTTTCATCGAGG
TCAGTTACTCTATCCTTTACTTTATTCTCTTTACTCTAACACTCTAGGCT
CTAGTAGACTATACACTCTACCCTTTTTTTTTCTTCTTTAATCTTTAATC
TCACTTATAGCCGATGGAACTCATCACCATCCTGCCTGTGGTCACAAAGG
ATCTTCCCGTCTCTCCCCGGTTCACGCCTTACGATTTTTAATCGCGATGC
AAGCTCAGCAATCTTACAACTCGTCAACCAATGGTTGAATTTTACTCACG
TTCCCACGCTTCCCGTTACGAAAGAAAGAACACAAATCCTACTTTGGTAA
GAATCGAACCCACGACTTCCGCATTAGCAGGTGTGCAGGTTACCTACTAC
ATACTCAATATACTCTTACGCTTTTAGTTGACCACGGTACGTCTTTTGAG
TTGGAATTATTTGCGGGGGAGTACATACCGTATTTTATAGCGCTCGCAGC
TGCGGCGGCACGCACTACTACAGATGAATGCACTATAGATGAATGCTGTA
GAATCAGACGCCAGAAAAAGGGTGGGAAATATCTCTAAATGTCTCCCAAT
GCGCCGTTATCCGCCGCCTCTCGATCTCGGCGCGTTAGTTGGGAATAACG
GCGTGAATAATATTTGTTTGCCTTTGGGGCTTGAGCGGTGTCTTGGGTGT
TGGGTGTCGTCAAGTATCGTCAAGTACATGTCAGGATCACTGTTGGTAAA
GTACGTGAGCGGTCATAACTACATACCAGTACTGGTAGAGGAAGAGGTAG
AGGTTTGCTTTCTGTCTTCTTTTCTGTCGCATCTTGCGTGAAAGTGAAAC
ATTTGGTGGAAAAGTGAAACGTGTTTATGTTTAATGTTGATATTGATGTT
GATGTGGAAAAGTGAAACACATGCTGATGTTGATGTGGAAAATGAAACAA
AAACATGTTGTGGAAAAGTGAAAAATAACTCGTTTTTTGTAACGACGTTC
TTGCGTGGAAATAGACTATTTTGTGAAGTATTGCATGAAAATGTTTTTCT
TGCGTGAAAATATCTCGTGCGAAGCAAAAACATAACTTGCAGTGTGATGG
CCTCTAACGTCCCGTGGCCCCCGCCTCCACCACCCTGTTGCCCGCTTTTT
TCCCCCTTTGGACCTTTGGAAACCCGTTGTTTTCCGCTTTTTTCTGTACG
GAAACTCCTGAATCCACCGCTGCGGCTGCTGGCGCGGGCAGAATCCCCAT
GAGCACCACAACCATCAGCACCATCTTGAACGGCTCGAGCAGCAGTACGG
CCACCAGCAGTCACCTGGCAACTCAATGGTAAATAGTCTACTGTACAGCA
GTATACATATGTTTAATACTCTAGAGCGGCATGAGTCCCGATAATGACGG
AACAGTGTGTACCTCGAAACACTGGAAGAGAACAATACTGTGTCCTATTA
TACACTAATATTATTTTCTTATTTGTTTTTTGCTGCTGTCGGAGAAAAGA
GATACTGTATATATATTATATACCAGTATATATTATATATATATATAATA
AAACATTACCGGTGCTGCAGCCTCCACCGGTAATGTTAATCGCTACAATC
GCTTACGCTTCTACTATTAGTATTGATTGATACGATTGATTGATACTATT
GATTAATAGTAATACCCACGAGTACAGTTGGTACATTGCCATGACACGTG
GCGCCGATGTGGATTGATTTTGGACGAGTTTCGGCGTATGCGATTTTGCT
AGGTCGTGATTCTCGACCATGGCTTAATGGCACAAAATGAGTCTTGCTTG
AGACTTGCGAGACGCCCACCGAATCTCTCCAGCAATGATCCGCCCGCCCT
TCTCACTGTCAACGTCTATATCCTATATATCCTACGCTCCATGACTAGGC
TCAATATTATTATCACTATCACTAGCTATTTTTCGAAACCTCATATTTTA
TTTGGACGGTTGAATTTCCTGCACTGCAGCGTCAGCCGGATCACCGCTCG
CGCCAACGTCAGCATTGGCCTCACAGCATGATGCCGCCGACTCAACGGAT
GCCTCACTGGCAAAAGCAGTCACAGCAGGAACAACCGCTACAGCGTGGCG
ATGGCGGTTTCGGTGGAAGCATGAGCATCGGTAGCGGCAACAATAGCAGC
GGCAGCGACCTTCCTCTGTCGGAGCCTGCCGCTGGGGCAGTGTCTGGGGT
AGTGCACCTGCCTCCACCCCCGGCCAACCCATCTTGGGTGCAGGGCTCCG
CTGCTGCCACCACCACCGCCGGTGGTGCTGATGGTGGTAATGAAGGAGGC
GTTTCTGAGAGTGGGGTGGGGTGCAGGGAAAAGGTGGAGGCGGAGGCGGA
GGCGCAGGTTTTGAAGGAAAGGGAGGCGGAAGCTATAGCTATGAGAGAAG
CCATGAGAGCGGTGGGTCGCGAGGCTATACGCCGTGATTTTTAATGTTCG
ATATGCTCGTTTTCCATCTATATACTGTACTCCAGTAAATATTTCGCTGT
TACTACTACAAGTTGCTGTACAGTACCATAAAAAAGAAAACATATGCAGT
ACCAGCATTCAGTATGACATGTTCTGTACGTGAATGTTTATCGGTTAAAT
CTGTGAATTACGGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTTTTTGTTA
TTGTTGTTGTTGTAATTGGGCATAATCGTTTGTTGTGTGTGGATTTTATT
GCCATTTGACCCTGTCGTATGAATCATTTAGTTCCCCCAATGCTGGCGAC
TGCCTGTTTATGTGCCTCTGTGTCTGTTTGCTTTCGAACACACGCCTCCA
TGTGGAAGCGTCTTGTGTTATACTTGTATGGCGTCATCATTCCATAGATA
GATCATAGATAGATAGTGCTGTGCTATGCATATATTAGTATGCTACAGTA
TGCATACATTAATATGCTACAGTATGCGTATACTAATATTAAAAGCGTCG
CGGCGCGTTCGCCTCTGGCTGTCAAGAGACCGGATTGAAAGCCGAAATTC
TACATGCCTCTCTCCCCACTCAATGTTGTTGTAATATCGAGATAATAATG
AGATAGTACTGTACTTCAGTACATATTTTTGCGATGTTCGATCCTTACCA
AAGTAGGATTTGTGTTCTTTCTTTCGTAACGGAAAGCGTGGGAACGCGAG
TAAGTAAAATTAAACCATTGGTTGACGAGTTGTAAGATTTCTGAACTTGC
ATCGCGATAAAAAGTCGTAAGGCGTGAACCGGGGAGAGATGGTAAGATTC
TTAGTGACCGCAGGCAGGCTATAAATGAGATTATAAAAATAAATAAATCG
AAAAGCGTGGTCGAAAAAGACTACTAATATTAATATTAATACATGCCATA
GAAGTATAGTATAGAGCACAACCAAAGAGTCTCGTACTTTCGAGGAGTGA
TAATAATCACGACTGAGTTATCTACATGTATACATGCATTTGTATATACT
CTATATACACTCGGAGTATAATATAGAGCCTATGTATGTATTTATTTATT
CATTTTGGTTCTGCATGATGCTCTAATGCTCTAATAATAATATACCGTAT
GGTCTTAGAAGGCACGTTTCTGCGAAAGTTGGGAGAAAATCACCTCCCCC
ACCCACCCCCAATGAAATTGTGCTGTATACTGTATACTGTATACCGACCG
ATCTAGAAGACCCCAACCACTATGCAGCAGTATTAATATTTTCTTCTGCT
GTATAGGAGTAGTGAAAACCCACCGACCGACCGACCGACCGACCGATAGC
ATCGCCTCCTCTCTTTCCTTGGATAACAATAACACTAAAACACTATTAAT
AACAATAACACTCGTTACTCTACTGTACTGTACTGTACTGTACGTGGGTG
CTTAAAAATGCTCAAAAGACCCTCTCTGAATTTCAGACTACTCTTATGCA
TAGACTACCTACTGTGCTGCATATATTATATACATTGTATACATTAGACT
TGACCCTTTGGTTGTTGATTTCGGAAATTGCTTTTACTTGTACTTGGTAT
TAATATTAAATAGTTGAATACTGTACCTTACCATGATGATGCATGTCCGT
TTCGGCCGACCCCCGACCCGTGCCACTCTACCCTACCGACGGATCGACAA
AACCTACTGACGAACGTACCGACGAATCTACCTGTACAACATACCGACGA
AACCACCGACGTCAGCGGCGACGCGAGCGGGATAAGGCTAGGAGGGAGAA
GGTTCGAAGGGAGATGGCCGCGGGGGGCACGGTGGGCACGCTGCACGACC
GGCGCCAACAGGCGGAGGGACAGGGGGGCGCCATATCCGGGTTGATCGGT
GCAGGAGGAGGAGGAGGAGGGCAGCAGCTCCTCAACCGACCTCACCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig71:851913..857260+

>mRNA_F-serratus_M_contig71.18311.1 ID=mRNA_F-serratus_M_contig71.18311.1|Name=mRNA_F-serratus_M_contig71.18311.1|organism=Fucus serratus male|type=CDS|length=2388bp|location=Sequence derived from alignment at F-serratus_M_contig71:851913..857260+ (Fucus serratus male)
GGCGCGGGTCGGAAGCCTGCGTCTGAGGCGGCCAACGGGTCGACCGCGTC
GGTGGGGCCGCCATTGGGATCATTGGGACCTCAATTTCGACCTGCGACGT
CTTCGTCCTCCTTTGGTGCAACGTGGAATACGAAGGAAAAGAAAATACAG
CAACATCAGCAACAGTCGTTGACGGCCGGCAGCAGGAGTAGCGGTGTCGC
TAGCAACTCGACTGCAGGAGACGGTGGTGCGCACAAGGGAGGCGTTTTTA
CTGACGAGGGGACGTGTGTCGTCGACAGCAGCTTCAGTGATGGCAATAAT
GCCGCCAGCAGTTTGAATAATAATCAAAATCAAAATCATAATCTGGCCTA
CGTTGCGGAGGAATGGATACGGACGACCAGCAGAGGGAGAGCGACGGCGC
GGACGACGAGGGAGACAGAGGTCTTGGGAGACGGGGGTGCGGGTTTGGAG
GCTCGCCGGGCGTCTACGGGCATGACTCAGGTCCAGCAACGGGGCGCGGG
TCGGAAGCCTGCGTCTGAGGCGGCCAACGGGTCGACCGCGTCGGTGGGGC
CGCCATTGGGATCATTGGGACCTCAATTTCGACCTGCGACGTCTTCGTCC
TCCTTTGGTGCAACGTGGAATACGAAGGAAAAGAAAATACAGCAACATCA
GCAACAGTCGTTGACGGCCGGCAGCAGGAGTAGCGGTGTCGCTAGCAACT
CGACTGCAGGAGACGGTGGTGCGCACAAGGGAGGCGTTTTTACTGACGAG
GGGACGTGTGTCGTCGACAGCAGCTTCAGTGATGGCAATAATGCCGCCAG
CAGTTTGAATAATAATCAAAATCAAAATCATAATCTGGCCTACGTTGCGG
AGGAATGGATACGGACGACCAGCAGAGGGAGAGCGACGGCGCGGACGACG
AGGGAGACAGAGGTCTTGGGAGACGGGGGTGCGGGTTTGGAGGCTCGCCG
GGCGTCTACGGGCATGACTCAGGTCCAGCAACGGAATCCCCATGAGCACC
ACAACCATCAGCACCATCTTGAACGGCTCGAGCAGCAGTACGGCCACCAG
CAGTCACCTGGCAACTCAATGAATCCCCATGAGCACCACAACCATCAGCA
CCATCTTGAACGGCTCGAGCAGCAGTACGGCCACCAGCAGTCACCTGGCA
ACTCAATGCGTCAGCCGGATCACCGCTCGCGCCAACGTCAGCATTGGCCT
CACAGCATGATGCCGCCGACTCAACGGATGCCTCACTGGCAAAAGCAGTC
ACAGCAGGAACAACCGCTACAGCGTGGCGATGGCGGTTTCGGTGGAAGCA
TGAGCATCGGTAGCGGCAACAATAGCAGCGGCAGCGACCTTCCTCTGTCG
GAGCCTGCCGCTGGGGCAGTGTCTGGGGTAGTGCACCTGCCTCCACCCCC
GGCCAACCCATCTTGGGTGCAGGGCTCCGCTGCTGCCACCACCACCGCCG
GTGGTGCTGATGGTGGTAATGAAGGAGGCGTTTCTGAGAGTGGGGTGGGG
TGCAGGGAAAAGGTGGAGGCGGAGGCGGAGGCGCAGGTTTTGAAGGAAAG
GGAGGCGGAAGCTATAGCTATGAGAGAAGCCATGAGAGCGCGTCAGCCGG
ATCACCGCTCGCGCCAACGTCAGCATTGGCCTCACAGCATGATGCCGCCG
ACTCAACGGATGCCTCACTGGCAAAAGCAGTCACAGCAGGAACAACCGCT
ACAGCGTGGCGATGGCGGTTTCGGTGGAAGCATGAGCATCGGTAGCGGCA
ACAATAGCAGCGGCAGCGACCTTCCTCTGTCGGAGCCTGCCGCTGGGGCA
GTGTCTGGGGTAGTGCACCTGCCTCCACCCCCGGCCAACCCATCTTGGGT
GCAGGGCTCCGCTGCTGCCACCACCACCGCCGGTGGTGCTGATGGTGGTA
ATGAAGGAGGCGTTTCTGAGAGTGGGGTGGGGTGCAGGGAAAAGGTGGAG
GCGGAGGCGGAGGCGCAGGTTTTGAAGGAAAGGGAGGCGGAAGCTATAGC
TATGAGAGAAGCCATGAGAGCGCGGCGACGCGAGCGGGATAAGGCTAGGA
GGGAGAAGGTTCGAAGGGAGATGGCCGCGGGGGGCACGGTGGGCACGCTG
CACGACCGGCGCCAACAGGCGGAGGGACAGGGGGGCGCCATATCCGGGTT
GATCGGTGCAGGAGGAGGAGGAGGAGGGCAGCAGCTCCTCAACCGACCTC
ACCGGCGGCGACGCGAGCGGGATAAGGCTAGGAGGGAGAAGGTTCGAAGG
GAGATGGCCGCGGGGGGCACGGTGGGCACGCTGCACGACCGGCGCCAACA
GGCGGAGGGACAGGGGGGCGCCATATCCGGGTTGATCGGTGCAGGAGGAG
GAGGAGGAGGGCAGCAGCTCCTCAACCGACCTCACCGG
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