mRNA_F-serratus_M_contig708.18281.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig708.18281.1
Unique NamemRNA_F-serratus_M_contig708.18281.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig708.18281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig708contigF-serratus_M_contig708:337218..337752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size535
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig708.18281.1prot_F-serratus_M_contig708.18281.1Fucus serratus malepolypeptideF-serratus_M_contig708 337284..337619 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932174.265631-UTR-F-serratus_M_contig708:337217..3372831622932174.265631-UTR-F-serratus_M_contig708:337217..337283Fucus serratus maleUTRF-serratus_M_contig708 337218..337283 +
1690964183.4271996-UTR-F-serratus_M_contig708:337217..3372831690964183.4271996-UTR-F-serratus_M_contig708:337217..337283Fucus serratus maleUTRF-serratus_M_contig708 337218..337283 +
1622932174.3066049-UTR-F-serratus_M_contig708:337619..3377521622932174.3066049-UTR-F-serratus_M_contig708:337619..337752Fucus serratus maleUTRF-serratus_M_contig708 337620..337752 +
1690964183.4559584-UTR-F-serratus_M_contig708:337619..3377521690964183.4559584-UTR-F-serratus_M_contig708:337619..337752Fucus serratus maleUTRF-serratus_M_contig708 337620..337752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932174.2854178-CDS-F-serratus_M_contig708:337283..3376191622932174.2854178-CDS-F-serratus_M_contig708:337283..337619Fucus serratus maleCDSF-serratus_M_contig708 337284..337619 +
1690964183.4452796-CDS-F-serratus_M_contig708:337283..3376191690964183.4452796-CDS-F-serratus_M_contig708:337283..337619Fucus serratus maleCDSF-serratus_M_contig708 337284..337619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig708.18281.1

>prot_F-serratus_M_contig708.18281.1 ID=prot_F-serratus_M_contig708.18281.1|Name=mRNA_F-serratus_M_contig708.18281.1|organism=Fucus serratus male|type=polypeptide|length=112bp
MKTRNLQGGLSTPVTCGVGCLIKRNLSYRSRVVTLIVPPGSRSRRRSVTG
AALAGALEVLARAAPAPPTVVTGVFMIIVTTVLAATSGSCAGSSILPPKL
ARCHAACRVPC*
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mRNA from alignment at F-serratus_M_contig708:337218..337752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig708.18281.1 ID=mRNA_F-serratus_M_contig708.18281.1|Name=mRNA_F-serratus_M_contig708.18281.1|organism=Fucus serratus male|type=mRNA|length=535bp|location=Sequence derived from alignment at F-serratus_M_contig708:337218..337752+ (Fucus serratus male)
GTAGGAAACGAAAGATGCGGTGGCCTTGCAAGAGGAACAGGCAGTTGTTC
CGGCGCGGTGATCGGGATGAAGACACGGAATCTGCAGGGCGGTCTTTCTA
CGCCTGTGACTTGCGGCGTCGGCTGTCTCATCAAGAGGAATTTGAGCTAT
AGATCAAGAGTAGTCACTCTTATCGTCCCACCTGGGTCCCGTAGCCGCAG
AAGATCGGTCACCGGGGCGGCGCTCGCGGGAGCCCTTGAAGTCCTTGCGA
GAGCTGCGCCTGCCCCGCCGACGGTCGTCACGGGTGTCTTCATGATTATC
GTCACCACGGTCCTTGCTGCCACGTCCGGCTCTTGTGCGGGAAGTTCCAT
CTTGCCCCCGAAATTAGCTCGGTGCCACGCCGCCTGCAGAGTTCCTTGCT
GACGCCAGCTCTCGAAGTGGGGAGGCACGTGCCGTGGCGGTTGCTTCTCT
GGACATCACCCGATGGAGCTCTTTGTGGCGATGGTCGTCCCCCGCGAGGC
TGACATGTCGTCGGTCCAGGCGCTCAAGAGCGCGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig708:337218..337752+

>mRNA_F-serratus_M_contig708.18281.1 ID=mRNA_F-serratus_M_contig708.18281.1|Name=mRNA_F-serratus_M_contig708.18281.1|organism=Fucus serratus male|type=CDS|length=672bp|location=Sequence derived from alignment at F-serratus_M_contig708:337218..337752+ (Fucus serratus male)
ATGAAGACACGGAATCTGCAGGGCGGTCTTTCTACGCCTGTGACTTGCGG
CGTCGGCTGTCTCATCAAGAGGAATTTGAGCTATAGATCAAGAGTAGTCA
CTCTTATCGTCCCACCTGGGTCCCGTAGCCGCAGAAGATCGGTCACCGGG
GCGGCGCTCGCGGGAGCCCTTGAAGTCCTTGCGAGAGCTGCGCCTGCCCC
GCCGACGGTCGTCACGGGTGTCTTCATGATTATCGTCACCACGGTCCTTG
CTGCCACGTCCGGCTCTTGTGCGGGAAGTTCCATCTTGCCCCCGAAATTA
GCTCGGTGCCACGCCGCCTGCAGAGTTCCTTGCTGAATGAAGACACGGAA
TCTGCAGGGCGGTCTTTCTACGCCTGTGACTTGCGGCGTCGGCTGTCTCA
TCAAGAGGAATTTGAGCTATAGATCAAGAGTAGTCACTCTTATCGTCCCA
CCTGGGTCCCGTAGCCGCAGAAGATCGGTCACCGGGGCGGCGCTCGCGGG
AGCCCTTGAAGTCCTTGCGAGAGCTGCGCCTGCCCCGCCGACGGTCGTCA
CGGGTGTCTTCATGATTATCGTCACCACGGTCCTTGCTGCCACGTCCGGC
TCTTGTGCGGGAAGTTCCATCTTGCCCCCGAAATTAGCTCGGTGCCACGC
CGCCTGCAGAGTTCCTTGCTGA
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