mRNA_F-serratus_M_contig706.18266.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig706.18266.1
Unique NamemRNA_F-serratus_M_contig706.18266.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig706.18266.1 vs. uniprot
Match: D8LH37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH37_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.270e-15
Identity = 46/108 (42.59%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:    4 TASHKWLYGTIMLFVFRPLLVDIKNMEKYFTHAKVSEVRARLDTTRDG-TRRALLEMVQASSALSHAIRSPSFCDREITTLDMLSKDVVYATHKVLGRPAAKQTSHAL 324
            T S KW   +IML VFRP+LV  KNM++      V+++R    T  DG     L ++VQ +S LS+A+R+PS  DRE++ LD+L++DVV    KV+GR  ++ T H++
Sbjct:   27 TGSDKWTLQSIMLLVFRPVLVMKKNMKRQ----DVNDLREMWGT--DGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVVGFYSKVMGRTGSRPTIHSI 128
[Close]
BLAST of mRNA_F-serratus_M_contig706.18266.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.420e-9
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:    1 YTASHKWLYGTIMLFVFRPLLVDIKNMEKYFT----HAKVSEVRARLDTTRDGTRRALLEMVQASSALSHAIRSPSFCDREITTLDMLSKDVVYATHKVLGRPAAKQTSH 318
            YT SHK L+G++ L VFR LL  +  M  Y +     A+  EV  RL+   +G    L + +QASSAL+ A R   F D ++  L + + D+V  +   LGR   K T H
Sbjct:  464 YTGSHKGLFGSVQLIVFRGLLASVGAMRHYLSSNALRAQNIEVWGRLND--EGVLDRLRQYLQASSALTFAARGQVFSDSDLVELHVRAGDMVENSKLTLGREGVKTTMH 571
[Close]
BLAST of mRNA_F-serratus_M_contig706.18266.1 vs. uniprot
Match: D7G6M3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M3_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.010e-6
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    4 TASHKWLYGTIMLFVFRPLLVDIKNMEKYFTHAKVSEVRARLDTTRDGTRRALLEMVQASSALSHAIRSPSFCDREITTLDMLSKDVV 267
            T S KWL  +I+L VFR +      ME Y    ++ E+     + ++  R +LL++VQA+S+LS A+R+PS+ D EI  L   ++D++
Sbjct:  212 TGSDKWLLASIVLLVFRAVFHTTATMEMYIKGRELGELVDDYGSMQEA-RDSLLQLVQAASSLSFALRAPSYNDVEIEQLHKHAQDMI 298
[Close]
BLAST of mRNA_F-serratus_M_contig706.18266.1 vs. uniprot
Match: A0A6H5JWQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.260e-6
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    7 ASHKWLYGTIMLFVFRPLLVDIKNMEKYFTHAKVSEVRARLDTTRDGTRRALL----EMVQASSALSHAIRSPSFCDREITTLDMLSKDVVYATHKVLGRPAAKQTSHA 321
             S KWL G+I+L V R +L D   +++Y    K  E++A  DT   G  +A+L    +++Q +SAL+ A+RSPSF   E   L   ++D V    ++LGR   + T H+
Sbjct:  434 GSDKWLLGSILLLVSRCVLHDATALKEY---VKPRELQALKDTW--GGEQAVLAQLRKLLQVASALTFAVRSPSFYKAERKKLMEHARDTVGVYAELLGRGGVRTTVHS 537
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig706.18266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LH37_ECTSI2.270e-1542.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K953_9PHAE3.420e-937.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6M3_ECTSI1.010e-636.36Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JWQ6_9PHAE4.260e-635.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig706contigF-serratus_M_contig706:162352..163265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig706.18266.1prot_F-serratus_M_contig706.18266.1Fucus serratus malepolypeptideF-serratus_M_contig706 162352..163264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932171.523818-CDS-F-serratus_M_contig706:162351..1624321622932171.523818-CDS-F-serratus_M_contig706:162351..162432Fucus serratus maleCDSF-serratus_M_contig706 162352..162432 +
1690964181.9634194-CDS-F-serratus_M_contig706:162351..1624321690964181.9634194-CDS-F-serratus_M_contig706:162351..162432Fucus serratus maleCDSF-serratus_M_contig706 162352..162432 +
1622932171.5353086-CDS-F-serratus_M_contig706:162857..1630401622932171.5353086-CDS-F-serratus_M_contig706:162857..163040Fucus serratus maleCDSF-serratus_M_contig706 162858..163040 +
1690964181.9737036-CDS-F-serratus_M_contig706:162857..1630401690964181.9737036-CDS-F-serratus_M_contig706:162857..163040Fucus serratus maleCDSF-serratus_M_contig706 162858..163040 +
1622932171.5483727-CDS-F-serratus_M_contig706:163204..1632641622932171.5483727-CDS-F-serratus_M_contig706:163204..163264Fucus serratus maleCDSF-serratus_M_contig706 163205..163264 +
1690964181.9830089-CDS-F-serratus_M_contig706:163204..1632641690964181.9830089-CDS-F-serratus_M_contig706:163204..163264Fucus serratus maleCDSF-serratus_M_contig706 163205..163264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig706.18266.1

>prot_F-serratus_M_contig706.18266.1 ID=prot_F-serratus_M_contig706.18266.1|Name=mRNA_F-serratus_M_contig706.18266.1|organism=Fucus serratus male|type=polypeptide|length=108bp
YTASHKWLYGTIMLFVFRPLLVDIKNMEKYFTHAKVSEVRARLDTTRDGT
RRALLEMVQASSALSHAIRSPSFCDREITTLDMLSKDVVYATHKVLGRPA
AKQTSHAL
back to top

mRNA from alignment at F-serratus_M_contig706:162352..163265+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig706.18266.1 ID=mRNA_F-serratus_M_contig706.18266.1|Name=mRNA_F-serratus_M_contig706.18266.1|organism=Fucus serratus male|type=mRNA|length=914bp|location=Sequence derived from alignment at F-serratus_M_contig706:162352..163265+ (Fucus serratus male)
TACACCGCCTCGCACAAGTGGCTGTACGGCACGATAATGTTGTTCGTTTT
TAGGCCACTGCTGGTGGACATCAAAAACATGGTGAGTAAAAAATAAGTCA
GATTATTTTCTCTATCACCGGCGGTTTTTAATAGTTCTCATAGCAAGACG
ATCGCGCTACACTTTACCAGTATATTGCCGCTACATAACCCCTTCGCCGA
TTTATATCTCTTGTTCAATTGAGAATGTATCATATATTGGCTGGCGTTGG
ACACTGGGATGCAGCCTACGATATATTTACCCATACGTTCGACCATTTTC
ACATTTCGTGGAACTAAATATGTCAAGTGAGTCTTAGACTGATTCAAAAA
CGGCCCAAAGGCATAACGACTTGTAGCATTGGGTCCTGATTAAGACGAAT
TTTCGACTACAACTACGAACGTATTTGTTATATAGCCGCCCCCCCCCGAA
GAAATAAATGAATTCGCAGTCCTTTTGCTCTGCGCTTGAAATACTGCACA
ATGCAGGAGAAGTACTTCACCCATGCCAAAGTCAGCGAGGTTCGTGCTAG
ATTGGACACAACCAGAGACGGTACCAGGCGGGCGCTCTTGGAAATGGTGC
AGGCTTCTTCCGCGCTGTCTCACGCTATCCGGTCTCCGTCATTCTGCGAC
AGAGAAATAACGACGTTGGATATGTTATCTAAAGACGTGGTGAGCTGCAT
TTGGGTAAGAGTTATCTAGAGTTTTGCTCTTGTAAGTTTACGATATATAT
GCATTACTATAAAACTGATTGCGTCGGACGGCCCCCGTTCTTGACATAGC
ACGGCATCAGTTTGCGTACCCCGTGAAATCTTGAACTCGGCACCACCGAT
AAGGTTTACGCAACTCACAAGGTACTGGGGAGACCGGCGGCGAAGCAGAC
GTCGCATGCCTTAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig706:162352..163265+

>mRNA_F-serratus_M_contig706.18266.1 ID=mRNA_F-serratus_M_contig706.18266.1|Name=mRNA_F-serratus_M_contig706.18266.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig706:162352..163265+ (Fucus serratus male)
TACACCGCCTCGCACAAGTGGCTGTACGGCACGATAATGTTGTTCGTTTT
TAGGCCACTGCTGGTGGACATCAAAAACATGTACACCGCCTCGCACAAGT
GGCTGTACGGCACGATAATGTTGTTCGTTTTTAGGCCACTGCTGGTGGAC
ATCAAAAACATGGAGAAGTACTTCACCCATGCCAAAGTCAGCGAGGTTCG
TGCTAGATTGGACACAACCAGAGACGGTACCAGGCGGGCGCTCTTGGAAA
TGGTGCAGGCTTCTTCCGCGCTGTCTCACGCTATCCGGTCTCCGTCATTC
TGCGACAGAGAAATAACGACGTTGGATATGTTATCTAAAGACGTGGAGAA
GTACTTCACCCATGCCAAAGTCAGCGAGGTTCGTGCTAGATTGGACACAA
CCAGAGACGGTACCAGGCGGGCGCTCTTGGAAATGGTGCAGGCTTCTTCC
GCGCTGTCTCACGCTATCCGGTCTCCGTCATTCTGCGACAGAGAAATAAC
GACGTTGGATATGTTATCTAAAGACGTGGTTTACGCAACTCACAAGGTAC
TGGGGAGACCGGCGGCGAAGCAGACGTCGCATGCCTTAGTTTACGCAACT
CACAAGGTACTGGGGAGACCGGCGGCGAAGCAGACGTCGCATGCCTTA
back to top