mRNA_F-serratus_M_contig706.18265.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig706.18265.1
Unique NamemRNA_F-serratus_M_contig706.18265.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig706.18265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig706contigF-serratus_M_contig706:41416..41983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size568
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig706.18265.1prot_F-serratus_M_contig706.18265.1Fucus serratus malepolypeptideF-serratus_M_contig706 41461..41784 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932171.454754-UTR-F-serratus_M_contig706:41415..414601622932171.454754-UTR-F-serratus_M_contig706:41415..41460Fucus serratus maleUTRF-serratus_M_contig706 41416..41460 +
1690964181.9331694-UTR-F-serratus_M_contig706:41415..414601690964181.9331694-UTR-F-serratus_M_contig706:41415..41460Fucus serratus maleUTRF-serratus_M_contig706 41416..41460 +
1622932171.4806197-UTR-F-serratus_M_contig706:41784..419831622932171.4806197-UTR-F-serratus_M_contig706:41784..41983Fucus serratus maleUTRF-serratus_M_contig706 41785..41983 +
1690964181.9534159-UTR-F-serratus_M_contig706:41784..419831690964181.9534159-UTR-F-serratus_M_contig706:41784..41983Fucus serratus maleUTRF-serratus_M_contig706 41785..41983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932171.4689848-CDS-F-serratus_M_contig706:41460..417841622932171.4689848-CDS-F-serratus_M_contig706:41460..41784Fucus serratus maleCDSF-serratus_M_contig706 41461..41784 +
1690964181.9436717-CDS-F-serratus_M_contig706:41460..417841690964181.9436717-CDS-F-serratus_M_contig706:41460..41784Fucus serratus maleCDSF-serratus_M_contig706 41461..41784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig706.18265.1

>prot_F-serratus_M_contig706.18265.1 ID=prot_F-serratus_M_contig706.18265.1|Name=mRNA_F-serratus_M_contig706.18265.1|organism=Fucus serratus male|type=polypeptide|length=108bp
MRGLSGTNSMSFGSDFPVTNTARQSMWTWEPGTLSSQSPSVFYLFQHVIT
GTVPGILRRYIRTSGSLSYDSPAIIESVTCHTSYGRAPEAKLLPYHSLHM
ALHQKLN*
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mRNA from alignment at F-serratus_M_contig706:41416..41983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig706.18265.1 ID=mRNA_F-serratus_M_contig706.18265.1|Name=mRNA_F-serratus_M_contig706.18265.1|organism=Fucus serratus male|type=mRNA|length=568bp|location=Sequence derived from alignment at F-serratus_M_contig706:41416..41983+ (Fucus serratus male)
TCGGCCTCACCCTTGGGCCCTTTGCTACAAAGACGCACTCTTAACATGCG
AGGCTTATCAGGCACCAATTCAATGTCCTTCGGTTCAGACTTCCCAGTAA
CAAATACAGCGCGACAGAGTATGTGGACATGGGAACCCGGTACACTATCA
TCACAGTCCCCATCAGTTTTTTACCTGTTCCAGCATGTAATCACGGGGAC
AGTTCCGGGAATCCTTCGTCGGTACATTCGTACCTCCGGTTCTCTAAGCT
ACGATTCACCGGCTATCATCGAGTCGGTTACATGTCATACGAGCTACGGT
AGAGCACCTGAAGCGAAGCTCCTACCCTATCACTCTCTTCACATGGCTCT
TCATCAAAAACTAAACTGAGACAGCTAACCCGCTGAGCTCGTGCAGCGTA
ACTGCGACCTCGAGATCGCCCTCGCCCAGCTTCACCTTCTCTATTTCCAA
GACCTGCCTAAACAACCCCTCCGCCTCGTCGTACCGCGTTGCGTTCCGCA
GGCACACGCCGAGTCAATTCATCGTAACTGCAACCTGGAGATCGTCCTCG
CCCAGCTTCACCTTTTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig706:41416..41983+

>mRNA_F-serratus_M_contig706.18265.1 ID=mRNA_F-serratus_M_contig706.18265.1|Name=mRNA_F-serratus_M_contig706.18265.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig706:41416..41983+ (Fucus serratus male)
ATGCGAGGCTTATCAGGCACCAATTCAATGTCCTTCGGTTCAGACTTCCC
AGTAACAAATACAGCGCGACAGAGTATGTGGACATGGGAACCCGGTACAC
TATCATCACAGTCCCCATCAGTTTTTTACCTGTTCCAGCATGTAATCACG
GGGACAGTTCCGGGAATCCTTCGTCGGTACATTCGTACCTCCGGTTCTCT
AAGCTACGATTCACCGGCTATCATCGAGTCGGTTACATGTCATACGAGCT
ACGGTAGAGCACCTGAAGCGAAGCTCCTACCCTATCACTCTCTTCACATG
GCTCTTCATCAAAAACTAAACTGAATGCGAGGCTTATCAGGCACCAATTC
AATGTCCTTCGGTTCAGACTTCCCAGTAACAAATACAGCGCGACAGAGTA
TGTGGACATGGGAACCCGGTACACTATCATCACAGTCCCCATCAGTTTTT
TACCTGTTCCAGCATGTAATCACGGGGACAGTTCCGGGAATCCTTCGTCG
GTACATTCGTACCTCCGGTTCTCTAAGCTACGATTCACCGGCTATCATCG
AGTCGGTTACATGTCATACGAGCTACGGTAGAGCACCTGAAGCGAAGCTC
CTACCCTATCACTCTCTTCACATGGCTCTTCATCAAAAACTAAACTGA
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