mRNA_F-serratus_M_contig705.18257.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig705.18257.1
Unique NamemRNA_F-serratus_M_contig705.18257.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig705.18257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig705contigF-serratus_M_contig705:195949..196289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932169.217517-CDS-F-serratus_M_contig705:195948..1962871622932169.217517-CDS-F-serratus_M_contig705:195948..196287Fucus serratus maleCDSF-serratus_M_contig705 195949..196287 +
1690964180.909618-CDS-F-serratus_M_contig705:195948..1962871690964180.909618-CDS-F-serratus_M_contig705:195948..196287Fucus serratus maleCDSF-serratus_M_contig705 195949..196287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig705.18257.1prot_F-serratus_M_contig705.18257.1Fucus serratus malepolypeptideF-serratus_M_contig705 195949..196287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig705.18257.1

>prot_F-serratus_M_contig705.18257.1 ID=prot_F-serratus_M_contig705.18257.1|Name=mRNA_F-serratus_M_contig705.18257.1|organism=Fucus serratus male|type=polypeptide|length=113bp
PVSAPDAPPAPPQNPAEPIRDRVVRELGEEQEVRMPGRTRGQTRAILESH
HSTGLMSYAALAQGLATREAFDEAFRDYELSPPLAELPTAPASDVHTPST
VAEADSSEHAAIW
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mRNA from alignment at F-serratus_M_contig705:195949..196289+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig705.18257.1 ID=mRNA_F-serratus_M_contig705.18257.1|Name=mRNA_F-serratus_M_contig705.18257.1|organism=Fucus serratus male|type=mRNA|length=341bp|location=Sequence derived from alignment at F-serratus_M_contig705:195949..196289+ (Fucus serratus male)
CCGGTATCTGCACCTGACGCCCCACCCGCTCCGCCACAAAACCCGGCCGA
ACCAATCCGTGATCGCGTTGTTCGGGAGCTGGGAGAAGAGCAAGAAGTAC
GTATGCCTGGTCGCACGCGAGGTCAGACGCGAGCGATTCTGGAGTCTCAT
CACAGCACGGGCCTGATGTCTTATGCCGCATTGGCGCAAGGCCTGGCGAC
CCGTGAGGCATTCGACGAGGCCTTTCGGGACTACGAACTATCGCCGCCCC
TCGCTGAACTTCCGACTGCCCCCGCCAGTGACGTGCATACACCATCCACC
GTTGCCGAAGCGGACTCATCGGAGCATGCTGCGATATGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig705:195949..196289+

>mRNA_F-serratus_M_contig705.18257.1 ID=mRNA_F-serratus_M_contig705.18257.1|Name=mRNA_F-serratus_M_contig705.18257.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig705:195949..196289+ (Fucus serratus male)
CCGGTATCTGCACCTGACGCCCCACCCGCTCCGCCACAAAACCCGGCCGA
ACCAATCCGTGATCGCGTTGTTCGGGAGCTGGGAGAAGAGCAAGAAGTAC
GTATGCCTGGTCGCACGCGAGGTCAGACGCGAGCGATTCTGGAGTCTCAT
CACAGCACGGGCCTGATGTCTTATGCCGCATTGGCGCAAGGCCTGGCGAC
CCGTGAGGCATTCGACGAGGCCTTTCGGGACTACGAACTATCGCCGCCCC
TCGCTGAACTTCCGACTGCCCCCGCCAGTGACGTGCATACACCATCCACC
GTTGCCGAAGCGGACTCATCGGAGCATGCTGCGATATGGCCGGTATCTGC
ACCTGACGCCCCACCCGCTCCGCCACAAAACCCGGCCGAACCAATCCGTG
ATCGCGTTGTTCGGGAGCTGGGAGAAGAGCAAGAAGTACGTATGCCTGGT
CGCACGCGAGGTCAGACGCGAGCGATTCTGGAGTCTCATCACAGCACGGG
CCTGATGTCTTATGCCGCATTGGCGCAAGGCCTGGCGACCCGTGAGGCAT
TCGACGAGGCCTTTCGGGACTACGAACTATCGCCGCCCCTCGCTGAACTT
CCGACTGCCCCCGCCAGTGACGTGCATACACCATCCACCGTTGCCGAAGC
GGACTCATCGGAGCATGCTGCGATATGG
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