mRNA_F-serratus_M_contig704.18242.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig704.18242.1
Unique NamemRNA_F-serratus_M_contig704.18242.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig704.18242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig704contigF-serratus_M_contig704:220971..222018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1050
Cds size1047
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932162.5689886-CDS-F-serratus_M_contig704:220970..2220171622932162.5689886-CDS-F-serratus_M_contig704:220970..222017Fucus serratus maleCDSF-serratus_M_contig704 220971..222017 +
1690964177.645706-CDS-F-serratus_M_contig704:220970..2220171690964177.645706-CDS-F-serratus_M_contig704:220970..222017Fucus serratus maleCDSF-serratus_M_contig704 220971..222017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig704.18242.1prot_F-serratus_M_contig704.18242.1Fucus serratus malepolypeptideF-serratus_M_contig704 220971..222017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig704.18242.1

>prot_F-serratus_M_contig704.18242.1 ID=prot_F-serratus_M_contig704.18242.1|Name=mRNA_F-serratus_M_contig704.18242.1|organism=Fucus serratus male|type=polypeptide|length=349bp
PVAVAASAAADDPWPLLGLGGRRKSPGKLGPAPGEPPALSVSAASVTSGA
SGERRGSGSGGGGGGGISRTKTAPQGTVAHGGVDPGCVVYPGSGNNVQEA
KNLRSTAPFPGRSGVLGAYGTGGDGSEDEESQQRSQSARATHDGDHEREE
ENRPVVNWKRDVWGQSRLQTVTTWPLVLPMPSPPTASTDSSVRFERKSEN
RDDGASAYAAAISVQSGRSAGPGGGIFSGEEGRAVGMGLWDALTPFVRRQ
RGSGAAPGGGVGELDSYESPRSCRNSSSAANIDSGAAAAPLRTRRGGTPD
LGTHHSGGGIYLPPERKQTSSETDDLEGSRSHSVSSGQGRDSLEGSLLG
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mRNA from alignment at F-serratus_M_contig704:220971..222018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig704.18242.1 ID=mRNA_F-serratus_M_contig704.18242.1|Name=mRNA_F-serratus_M_contig704.18242.1|organism=Fucus serratus male|type=mRNA|length=1048bp|location=Sequence derived from alignment at F-serratus_M_contig704:220971..222018+ (Fucus serratus male)
CCCGTGGCAGTAGCTGCTTCGGCGGCAGCGGACGATCCCTGGCCGTTGCT
GGGGTTGGGAGGGAGGCGAAAAAGCCCCGGAAAGTTGGGGCCAGCGCCCG
GCGAGCCTCCTGCGTTGTCCGTCAGCGCCGCCTCCGTCACGAGCGGCGCG
AGCGGCGAGCGGCGGGGTAGCGGCAGCGGTGGCGGTGGCGGTGGAGGAAT
ATCGAGGACGAAGACCGCGCCGCAGGGGACCGTCGCGCACGGCGGTGTCG
ATCCGGGATGCGTCGTATACCCGGGGAGTGGAAATAACGTCCAGGAGGCG
AAAAACCTTCGCTCTACCGCCCCATTTCCCGGAAGATCCGGTGTTTTAGG
TGCCTATGGCACGGGTGGTGACGGCAGTGAAGATGAAGAAAGCCAACAGC
GGTCGCAGTCGGCGCGAGCGACCCATGACGGGGACCACGAGCGGGAGGAA
GAGAATAGACCCGTCGTCAACTGGAAGCGAGACGTCTGGGGGCAGAGCCG
TCTCCAAACCGTTACGACGTGGCCACTCGTTTTGCCCATGCCGTCACCGC
CAACGGCGTCCACCGATTCCTCGGTCCGCTTCGAGAGGAAGAGCGAGAAC
CGCGACGACGGTGCCTCCGCTTACGCCGCCGCCATCTCCGTCCAGAGCGG
ACGGTCCGCCGGCCCTGGGGGGGGTATCTTTTCCGGGGAGGAGGGACGAG
CAGTGGGGATGGGATTATGGGACGCGTTGACCCCCTTCGTCCGGCGGCAG
CGCGGGTCCGGTGCCGCTCCCGGTGGGGGAGTTGGTGAGCTCGACTCTTA
CGAGAGCCCGAGGTCGTGCCGTAATTCATCCAGCGCCGCGAACATAGACA
GTGGCGCCGCTGCTGCACCACTCCGGACCAGGCGGGGTGGCACGCCAGAT
CTGGGTACTCATCACAGCGGCGGCGGTATTTATTTGCCTCCGGAGCGAAA
ACAGACATCCTCAGAAACGGATGATCTTGAAGGGTCGCGGAGTCACAGCG
TGAGCTCAGGGCAGGGTCGCGACAGTCTCGAGGGCAGCTTGTTAGGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig704:220971..222018+

>mRNA_F-serratus_M_contig704.18242.1 ID=mRNA_F-serratus_M_contig704.18242.1|Name=mRNA_F-serratus_M_contig704.18242.1|organism=Fucus serratus male|type=CDS|length=2094bp|location=Sequence derived from alignment at F-serratus_M_contig704:220971..222018+ (Fucus serratus male)
CCCGTGGCAGTAGCTGCTTCGGCGGCAGCGGACGATCCCTGGCCGTTGCT
GGGGTTGGGAGGGAGGCGAAAAAGCCCCGGAAAGTTGGGGCCAGCGCCCG
GCGAGCCTCCTGCGTTGTCCGTCAGCGCCGCCTCCGTCACGAGCGGCGCG
AGCGGCGAGCGGCGGGGTAGCGGCAGCGGTGGCGGTGGCGGTGGAGGAAT
ATCGAGGACGAAGACCGCGCCGCAGGGGACCGTCGCGCACGGCGGTGTCG
ATCCGGGATGCGTCGTATACCCGGGGAGTGGAAATAACGTCCAGGAGGCG
AAAAACCTTCGCTCTACCGCCCCATTTCCCGGAAGATCCGGTGTTTTAGG
TGCCTATGGCACGGGTGGTGACGGCAGTGAAGATGAAGAAAGCCAACAGC
GGTCGCAGTCGGCGCGAGCGACCCATGACGGGGACCACGAGCGGGAGGAA
GAGAATAGACCCGTCGTCAACTGGAAGCGAGACGTCTGGGGGCAGAGCCG
TCTCCAAACCGTTACGACGTGGCCACTCGTTTTGCCCATGCCGTCACCGC
CAACGGCGTCCACCGATTCCTCGGTCCGCTTCGAGAGGAAGAGCGAGAAC
CGCGACGACGGTGCCTCCGCTTACGCCGCCGCCATCTCCGTCCAGAGCGG
ACGGTCCGCCGGCCCTGGGGGGGGTATCTTTTCCGGGGAGGAGGGACGAG
CAGTGGGGATGGGATTATGGGACGCGTTGACCCCCTTCGTCCGGCGGCAG
CGCGGGTCCGGTGCCGCTCCCGGTGGGGGAGTTGGTGAGCTCGACTCTTA
CGAGAGCCCGAGGTCGTGCCGTAATTCATCCAGCGCCGCGAACATAGACA
GTGGCGCCGCTGCTGCACCACTCCGGACCAGGCGGGGTGGCACGCCAGAT
CTGGGTACTCATCACAGCGGCGGCGGTATTTATTTGCCTCCGGAGCGAAA
ACAGACATCCTCAGAAACGGATGATCTTGAAGGGTCGCGGAGTCACAGCG
TGAGCTCAGGGCAGGGTCGCGACAGTCTCGAGGGCAGCTTGTTAGGGCCC
GTGGCAGTAGCTGCTTCGGCGGCAGCGGACGATCCCTGGCCGTTGCTGGG
GTTGGGAGGGAGGCGAAAAAGCCCCGGAAAGTTGGGGCCAGCGCCCGGCG
AGCCTCCTGCGTTGTCCGTCAGCGCCGCCTCCGTCACGAGCGGCGCGAGC
GGCGAGCGGCGGGGTAGCGGCAGCGGTGGCGGTGGCGGTGGAGGAATATC
GAGGACGAAGACCGCGCCGCAGGGGACCGTCGCGCACGGCGGTGTCGATC
CGGGATGCGTCGTATACCCGGGGAGTGGAAATAACGTCCAGGAGGCGAAA
AACCTTCGCTCTACCGCCCCATTTCCCGGAAGATCCGGTGTTTTAGGTGC
CTATGGCACGGGTGGTGACGGCAGTGAAGATGAAGAAAGCCAACAGCGGT
CGCAGTCGGCGCGAGCGACCCATGACGGGGACCACGAGCGGGAGGAAGAG
AATAGACCCGTCGTCAACTGGAAGCGAGACGTCTGGGGGCAGAGCCGTCT
CCAAACCGTTACGACGTGGCCACTCGTTTTGCCCATGCCGTCACCGCCAA
CGGCGTCCACCGATTCCTCGGTCCGCTTCGAGAGGAAGAGCGAGAACCGC
GACGACGGTGCCTCCGCTTACGCCGCCGCCATCTCCGTCCAGAGCGGACG
GTCCGCCGGCCCTGGGGGGGGTATCTTTTCCGGGGAGGAGGGACGAGCAG
TGGGGATGGGATTATGGGACGCGTTGACCCCCTTCGTCCGGCGGCAGCGC
GGGTCCGGTGCCGCTCCCGGTGGGGGAGTTGGTGAGCTCGACTCTTACGA
GAGCCCGAGGTCGTGCCGTAATTCATCCAGCGCCGCGAACATAGACAGTG
GCGCCGCTGCTGCACCACTCCGGACCAGGCGGGGTGGCACGCCAGATCTG
GGTACTCATCACAGCGGCGGCGGTATTTATTTGCCTCCGGAGCGAAAACA
GACATCCTCAGAAACGGATGATCTTGAAGGGTCGCGGAGTCACAGCGTGA
GCTCAGGGCAGGGTCGCGACAGTCTCGAGGGCAGCTTGTTAGGG
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