mRNA_F-serratus_M_contig703.18230.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig703.18230.1
Unique NamemRNA_F-serratus_M_contig703.18230.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig703.18230.1 vs. uniprot
Match: A0A6H5K7T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T5_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.160e-12
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 FPLQDKKRAFEEVYSIVRALKDYTVYCQTTYEATAEGGMQKMVSLLSLTLEPTKDLVMLRVPEI 192
            FPL  ++  F+EVYSI+R +KD T+YCQ+  EATA G M ++V LL+ TLEP +DL ++ VP I
Sbjct:  500 FPLGKRRDEFDEVYSILRVMKDVTLYCQSASEATAGGAMNRVVLLLTTTLEPMEDLEIVHVPVI 563
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BLAST of mRNA_F-serratus_M_contig703.18230.1 vs. uniprot
Match: A0A6H5KHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.570e-12
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    1 FPLQDKKRAFEEVYSIVRALKDYTVYCQTTYEATAEGGMQKMVSLLSLTLEPTKDLVMLRVPEI 192
            FPL  ++  FEEVYSI+R +KD T+YCQ+  E TA G M ++V LL+ TLEP +DL ++ VP I
Sbjct:  158 FPLGKRRDGFEEVYSILRVVKDVTLYCQSASEVTAGGAMNRIVLLLTTTLEPMEDLEIVHVPVI 221
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BLAST of mRNA_F-serratus_M_contig703.18230.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.960e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 FPLQDKKRAFEEVYSIVRALKDYTVYCQTTYEATAEGGMQKMVSLLSLTLEPTKDL 168
            FPL + K   EEVYSI+RA+K  T YCQ TYEAT EGG+++ V LL  TLEP+K L
Sbjct:  491 FPLANYKTEIEEVYSILRAVKTVTEYCQKTYEATMEGGLRQTVQLLISTLEPSKPL 546
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BLAST of mRNA_F-serratus_M_contig703.18230.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.960e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 FPLQDKKRAFEEVYSIVRALKDYTVYCQTTYEATAEGGMQKMVSLLSLTLEPTKDL 168
            FPL + K   EEVYSI+RA+K  T YCQ TYEAT EGG+++ V LL  TLEP+K L
Sbjct:  412 FPLANYKTEIEEVYSILRAVKTVTEYCQKTYEATMEGGLRQTVQLLISTLEPSKPL 467
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BLAST of mRNA_F-serratus_M_contig703.18230.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.410e-11
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 FPLQDKKRAFEEVYSIVRALKDYTVYCQTTYEATAEGGMQKMVSLLSLTLEPTKDL 168
            FPL+ +K+  EEVY+I+ A+K   VY QTTYE+TA+GG+Q++V L + TLEP + L
Sbjct:  344 FPLRSRKKEVEEVYTIINAVKAVVVYSQTTYESTAQGGLQRLVVLATSTLEPMRPL 399
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BLAST of mRNA_F-serratus_M_contig703.18230.1 vs. uniprot
Match: D7FX26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX26_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.220e-8
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 FPLQDKKRAFEEVYSIVRALKDYTVYCQTTYEATAEGGMQKMVSLLSLTLEPTKDLVMLRVPEI 192
            FPL   +  FEEV+SI+ A  +   YCQ TY+ATAEGG+ ++V LL+ TLE  + L +  VP I
Sbjct:  221 FPLATLRTEFEEVHSIMSAASNVAEYCQETYKATAEGGLTRIVVLLTDTLESNETLRVQHVPAI 284
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig703.18230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K7T5_9PHAE1.160e-1253.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ8_9PHAE1.570e-1253.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Z1_9PHAE2.960e-1260.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX27_9PHAE2.960e-1260.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4Z8_ECTSI1.410e-1153.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FX26_ECTSI1.220e-848.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig703contigF-serratus_M_contig703:3116..4442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue9e-09
Seed eggNOG ortholog2880.D7G4Z8
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZK4@1,2SARG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size216
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932161.5488348-CDS-F-serratus_M_contig703:3117..33031622932161.5488348-CDS-F-serratus_M_contig703:3117..3303Fucus serratus maleCDSF-serratus_M_contig703 3118..3303 -
1690964177.272558-CDS-F-serratus_M_contig703:3117..33031690964177.272558-CDS-F-serratus_M_contig703:3117..3303Fucus serratus maleCDSF-serratus_M_contig703 3118..3303 -
1622932161.5818229-CDS-F-serratus_M_contig703:4415..44421622932161.5818229-CDS-F-serratus_M_contig703:4415..4442Fucus serratus maleCDSF-serratus_M_contig703 4416..4442 -
1690964177.2846076-CDS-F-serratus_M_contig703:4415..44421690964177.2846076-CDS-F-serratus_M_contig703:4415..4442Fucus serratus maleCDSF-serratus_M_contig703 4416..4442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig703.18230.1prot_F-serratus_M_contig703.18230.1Fucus serratus malepolypeptideF-serratus_M_contig703 3118..4442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig703.18230.1

>prot_F-serratus_M_contig703.18230.1 ID=prot_F-serratus_M_contig703.18230.1|Name=mRNA_F-serratus_M_contig703.18230.1|organism=Fucus serratus male|type=polypeptide|length=71bp
FPLQDKKRAFEEVYSIVRALKDYTVYCQTTYEATAEGGMQKMVSLLSLTL
EPTKDLVMLRVPEIIVVGEEE
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mRNA from alignment at F-serratus_M_contig703:3116..4442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig703.18230.1 ID=mRNA_F-serratus_M_contig703.18230.1|Name=mRNA_F-serratus_M_contig703.18230.1|organism=Fucus serratus male|type=mRNA|length=1327bp|location=Sequence derived from alignment at F-serratus_M_contig703:3116..4442- (Fucus serratus male)
TTCCCCCTCCAAGACAAGAAGAGAGCGGTGAGCATTTTACTAGTTTTTGT
TTGGTAACGTTCACGGTTATGATGGTGCGAAAGACATGTTTAAGGGTTGG
CCGTTCCCACCCCAGCCGAATACGTATATGACATACATATTTACGTTTCG
TTCCATATACAATCCGTTGGACAGTCGAACATGAGCATAGTGTGTCACTT
TGTTTTTCTTTGTCTTGTCTCTCAGATCATTTTCCAATTCTGTTGAGTTG
ATCCTCTTTTGATGTGTTTTTATCCATTTTCTTGTACTTGTAGGATGTAG
CGACCACGATATGGAAAGGGGGAGCCCATGTCTGCGACCACGGGCTCGAG
AGGTCGGACTTGAGTGTGTTAATAAAACGGACGTATGGACCGGCTGTGTA
CCGTGATCGTCTTCTGTCTTTGATTTTTTGGTGAAACTGTATAACCCCGG
GTGCAAACAAAGAAAGGGGGGAATGTTTGTATTTTTGGGCGATACCCGGG
GCGGGTCATCCACTCCGGGGGAACAAAACCAATCAAACACAAACACACAT
GGTGCATTCACACTTTTTGCTGAACCGCAGCATGTTGTAACACGACTCAT
CGCCTTTTACGCACCAGAATGCACTCGTATTGGTCAACGCGGATACACGT
GAGCCATCCCAAGTACAGTAAATAGTAAGAAAGTACACACGTAGTCGATC
CCCAGTCAAATGGGCACAAACGTATTGTACGGTCAGTACATACATGATGT
TTCGCTGCTCATTTACTACAGACGCCGTTTCAGTACACCACATACACTTT
GTGTTTTATTTTTTATTTTGCGGCGACCCGTTGATGCCGTGTCTTCGTGA
CCACGGGCACTAGATATTTTGGACAAGAGCTAATGTGAGAAGTAACAACA
ACAATACACATACATCCTGCCCGTGTTACTTCAGTTCAGTCTGGCGGCTG
CCCCCTCCTGGGATATTGTGTCATACGGAGTTTTTGGTTCAGTCTGCCAA
ATAAGCCTTTTTCACCGCCCTCGTCATCAACCACCCCTTCATATCGGTTT
TCGAATATCAAATGATGAGGCCACTTTATACTGATCTGTCACATCATCTC
TCTTTCTTATTGCCCTGTTCTCCTACTTACTTTTGCAAGTTTGAGGAGGT
CTACAGCATCGTGCGCGCGCTCAAGGACTACACGGTGTACTGCCAGACGA
CGTACGAGGCCACTGCGGAAGGGGGGATGCAGAAGATGGTCTCCCTCCTG
AGTCTGACCCTGGAGCCCACCAAGGACCTCGTGATGCTGCGCGTTCCGGA
AATCATCGTCGTCGGCGAGGAGGAGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig703:3116..4442-

>mRNA_F-serratus_M_contig703.18230.1 ID=mRNA_F-serratus_M_contig703.18230.1|Name=mRNA_F-serratus_M_contig703.18230.1|organism=Fucus serratus male|type=CDS|length=426bp|location=Sequence derived from alignment at F-serratus_M_contig703:3116..4442- (Fucus serratus male)
TTCCCCCTCCAAGACAAGAAGAGAGCGTTCCCCCTCCAAGACAAGAAGAG
AGCGTTTGAGGAGGTCTACAGCATCGTGCGCGCGCTCAAGGACTACACGG
TGTACTGCCAGACGACGTACGAGGCCACTGCGGAAGGGGGGATGCAGAAG
ATGGTCTCCCTCCTGAGTCTGACCCTGGAGCCCACCAAGGACCTCGTGAT
GCTGCGCGTTCCGGAAATCATCGTCGTCGGCGAGGAGGAGTTTGAGGAGG
TCTACAGCATCGTGCGCGCGCTCAAGGACTACACGGTGTACTGCCAGACG
ACGTACGAGGCCACTGCGGAAGGGGGGATGCAGAAGATGGTCTCCCTCCT
GAGTCTGACCCTGGAGCCCACCAAGGACCTCGTGATGCTGCGCGTTCCGG
AAATCATCGTCGTCGGCGAGGAGGAG
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