mRNA_F-serratus_M_contig702.18225.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig702.18225.1 vs. uniprot
Match: A0A6H5JMN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN8_9PHAE) HSP 1 Score: 413 bits (1061), Expect = 7.610e-134 Identity = 209/316 (66.14%), Postives = 248/316 (78.48%), Query Frame = 1
Query: 511 SSSRWRRQGCRKRSIALSGVGSIMSPXXXXXXXXXXXXXXEDGMRELTRQEGEEAAALLAANAKTHLGGRSDYNDFMESIDGVQEWLRVLAKKRVGCRRMVLGSFKRGKLLSIVAAEVVWSTGSLSRDVRICSRLIVVNPAYDKRAVGFATVDQLKSFGRQNALLLDLSPMMAVPSCRIFCLASTQTLEEDPERLFQDPLVQQFNSRVRRCCYVLDDIPEGADLGPYWYEGTLPRSVRFFFRKKFHAVNEFEVTLQWPGAGLATGSGTVGGARVIPMEEAEAAKDIPGHSMIREIERRLSNRLLAEMQGENPVLND 1458
S+SRWRR + S+ LSGVGS ++P EDG+RELTR+E E A A +AK H +S+Y+D +E + G++ W + L +KRVGC+R+VLG+FKRG L+ I AA+VVWSTG LSRDVR+ LI VNP YD R VGF T+ ++KSFG QNALLLDLSP+MAVP R+FCL STQTL+EDPE +FQDPLVQQ+NSRVRR CYVLDDIP ADLGPYWYEG LPRSVRFFFRK+FHAVNEFEVTLQ PGAGL+TGSGTVGGARVI M+EAEAA +IPGH +REIERRL++RLL EMQGENPV +D
Sbjct: 60 STSRWRR----RSSLQLSGVGSTVAPPPTTQTTARGGG--EDGIRELTREESEAAILSFADSAKRHSRTQSEYDDHIELLQGMRSWGQPLTQKRVGCKRLVLGNFKRGNLVCIAAAQVVWSTGYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMAVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYWYEGVLPRSVRFFFRKRFHAVNEFEVTLQRPGAGLSTGSGTVGGARVIAMDEAEAATEIPGHGKVREIERRLASRLLEEMQGENPVRSD 369
BLAST of mRNA_F-serratus_M_contig702.18225.1 vs. uniprot
Match: D8LH52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH52_ECTSI) HSP 1 Score: 398 bits (1022), Expect = 1.240e-128 Identity = 194/276 (70.29%), Postives = 228/276 (82.61%), Query Frame = 1
Query: 631 EDGMRELTRQEGEEAAALLAANAKTHLGGRSDYNDFMESIDGVQEWLRVLAKKRVGCRRMVLGSFKRGKLLSIVAAEVVWSTGSLSRDVRICSRLIVVNPAYDKRAVGFATVDQLKSFGRQNALLLDLSPMMAVPSCRIFCLASTQTLEEDPERLFQDPLVQQFNSRVRRCCYVLDDIPEGADLGPYWYEGTLPRSVRFFFRKKFHAVNEFEVTLQWPGAGLATGSGTVGGARVIPMEEAEAAKDIPGHSMIREIERRLSNRLLAEMQGENPVLND 1458
EDG+RELTR+E E A A +AK H +SDY+D +E + G++ W + L +KRVGC+R+VLG+FKRG L+ I AA+VVWSTG LSRDVR+ LI VNP YD R VGF T+ ++KSFG QNALLLDLSP+M VP R+FCL STQTL+EDPE +FQDPLVQQ+NSRVRR CYVLDDIP ADLGPYWYEG LPRSVRFFFRK+FHAVNEFEVTLQ PGAGL+TGSGTVGGARVI M+EAEAA +IPGH +REIERRL++RLL E+QGENPV +D
Sbjct: 54 EDGIRELTREESEAAILSFADSAKRHCRTQSDYDDHIELLQGMRSWGQPLTQKRVGCKRVVLGNFKRGNLVCIAAAQVVWSTGYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMTVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYWYEGVLPRSVRFFFRKRFHAVNEFEVTLQRPGAGLSTGSGTVGGARVIAMDEAEAATEIPGHGKVREIERRLASRLLEEIQGENPVRSD 329
BLAST of mRNA_F-serratus_M_contig702.18225.1 vs. uniprot
Match: A0A835YSI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI1_9STRA) HSP 1 Score: 218 bits (556), Expect = 3.930e-61 Identity = 121/275 (44.00%), Postives = 171/275 (62.18%), Query Frame = 1
Query: 634 DGMRELTRQEGEEAAALLAANAKTHLGGRSDYNDFMESIDGVQEWLRVLAK-KRVGCRRMVLGSFKRGKLLSIVAAEVVWSTGSLSRDVRICSRLIVVNPAYDKRAVGFATVDQLKSFGRQNALLLDLSPMMAVPSCRIFCLASTQTLEEDPERLFQDPLVQQFNSRVRRCCYVLDDIPEGADLGPYWYEGTLPRSVRFFFRKKFHAV-NEFEVTLQWPGAGLATGSGTVGGARVIPMEEAEAAKDIPGHSMIREIERRLSNRLLAEMQGENPVL 1452
DG+R +T + +EA A A A + ++ + +E I ++EW K KR+GC++M LGS++ G+LLS+ A ++ W G RDVR+ RL+ +NP +DKR VGF ++ LK+ GR NALLLD S + VP R+F L S +TL+ DPE + DP + S V+R C+VLD+IPE ADLGP+W+EGT V F+FRK+ + NEFE++ P AG ATGSGTVGGARVI + E + KDI G + + S + E GE+P +
Sbjct: 15 DGLRPMTAAQVKEALANYKAGAFKYCQSSAEQKEQLEMISMMREWADTFEKYKRIGCKKMTLGSYRAGRLLSVAALQIEWR-GFPERDVRMVVRLLALNPMHDKRIVGFEMMESLKALGRDNALLLDCSALREVPCLRVFALGSIRTLDADPELV--DPRKLFYKSHVKRTCFVLDNIPEWADLGPFWFEGTTHDGVSFWFRKRTPMLLNEFEISWDHPKAGNATGSGTVGGARVIGIGELDQCKDIKGWAK----PEKSSTMHMEEDVGEDPEM 282
BLAST of mRNA_F-serratus_M_contig702.18225.1 vs. uniprot
Match: A0A0G4EB14_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EB14_VITBC) HSP 1 Score: 79.7 bits (195), Expect = 4.540e-12 Identity = 69/225 (30.67%), Postives = 108/225 (48.00%), Query Frame = 1
Query: 916 IVVNPAY--DKRAVGFATVDQLKSFGRQNALLLDLSPMMAVPSCRIFCL-ASTQTLEEDPERLFQDPLVQQFNSRVRRCCYVLDDIPEGADLGPYWYEGTLPRSVRFFFRKKFHAVNEFEVTLQWPGAGLA-TGSGTVGGARVIPMEEAEAAKD---IPGH--------SMIREIERRLSNRLLAEMQ-GENPVLND*WVSR*KAGQRSGRSWG---DQIEAEPF 1533
+ +NP + ++ + +++ G++NA+++DL+ + PS F L S TL+ +P + DP V + + +R +D DL YW++ F+FR++F + EFEV + P G++ TGSGTVGGA ++P+ + + K IPG+ S + I RRL RL MQ GE GQR GR G D E E F
Sbjct: 166 MALNPTFPGERDRAALDLLREIRELGKENAMIVDLTALKDFPSLMKFWLDGSFTTLDIEP--VTNDPRVVRHKALLRSPTLTIDG--PWPDLPFYWFQSECDDGCAFYFRRRFRSNTEFEVLFEPPRVGVSMTGSGTVGGALIVPLIPSPSNKQDVSIPGNVSMGRGQLSAVCAIRRRLKERLDTMMQQGEGGQ-----------GQRHGRGEGPDSDLFENENF 375
BLAST of mRNA_F-serratus_M_contig702.18225.1 vs. uniprot
Match: A0A0G4EDF6_VITBC (Uncharacterized protein (Fragment) n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EDF6_VITBC) HSP 1 Score: 61.6 bits (148), Expect = 2.670e-7 Identity = 44/130 (33.85%), Postives = 65/130 (50.00%), Query Frame = 1
Query: 1081 DPERLFQDPLVQQFNSRVRRCCYVLDDIPEGADLGPYWYEGTLPRSVRFFFRKKFHAVNEFEVTLQWPGAGLA-TGSGTVGGARVIPMEEAEAAKD---IPGH--------SMIREIERRLSNRLLAEMQ 1434
D E + DP V + + +R +D DL YW++ F+FR++F + EFEV + P G++ TGSGTVGGA ++P+ + + K IPG+ S + I RRL RL MQ
Sbjct: 7 DIEPVTNDPRVVRHKALLRSPTLTIDG--PWPDLPFYWFQSECDDGCAFYFRRRFRSNTEFEVLFEPPRVGVSMTGSGTVGGALIVPLIPSPSNKQDVSIPGNVSMGRGQLSAVCAIRRRLKERLDTMMQ 134 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig702.18225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig702.18225.1 >prot_F-serratus_M_contig702.18225.1 ID=prot_F-serratus_M_contig702.18225.1|Name=mRNA_F-serratus_M_contig702.18225.1|organism=Fucus serratus male|type=polypeptide|length=383bp MKRSSRVAFFLALVDKSFAFCPAVTGDLLSFSSNPIALLVTGTGNSVSGGback to top mRNA from alignment at F-serratus_M_contig702:137132..156404+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig702.18225.1 ID=mRNA_F-serratus_M_contig702.18225.1|Name=mRNA_F-serratus_M_contig702.18225.1|organism=Fucus serratus male|type=mRNA|length=19273bp|location=Sequence derived from alignment at F-serratus_M_contig702:137132..156404+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig702:137132..156404+ >mRNA_F-serratus_M_contig702.18225.1 ID=mRNA_F-serratus_M_contig702.18225.1|Name=mRNA_F-serratus_M_contig702.18225.1|organism=Fucus serratus male|type=CDS|length=2298bp|location=Sequence derived from alignment at F-serratus_M_contig702:137132..156404+ (Fucus serratus male)back to top |