mRNA_F-serratus_M_contig7015.18217.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7015.18217.1
Unique NamemRNA_F-serratus_M_contig7015.18217.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7015.18217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7015contigF-serratus_M_contig7015:6773..6990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size179
Cds size108
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7015.18217.1prot_F-serratus_M_contig7015.18217.1Fucus serratus malepolypeptideF-serratus_M_contig7015 6810..6956 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932158.3098767-UTR-F-serratus_M_contig7015:6772..68091622932158.3098767-UTR-F-serratus_M_contig7015:6772..6809Fucus serratus maleUTRF-serratus_M_contig7015 6773..6809 +
1690964175.4655223-UTR-F-serratus_M_contig7015:6772..68091690964175.4655223-UTR-F-serratus_M_contig7015:6772..6809Fucus serratus maleUTRF-serratus_M_contig7015 6773..6809 +
1622932158.36239-UTR-F-serratus_M_contig7015:6956..69901622932158.36239-UTR-F-serratus_M_contig7015:6956..6990Fucus serratus maleUTRF-serratus_M_contig7015 6957..6990 +
1690964175.4961624-UTR-F-serratus_M_contig7015:6956..69901690964175.4961624-UTR-F-serratus_M_contig7015:6956..6990Fucus serratus maleUTRF-serratus_M_contig7015 6957..6990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932158.3291187-CDS-F-serratus_M_contig7015:6809..68741622932158.3291187-CDS-F-serratus_M_contig7015:6809..6874Fucus serratus maleCDSF-serratus_M_contig7015 6810..6874 +
1690964175.4744039-CDS-F-serratus_M_contig7015:6809..68741690964175.4744039-CDS-F-serratus_M_contig7015:6809..6874Fucus serratus maleCDSF-serratus_M_contig7015 6810..6874 +
1622932158.348695-CDS-F-serratus_M_contig7015:6913..69561622932158.348695-CDS-F-serratus_M_contig7015:6913..6956Fucus serratus maleCDSF-serratus_M_contig7015 6914..6956 +
1690964175.483005-CDS-F-serratus_M_contig7015:6913..69561690964175.483005-CDS-F-serratus_M_contig7015:6913..6956Fucus serratus maleCDSF-serratus_M_contig7015 6914..6956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7015.18217.1

>prot_F-serratus_M_contig7015.18217.1 ID=prot_F-serratus_M_contig7015.18217.1|Name=mRNA_F-serratus_M_contig7015.18217.1|organism=Fucus serratus male|type=polypeptide|length=36bp
MFSMGRKTTASKCCVHNKPFQTTKTINRGCMSFMV*
back to top

mRNA from alignment at F-serratus_M_contig7015:6773..6990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7015.18217.1 ID=mRNA_F-serratus_M_contig7015.18217.1|Name=mRNA_F-serratus_M_contig7015.18217.1|organism=Fucus serratus male|type=mRNA|length=218bp|location=Sequence derived from alignment at F-serratus_M_contig7015:6773..6990+ (Fucus serratus male)
GATTCAAGCGTTCGCCCAAAAGTTTGAGGAATACAAAATGTTCAGCATGG
GCCGCAAAACCACCGCCTCAAAGTGCTGCGTTCACAACAAGCCGTTCCAA
ACGCACTGCCCCTGTCGCAGGTGAGAGTGTGCTGCAAAAAGTACGAAAAC
AATAAATCGGGGATGTATGTCGTTCATGGTCTAGTGCAACCTTTCGTTTT
GATGCCTGGTGGAAACTG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig7015:6773..6990+

>mRNA_F-serratus_M_contig7015.18217.1 ID=mRNA_F-serratus_M_contig7015.18217.1|Name=mRNA_F-serratus_M_contig7015.18217.1|organism=Fucus serratus male|type=CDS|length=216bp|location=Sequence derived from alignment at F-serratus_M_contig7015:6773..6990+ (Fucus serratus male)
ATGTTCAGCATGGGCCGCAAAACCACCGCCTCAAAGTGCTGCGTTCACAA
CAAGCCGTTCCAAACATGTTCAGCATGGGCCGCAAAACCACCGCCTCAAA
GTGCTGCGTTCACAACAAGCCGTTCCAAACTACGAAAACAATAAATCGGG
GATGTATGTCGTTCATGGTCTAGTACGAAAACAATAAATCGGGGATGTAT
GTCGTTCATGGTCTAG
back to top