mRNA_F-serratus_M_contig7007.18212.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7007.18212.1
Unique NamemRNA_F-serratus_M_contig7007.18212.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7007.18212.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.100e-7
Identity = 35/118 (29.66%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:  118 MMEVDRLAGDLHRLGDKSVTKLRKCVIIVSGLSADFKMECRILENNRDGLNRAEIERVVGSQYNRLHRQQQDSKVLSASRGTIAANREKGKNRRLYNKFDGKCFNCGKKGHRAVDCRS 471
            MM+ D+L  ++  + D  +      VI++  L  DF    RILE+   G++    +  +  ++ R+  ++     L A+RG I+  + +     L  +F+GKCF CGK+GHR  +CR+
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILES-MPGIDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNECRT 119
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BLAST of mRNA_F-serratus_M_contig7007.18212.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.090e-7
Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:  118 MMEVDRLAGDLHRLGDKSVTKLRKCVIIVSGLSADFKMECRILENNRDGLNRAEIERVVGSQYNRLHRQQQDSKVLSASRGTIAANREKGKNRRLYNKFDGKCFNCGKKGHRAVDCRS 471
            MM+ D+L  ++  +GD  +      VI++  L  +F    RILEN   G++    +     ++ R+  ++     L  +RG I+  + +     +  +F+GKCF CGK+GHR  +CR+
Sbjct:    4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENIT-GIDLMSAKETPRREWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYECRT 119
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7007.18212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F0W6E8_9STRA1.100e-729.66Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
F0X0S7_9STRA3.090e-728.81Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7007contigF-serratus_M_contig7007:10239..10715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932157.7173126-CDS-F-serratus_M_contig7007:10238..107151622932157.7173126-CDS-F-serratus_M_contig7007:10238..10715Fucus serratus maleCDSF-serratus_M_contig7007 10239..10715 -
1690964175.1704607-CDS-F-serratus_M_contig7007:10238..107151690964175.1704607-CDS-F-serratus_M_contig7007:10238..10715Fucus serratus maleCDSF-serratus_M_contig7007 10239..10715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7007.18212.1prot_F-serratus_M_contig7007.18212.1Fucus serratus malepolypeptideF-serratus_M_contig7007 10239..10715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7007.18212.1

>prot_F-serratus_M_contig7007.18212.1 ID=prot_F-serratus_M_contig7007.18212.1|Name=mRNA_F-serratus_M_contig7007.18212.1|organism=Fucus serratus male|type=polypeptide|length=159bp
EARRNLELHYKAKGAREIIRLSHEINGKTMEPGSDPFKFMMEVDRLAGDL
HRLGDKSVTKLRKCVIIVSGLSADFKMECRILENNRDGLNRAEIERVVGS
QYNRLHRQQQDSKVLSASRGTIAANREKGKNRRLYNKFDGKCFNCGKKGH
RAVDCRSAK
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mRNA from alignment at F-serratus_M_contig7007:10239..10715-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7007.18212.1 ID=mRNA_F-serratus_M_contig7007.18212.1|Name=mRNA_F-serratus_M_contig7007.18212.1|organism=Fucus serratus male|type=mRNA|length=477bp|location=Sequence derived from alignment at F-serratus_M_contig7007:10239..10715- (Fucus serratus male)
GAAGCGCGGCGAAACCTTGAACTTCACTATAAAGCAAAAGGAGCTAGAGA
AATTATTCGCCTGTCCCATGAAATCAACGGAAAAACAATGGAACCCGGCA
GTGACCCATTTAAGTTTATGATGGAAGTTGACAGGCTGGCAGGAGACCTT
CACCGTTTGGGTGACAAATCAGTAACAAAACTCAGAAAGTGCGTGATCAT
CGTCTCTGGCCTGTCTGCTGATTTCAAAATGGAATGTCGCATACTTGAAA
ATAACCGTGATGGTCTCAACAGGGCAGAGATTGAACGTGTTGTAGGTAGT
CAGTACAACAGACTTCACAGGCAGCAACAGGACTCAAAGGTATTGTCAGC
ATCAAGGGGCACCATCGCGGCAAATCGAGAAAAGGGGAAGAACAGAAGAC
TCTACAACAAGTTCGATGGTAAATGCTTCAATTGCGGGAAGAAAGGTCAC
CGCGCTGTAGACTGCAGGAGCGCGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7007:10239..10715-

>mRNA_F-serratus_M_contig7007.18212.1 ID=mRNA_F-serratus_M_contig7007.18212.1|Name=mRNA_F-serratus_M_contig7007.18212.1|organism=Fucus serratus male|type=CDS|length=954bp|location=Sequence derived from alignment at F-serratus_M_contig7007:10239..10715- (Fucus serratus male)
GAAGCGCGGCGAAACCTTGAACTTCACTATAAAGCAAAAGGAGCTAGAGA
AATTATTCGCCTGTCCCATGAAATCAACGGAAAAACAATGGAACCCGGCA
GTGACCCATTTAAGTTTATGATGGAAGTTGACAGGCTGGCAGGAGACCTT
CACCGTTTGGGTGACAAATCAGTAACAAAACTCAGAAAGTGCGTGATCAT
CGTCTCTGGCCTGTCTGCTGATTTCAAAATGGAATGTCGCATACTTGAAA
ATAACCGTGATGGTCTCAACAGGGCAGAGATTGAACGTGTTGTAGGTAGT
CAGTACAACAGACTTCACAGGCAGCAACAGGACTCAAAGGTATTGTCAGC
ATCAAGGGGCACCATCGCGGCAAATCGAGAAAAGGGGAAGAACAGAAGAC
TCTACAACAAGTTCGATGGTAAATGCTTCAATTGCGGGAAGAAAGGTCAC
CGCGCTGTAGACTGCAGGAGCGCGAAGGAAGCGCGGCGAAACCTTGAACT
TCACTATAAAGCAAAAGGAGCTAGAGAAATTATTCGCCTGTCCCATGAAA
TCAACGGAAAAACAATGGAACCCGGCAGTGACCCATTTAAGTTTATGATG
GAAGTTGACAGGCTGGCAGGAGACCTTCACCGTTTGGGTGACAAATCAGT
AACAAAACTCAGAAAGTGCGTGATCATCGTCTCTGGCCTGTCTGCTGATT
TCAAAATGGAATGTCGCATACTTGAAAATAACCGTGATGGTCTCAACAGG
GCAGAGATTGAACGTGTTGTAGGTAGTCAGTACAACAGACTTCACAGGCA
GCAACAGGACTCAAAGGTATTGTCAGCATCAAGGGGCACCATCGCGGCAA
ATCGAGAAAAGGGGAAGAACAGAAGACTCTACAACAAGTTCGATGGTAAA
TGCTTCAATTGCGGGAAGAAAGGTCACCGCGCTGTAGACTGCAGGAGCGC
GAAG
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