mRNA_F-serratus_M_contig700.18209.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig700.18209.1
Unique NamemRNA_F-serratus_M_contig700.18209.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig700.18209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig700contigF-serratus_M_contig700:277724..278297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig700.18209.1prot_F-serratus_M_contig700.18209.1Fucus serratus malepolypeptideF-serratus_M_contig700 277844..278170 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932157.3904142-UTR-F-serratus_M_contig700:277723..2778431622932157.3904142-UTR-F-serratus_M_contig700:277723..277843Fucus serratus maleUTRF-serratus_M_contig700 277724..277843 +
1690964175.0420504-UTR-F-serratus_M_contig700:277723..2778431690964175.0420504-UTR-F-serratus_M_contig700:277723..277843Fucus serratus maleUTRF-serratus_M_contig700 277724..277843 +
1622932157.429969-UTR-F-serratus_M_contig700:278170..2782971622932157.429969-UTR-F-serratus_M_contig700:278170..278297Fucus serratus maleUTRF-serratus_M_contig700 278171..278297 +
1690964175.0739958-UTR-F-serratus_M_contig700:278170..2782971690964175.0739958-UTR-F-serratus_M_contig700:278170..278297Fucus serratus maleUTRF-serratus_M_contig700 278171..278297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932157.4052906-CDS-F-serratus_M_contig700:277843..2781701622932157.4052906-CDS-F-serratus_M_contig700:277843..278170Fucus serratus maleCDSF-serratus_M_contig700 277844..278170 +
1690964175.0575616-CDS-F-serratus_M_contig700:277843..2781701690964175.0575616-CDS-F-serratus_M_contig700:277843..278170Fucus serratus maleCDSF-serratus_M_contig700 277844..278170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig700.18209.1

>prot_F-serratus_M_contig700.18209.1 ID=prot_F-serratus_M_contig700.18209.1|Name=mRNA_F-serratus_M_contig700.18209.1|organism=Fucus serratus male|type=polypeptide|length=109bp
MPFSSSASIVGRIHCNASPSTPVWGLRLLVRDDSMGGTLPSMASFRSAGT
VGPSKLADLASAPPSSRSSSGSTSCVSSPRSDNVPCVSTSSSEIASCHSC
SCCSCPNS*
back to top

mRNA from alignment at F-serratus_M_contig700:277724..278297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig700.18209.1 ID=mRNA_F-serratus_M_contig700.18209.1|Name=mRNA_F-serratus_M_contig700.18209.1|organism=Fucus serratus male|type=mRNA|length=574bp|location=Sequence derived from alignment at F-serratus_M_contig700:277724..278297+ (Fucus serratus male)
TTCCGCCATTCGTCCCATTCGTGCGATTCCATCGCCTGTCGCCGATTCCT
CGGTTCTGATACATCTAGCGTCGCTTGCAAAGCCATCTGACCTCCGCCGT
CACATGATAACACATCCTCCATGCCGTTTTCTTCTTCCGCCTCAATCGTC
GGCAGGATACACTGCAACGCTTCCCCCTCCACACCGGTGTGGGGTCTCCG
ACTCCTGGTACGCGATGACAGTATGGGCGGTACATTGCCGTCGATGGCGA
GTTTCCGGAGCGCGGGTACGGTCGGTCCCTCCAAACTTGCTGACCTAGCT
TCCGCTCCCCCTTCCTCACGCTCGTCTTCCGGAAGCACTTCCTGCGTATC
CTCTCCAAGATCTGATAACGTCCCCTGCGTCTCCACTTCGAGTTCCGAAA
TCGCCTCCTGCCACTCGTGCTCGTGTTGTTCATGTCCTAACTCTTGAACG
TTGAGCTGCGGGGTACCTCTCTCAACAATGATGTCCCCTCCCGCCGGCTT
CTTGCCGCGGTCGTCACTGCCAGTGCCGTCACTCCCTGTCTTTTTAGGCC
CATCCATCCACTGAACGGCCTGCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig700:277724..278297+

>mRNA_F-serratus_M_contig700.18209.1 ID=mRNA_F-serratus_M_contig700.18209.1|Name=mRNA_F-serratus_M_contig700.18209.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig700:277724..278297+ (Fucus serratus male)
ATGCCGTTTTCTTCTTCCGCCTCAATCGTCGGCAGGATACACTGCAACGC
TTCCCCCTCCACACCGGTGTGGGGTCTCCGACTCCTGGTACGCGATGACA
GTATGGGCGGTACATTGCCGTCGATGGCGAGTTTCCGGAGCGCGGGTACG
GTCGGTCCCTCCAAACTTGCTGACCTAGCTTCCGCTCCCCCTTCCTCACG
CTCGTCTTCCGGAAGCACTTCCTGCGTATCCTCTCCAAGATCTGATAACG
TCCCCTGCGTCTCCACTTCGAGTTCCGAAATCGCCTCCTGCCACTCGTGC
TCGTGTTGTTCATGTCCTAACTCTTGAATGCCGTTTTCTTCTTCCGCCTC
AATCGTCGGCAGGATACACTGCAACGCTTCCCCCTCCACACCGGTGTGGG
GTCTCCGACTCCTGGTACGCGATGACAGTATGGGCGGTACATTGCCGTCG
ATGGCGAGTTTCCGGAGCGCGGGTACGGTCGGTCCCTCCAAACTTGCTGA
CCTAGCTTCCGCTCCCCCTTCCTCACGCTCGTCTTCCGGAAGCACTTCCT
GCGTATCCTCTCCAAGATCTGATAACGTCCCCTGCGTCTCCACTTCGAGT
TCCGAAATCGCCTCCTGCCACTCGTGCTCGTGTTGTTCATGTCCTAACTC
TTGA
back to top