mRNA_F-serratus_M_contig70.18204.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig70.18204.1 vs. uniprot
Match: D7FYN0_ECTSI (Rubredoxin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYN0_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.400e-55 Identity = 93/145 (64.14%), Postives = 107/145 (73.79%), Query Frame = 3
Query: 3 GFVTVPRMSPSGAFSLRSAPDRKLVGTPQSGRLASRTAAK--ISSLSMATKTTKAEAVTNNFWEGEWVCADCGYIYDQDDCGGLYLEQQQRGFVCPQCRGPRRRFAKKVGNKVGITQDGGDAPILLFSFLGLAVTVAFGFWFAQQ 431
GFV P G F+ R+A ++ + S R +A+ + + MA K AE T +FWEGEWVCADCGYIYD DDCGGLYLE+Q+RGFVCPQCRGPRRRFAKKVGN+VGITQDGGDAPILLFSFLGL TVAFG+WFA Q
Sbjct: 18 GFVPAPAAFSKGQFASRAAASSQVARSSISPRTGVSSASNPGVGVMMMAAK---AEEATRSFWEGEWVCADCGYIYDIDDCGGLYLEEQKRGFVCPQCRGPRRRFAKKVGNQVGITQDGGDAPILLFSFLGLWATVAFGYWFAGQ 159
BLAST of mRNA_F-serratus_M_contig70.18204.1 vs. uniprot
Match: A0A836CCB5_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCB5_9STRA) HSP 1 Score: 174 bits (440), Expect = 5.210e-51 Identity = 75/89 (84.27%), Postives = 82/89 (92.13%), Query Frame = 3
Query: 165 AVTNNFWEGEWVCADCGYIYDQDDCGGLYLEQQQRGFVCPQCRGPRRRFAKKVGNKVGITQDGGDAPILLFSFLGLAVTVAFGFWFAQQ 431
A + +WEGEWVCADCGYIYD+DDCGGLY EQQ++GFVCPQCRGPRRRFAKKVG+KVGITQDGGDA ILLFSFLG A TVAFGFWF+QQ
Sbjct: 53 AEASGYWEGEWVCADCGYIYDRDDCGGLYFEQQKKGFVCPQCRGPRRRFAKKVGDKVGITQDGGDAGILLFSFLGFAATVAFGFWFSQQ 141
BLAST of mRNA_F-serratus_M_contig70.18204.1 vs. uniprot
Match: A0A6V1XC11_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XC11_HETAK) HSP 1 Score: 150 bits (380), Expect = 6.890e-42 Identity = 70/111 (63.06%), Postives = 80/111 (72.07%), Query Frame = 3
Query: 114 AAKISSLSMATKTTKAEAVTNNFWEGEWVCADCGYIYDQDDCGGLYLEQQQRGFVCPQCRGPRRRFAKKVGNKVGITQDGGDAPILLFSFLGLAVTVAFGFWFAQQ*EAPF 446
A K ++LSMA A +WEGEW+CADCGYIYD+DDCGG Y E Q++GF CPQC GPRRRFAKKVG+KVG T DGGD ILLFS+ GLA+TV FG W E PF
Sbjct: 46 ARKQTALSMA-------AEAKEYWEGEWICADCGYIYDRDDCGGTYFEDQRKGFKCPQCAGPRRRFAKKVGDKVGTTLDGGDGQILLFSYGGLALTVLFGIWAINDFELPF 149
BLAST of mRNA_F-serratus_M_contig70.18204.1 vs. uniprot
Match: A0A6U4H457_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4H457_9STRA) HSP 1 Score: 147 bits (372), Expect = 8.770e-41 Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 3
Query: 177 NFWEGEWVCADCGYIYDQDDCGGLYLEQQQRGFVCPQCRGPRRRFAKKVGNKVGITQDGGDAPILLFSFLGLAVTVAFGFWFAQQ 431
+FW+G+WVCADCGYIYD+ +C GLY E+Q RGF CPQCRGPRRR+AKKVG++VG+T DGGDAPILLFS+ GL V FGFW+ Q
Sbjct: 57 DFWQGDWVCADCGYIYDRGECNGLYFEEQPRGFRCPQCRGPRRRYAKKVGDRVGLTLDGGDAPILLFSYGGLIAVVVFGFWYIQN 141
BLAST of mRNA_F-serratus_M_contig70.18204.1 vs. uniprot
Match: B8BU96_THAPS (Rubredoxin-like domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BU96_THAPS) HSP 1 Score: 137 bits (346), Expect = 8.340e-37 Identity = 57/90 (63.33%), Postives = 69/90 (76.67%), Query Frame = 3
Query: 162 EAVTNNFWEGEWVCADCGYIYDQDDCGGLYLEQQQRGFVCPQCRGPRRRFAKKVGNKVGITQDGGDAPILLFSFLGLAVTVAFGFWFAQQ 431
EA+ +W+GEWVC DCGYIY++ +C G+Y E+Q GF CPQC GPRRR+AKKVG++VG T DGGDAPILLFSF GL T+ FG W Q
Sbjct: 59 EALAAKYWQGEWVCKDCGYIYNRAECAGMYFEEQGAGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILLFSFGGLIATIVFGVWAVQN 148
BLAST of mRNA_F-serratus_M_contig70.18204.1 vs. uniprot
Match: A0A1Z5KJZ7_FISSO (Rubredoxin-like domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJZ7_FISSO) HSP 1 Score: 137 bits (344), Expect = 9.050e-37 Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 3
Query: 162 EAVTNNFWEGEWVCADCGYIYDQDDCGGLYLEQQQRGFVCPQCRGPRRRFAKKVGNKVGITQDGGDAPILLFSFLGLAVTVAFGFW 419
E V + +W+GEWVC DCGYIY++ +C G+Y E+Q GF CPQC GPRRR+AKKVG++VG T DGGDAPILLFSF G+ T+AFG W
Sbjct: 39 EEVNSQYWQGEWVCKDCGYIYNRAECAGMYFEEQGPGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILLFSFGGVIATIAFGIW 124
BLAST of mRNA_F-serratus_M_contig70.18204.1 vs. uniprot
Match: A0A7S0Y7F5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7F5_9STRA) HSP 1 Score: 137 bits (345), Expect = 1.210e-36 Identity = 56/80 (70.00%), Postives = 68/80 (85.00%), Query Frame = 3
Query: 180 FWEGEWVCADCGYIYDQDDCGGLYLEQQQRGFVCPQCRGPRRRFAKKVGNKVGITQDGGDAPILLFSFLGLAVTVAFGFW 419
+WEGEWVC DCGYIY +++C GLY E+Q GF CPQC GPRRR+AKKVG++VG T DGGDAPIL+FSF G+A+T+AFG W
Sbjct: 66 YWEGEWVCKDCGYIYQRNECAGLYFEEQGVGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILIFSFGGVALTIAFGIW 145
BLAST of mRNA_F-serratus_M_contig70.18204.1 vs. uniprot
Match: A0A7S2SV90_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV90_9STRA) HSP 1 Score: 137 bits (344), Expect = 2.170e-36 Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 3
Query: 165 AVTNNFWEGEWVCADCGYIYDQDDCGGLYLEQQQRGFVCPQCRGPRRRFAKKVGNKVGITQDGGDAPILLFSFLGLAVTVAFGFWFA 425
A FW GEWVCADCGYIYD + GG++ E+Q RGF CPQC GPRRR+AKK+G+ VG+T DGGD PILLFSFLG+ VT A GF+F+
Sbjct: 69 AEEKGFWAGEWVCADCGYIYDPELFGGIFFEEQTRGFKCPQCSGPRRRYAKKIGDTVGVTLDGGDGPILLFSFLGIIVTFALGFYFS 155
BLAST of mRNA_F-serratus_M_contig70.18204.1 vs. uniprot
Match: K0SZD0_THAOC (Rubredoxin-like domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZD0_THAOC) HSP 1 Score: 136 bits (342), Expect = 2.920e-36 Identity = 57/90 (63.33%), Postives = 69/90 (76.67%), Query Frame = 3
Query: 162 EAVTNNFWEGEWVCADCGYIYDQDDCGGLYLEQQQRGFVCPQCRGPRRRFAKKVGNKVGITQDGGDAPILLFSFLGLAVTVAFGFWFAQQ 431
EA +W+GEWVC DCGYIY++ +C +Y E+Q GF CPQC GPRRR+AKKVG++VG T DGGDAPIL+FSF GLA T+AFG W Q
Sbjct: 55 EAKAAMYWQGEWVCKDCGYIYNRAECANMYFEEQGAGFRCPQCSGPRRRYAKKVGDRVGTTLDGGDAPILIFSFGGLAATIAFGVWAVQN 144
BLAST of mRNA_F-serratus_M_contig70.18204.1 vs. uniprot
Match: A0A7S2BFA2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BFA2_9STRA) HSP 1 Score: 135 bits (341), Expect = 4.240e-36 Identity = 68/123 (55.28%), Postives = 85/123 (69.11%), Query Frame = 3
Query: 75 VGTPQSGRLAS----RTAAKISSLSMATKTTKAEAVT---NNFWEGEWVCADCGYIYDQDDCGGLYLEQQQRGFVCPQCRGPRRRFAKKVGNKVGITQDGGDAPILLFSFLGLAVTVAFGFWF 422
V TP + LAS R AA+ S + MA ++ K A N++WEGEW+CADCGYIYD GGL+ E+Q +GF CPQC GPRRR+AKKVG+ VG+T DGGD PIL SFLG+ +T A G +F
Sbjct: 21 VTTPGARSLASPVLARRAARASPMMMARRSKKEMAAVQAENSYWEGEWICADCGYIYDSSLFGGLFFEEQTKGFKCPQCSGPRRRYAKKVGDTVGVTLDGGDGPILAASFLGIVITFALGAYF 143 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig70.18204.1 >prot_F-serratus_M_contig70.18204.1 ID=prot_F-serratus_M_contig70.18204.1|Name=mRNA_F-serratus_M_contig70.18204.1|organism=Fucus serratus male|type=polypeptide|length=137bp MSPSGAFSLRSAPDRKLVGTPQSGRLASRTAAKISSLSMATKTTKAEAVTback to top mRNA from alignment at F-serratus_M_contig70:864017..866849- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig70.18204.1 ID=mRNA_F-serratus_M_contig70.18204.1|Name=mRNA_F-serratus_M_contig70.18204.1|organism=Fucus serratus male|type=mRNA|length=2833bp|location=Sequence derived from alignment at F-serratus_M_contig70:864017..866849- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig70:864017..866849- >mRNA_F-serratus_M_contig70.18204.1 ID=mRNA_F-serratus_M_contig70.18204.1|Name=mRNA_F-serratus_M_contig70.18204.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig70:864017..866849- (Fucus serratus male)back to top |