mRNA_F-serratus_M_contig70.18202.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig70.18202.1 vs. uniprot
Match: D8LJJ2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ2_ECTSI) HSP 1 Score: 413 bits (1061), Expect = 1.610e-125 Identity = 244/510 (47.84%), Postives = 326/510 (63.92%), Query Frame = 1
Query: 361 LRQVAMNWDPLKHGQLFGFDCVSLDPTQFKELFRRNFGAVLGPQDLGLLVSMYDKRRERRLDSADFLKDFCQMGREGRQAQARHSQETTREKQLKQEAWIKKCADRMTRLVEVTVGEPSEKDVETAMTKMSEAAARYDTSRDTSFRPLYKG-LVRPTTFREQLRMAFGLRLTKRELAGLISGLDLRRGDMIDTVQFVYRFNTIGSERRAGTKIGENIKSDKIRQWKRKKEEAFSAKIRKSLRIKVKWDFTEEELKRAKTIIAKAASTYDKGRLGTDIQSIAQTTMDPVTFRTQLLQCFQVRLGPGELGAIFTLFDKDRNMRIDGTELVHEFCRLGREERARKLVETDQRRDRFDQRLSKLFKRREDRLLEHTVTKVIWPALPHDPYDEDYVAAGVPASTTXXXXXXXSPASRCAGQLGMSDPRENPRRRSENKGGETGRR--CLRRRQPELSDSTAEFLDQIAKAEMSIRAMKYGGGRRRHYAPNET---GRVSCQ----PRGFRTATAS 1860
+++VA NWDP K L GFDCVSL PT+FKELFRRNFG +L P+DLG+LVSMYDK+ E R DSA+FLKDF Q+GR+ R+ QAR + R+ +KQ +++ ADR +++ EV V + +E V +A+ K + A RY SRD FR L +G ++ PTTFREQLR FGLRLT+ E+ GLIS DL R M+D +F +RF+T+ + A +++ R+ R++EEA K+R+ + KV W F+E+ELKR +IA AASTYDK RLG DI IAQ MDP FR QLL F+VRLGPGELGA+FT FDKD + IDGTEL+HEF R+GREERA+ L E +++R R D + +R EDR +E T KV+WP L +DP+D+DY +T+ ++ + +G + R + N+ G+ R RRR+P++S STAEFL QI K EM+IRAM G RR++ N G SC P G RTATA+
Sbjct: 1 MKRVATNWDPQKQTPLLGFDCVSLGPTEFKELFRRNFGVLLHPRDLGVLVSMYDKQGEGRADSAEFLKDFWQIGRDERELQARKRMQMVRKLNIKQNERLRERADRRSKVKEVAVEKHTEDHVRSAIAKTTRVAERYVVSRDQGFRQLERGGMMGPTTFREQLRTIFGLRLTRAEVGGLISAFDLHRDGMVDAKEFAFRFHTLARDSHAAKVAEGQARNETARRRNREQEEALLTKLREQSKCKVNWSFSEDELKRGLKMIAVAASTYDKARLGADINRIAQMKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMGREERAKNLAEAERQRHRADLKEKNFRQRLEDRFIEQTAAKVVWPRLMYDPFDDDYNMDDHDPATSVG-------STTLSKSVGDNKSRGRSNNDNNNEPGDVSREPSARRRRRPKISASTAEFLAQIRKEEMTIRAMTCRGRRRKNGDSNHRNGGGDDSCDLFSYPGGPRTATAA 503
BLAST of mRNA_F-serratus_M_contig70.18202.1 vs. uniprot
Match: A0A6H5KBB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB4_9PHAE) HSP 1 Score: 147 bits (370), Expect = 2.630e-34 Identity = 103/243 (42.39%), Postives = 135/243 (55.56%), Query Frame = 1
Query: 1210 MDPVTFRTQLLQCFQVRLGPGELGAIFTLFDKDRNMRIDGTE-----------------LVHEFCRLGREERARKLVETDQRRDRFDQRLSKLFKRREDRLLEHTVTKVIWPALPHDPYDEDYVAAGVPASTTXXXXXXXSPASRCAGQLGMSDPRENPRRRSENKGGETGRR--CLRRRQPELSDSTAEFLDQIAKAEMSIRAMKYGGGRRRHYAPNET---GRVSCQ----PRGFRTATAS 1860
MDP FR QLL F+VRLGPGELGA+FT FDKD + IDGTE L+HEF R+GREERA+ L E +++R R D + +R EDR +E T KV WP L +DP+DEDY +T+ ++ + +G + R + + N+ G+ R RRR+P++S STAEFL QI K EM+IRAM G RR++ N G SC P G RTATA+
Sbjct: 3 MDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTETFTLAADTYTREHARTKLMHEFFRMGREERAKNLAEAERQRHRADTKEKNFRRRLEDRFIEQTAAKVEWPRLMYDPFDEDYNMDDHDPATSVR-------STSLSKSVGDNKSRGSSNNDNNNETGDVSREPSARRRRRPKISASTAEFLAQIRKEEMTIRAMTCRGRRRKNGDSNRHNGGGDDSCDLFSYPGGPRTATAA 238
BLAST of mRNA_F-serratus_M_contig70.18202.1 vs. uniprot
Match: A0A7S3YGZ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGZ4_HETAK) HSP 1 Score: 136 bits (343), Expect = 5.370e-30 Identity = 108/359 (30.08%), Postives = 184/359 (51.25%), Query Frame = 1
Query: 322 IANLPEAEPVIDRLRQVAMNWDPLKHGQLFGFDCVSLDPTQFKELFRRNFGAVLGPQDLGLLVSMYDKRRERRLDSADFLKDFCQMGREGRQAQAR-----HSQETTREKQLKQEAWIKKCADRMTRLVEVTVGEP-SEKDVETAMTKMSEAAARYDTSRDTSFRPLYK--GLVRPTTFREQLRMAFGLRLTKRELAGLISGLDLRRGDMIDTVQFVYRFNTIGSERRAGTKIGENIKSDKIRQWKRKKEEAFSAKIRKSLRIKVKWDFTEEELKRAKTIIAKAASTYDKGRLGTDIQSIAQTTMDPVTFRTQLLQCFQVRLGPGELGAIFTLFDKDRNMRIDGTELVHEFCRLGREER 1374
I LPE V R+ ++AMN+DP + G L GFD SL P++FKE RRNFG L P++LG +++ +DK + +D +FL +F ++GRE R+ Q H++ K+++ E A + T L++V V + +EK+ +A+ K++ A +D ++ + G + P TF++ L + +T EL L++ D +D +F++RF IG + RA + ++R+ +R+ K + + + ++L+ A +AK A YD+ R G ++ S + TMD F+ QL + V P EL A+ FD D + +D E + F R+GR E+
Sbjct: 45 IGVLPEIIHVKRRIGELAMNFDPQRSGVLRGFDGASLGPSEFKEQMRRNFGMYLTPEELGAMITWFDKDGDGTVDCGEFLSEFFRLGRELRRKQKLQLDRVHAKHIEDRKKIEAEK-----ARKRTELLQVAVKKDFTEKERASALAKVARVAKHFDRRKNPHAMKAFVEGGAMDPATFKQTLWRNLSITVTAGELGALMAEFDQDGDGTVDADEFIFRFFQIGRDARADAHRAKLDLDHRLREKERQFTRGVEEKYARLAEARPREPRPGKDLESAIAKVAKVARLYDRDR-GFNLMSF-RGTMDLTKFKEQL-KVLGVLCTPAELTALMREFDHDGDGTVDCAEFLAMFFRIGRREK 395
BLAST of mRNA_F-serratus_M_contig70.18202.1 vs. uniprot
Match: D8LDZ3_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ3_ECTSI) HSP 1 Score: 100 bits (250), Expect = 1.080e-17 Identity = 95/333 (28.53%), Postives = 145/333 (43.54%), Query Frame = 1
Query: 406 LFGFDCVSLDPTQFKELFRRNFGAVLGPQDLGLLVSMYDKRRERRLDSADFLKDFCQMGREGRQAQARHSQETTREKQLKQEAWIKKCADRMTRLVEVTVGEP-SEKDVETAMTKMSEAAARYDTSRDT--SFRPLYKGLVRPTTFREQLRMAFGLRLTKRELAGLISGLDLRRGDMIDTVQFVYRFNTIGSERRAGTKIGENIKSDKIRQWKRKKEEAFSAKIRKSLRIKVKWDFTEEELKRAKTIIAKAASTYDKGR---LGTDIQSIAQTTMDPVTFRTQLLQCFQVRLGPGELGAIFTLFDKDRNMRIDGTELVHEFCRLGREERARKL 1386
L F ++ P F+E R+ F L P +LG ++ +DK + +D +F K F +MG + R + + R + + SE+ ++AM K+++AAARYD + + S + P FREQL+ AFG++LT EL I D I +F+ F +G E ++ T + K+ + +KV F E + + A IA AAS YDK LG D M P F+ QL + F ++L P ELGA+ FDKD + ++ E + F R+G E R R L
Sbjct: 99 LGAFQGHNMPPHVFREQLRKVFNIKLTPAELGGVMHRFDKDDDGTVDVVEFTKMFFKMGFDERNRRTKXXXXXXXXXXXXXXXXXXXXXXXXXRKNALKINRSYSERHYQSAMAKITKAAARYDKNHPSAVSLDAFDGAQMEPHVFREQLKRAFGIQLTPPELGAAIHAFDKDGDGSISCPEFLRTFFRLGFEVKSETSTRRRTRDRKMARRXXXXXXXXXXXXXXXAALKVSESFDEHDKESAMAKIADAASRYDKNHPSCLGLD--GFEGALMPPHIFKEQLKRVFGLKLSPSELGAMMQEFDKDGDGTVNCAEFLLTFFRVGFESRNRAL 429
BLAST of mRNA_F-serratus_M_contig70.18202.1 vs. uniprot
Match: A0A6H5JI75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI75_9PHAE) HSP 1 Score: 100 bits (248), Expect = 1.900e-17 Identity = 101/337 (29.97%), Postives = 148/337 (43.92%), Query Frame = 1
Query: 406 LFGFDCVSLDPTQFKELFRRNFGAVLGPQDLGLLVSMYDKRRERRLDSADFLKDFCQMGREGRQAQARHSQETTREKQLKQEAWIKKCADRMTRLVEVTVGEPSEKDVETAMTKMSEAAARYDTSRDT--SFRPLYKGLVRPTTFREQLRMAFGLRLTKRELAGLISGLDLRRGDMIDTVQFVYRFNTIGSERRAGTKIGENIKSDKIRQWKRKK-----EEAFSAKIRKSLRIKVKWDFTEEELKRAKTIIAKAASTYDKGR---LGTDIQSIAQTTMDPVTFRTQLLQCFQVRLGPGELGAIFTLFDKDRNMRIDGTELVHEFCRLGREERARKL 1386
L F + P F+E R+ F L P +LG ++ +DK + +D +F K F +MG + R + + +E EA +K A ++ R SE+ ++AM K+++AAARYD + + S + P FREQL+ AFG+RLT EL I D I +F+ F +G + A + K +KV F E + + A IA AAS YDK LG D M P F+ QL + F ++L PGELGA+ FDKD + ++ E + F R+G E R R L
Sbjct: 407 LGAFQGHKMPPHVFREQLRKVFNIKLTPAELGGVMHRFDKDDDGTVDVVEFTKMFFKMGFDERNRRTKKKREA--------EAEERKNALKINRSY-------SERHYQSAMAKITKAAARYDKNHPSAVSLDAFDGAQMEPHVFREQLKRAFGIRLTPPELGAAIHAFDKDGDGSISCPEFLRTFFRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRQPTPAAVPKDA-LKVSESFDEHDKESAMAKIADAASRYDKNHPSCLGLD--GFEGALMPPHIFKEQLKRVFGLKLSPGELGAMMQEFDKDGDGMVNCAEFLLTFFRVGFESRNRAL 725 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig70.18202.1 >prot_F-serratus_M_contig70.18202.1 ID=prot_F-serratus_M_contig70.18202.1|Name=mRNA_F-serratus_M_contig70.18202.1|organism=Fucus serratus male|type=polypeptide|length=743bp MERRRSSDFSLPVLHETDNGALSDGGGQVGNLLDAEDDDGEKYDKNDGSLback to top mRNA from alignment at F-serratus_M_contig70:825391..835776+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig70.18202.1 ID=mRNA_F-serratus_M_contig70.18202.1|Name=mRNA_F-serratus_M_contig70.18202.1|organism=Fucus serratus male|type=mRNA|length=10386bp|location=Sequence derived from alignment at F-serratus_M_contig70:825391..835776+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig70:825391..835776+ >mRNA_F-serratus_M_contig70.18202.1 ID=mRNA_F-serratus_M_contig70.18202.1|Name=mRNA_F-serratus_M_contig70.18202.1|organism=Fucus serratus male|type=CDS|length=4458bp|location=Sequence derived from alignment at F-serratus_M_contig70:825391..835776+ (Fucus serratus male)back to top |