mRNA_F-serratus_M_contig70.18181.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18181.1
Unique NamemRNA_F-serratus_M_contig70.18181.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:415427..416035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size609
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18181.1prot_F-serratus_M_contig70.18181.1Fucus serratus malepolypeptideF-serratus_M_contig70 415521..415763 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932153.8934605-UTR-F-serratus_M_contig70:415426..4155201622932153.8934605-UTR-F-serratus_M_contig70:415426..415520Fucus serratus maleUTRF-serratus_M_contig70 415427..415520 +
1690964173.2847419-UTR-F-serratus_M_contig70:415426..4155201690964173.2847419-UTR-F-serratus_M_contig70:415426..415520Fucus serratus maleUTRF-serratus_M_contig70 415427..415520 +
1622932153.9318385-UTR-F-serratus_M_contig70:415763..4160351622932153.9318385-UTR-F-serratus_M_contig70:415763..416035Fucus serratus maleUTRF-serratus_M_contig70 415764..416035 +
1690964173.3068144-UTR-F-serratus_M_contig70:415763..4160351690964173.3068144-UTR-F-serratus_M_contig70:415763..416035Fucus serratus maleUTRF-serratus_M_contig70 415764..416035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932153.9089332-CDS-F-serratus_M_contig70:415520..4157631622932153.9089332-CDS-F-serratus_M_contig70:415520..415763Fucus serratus maleCDSF-serratus_M_contig70 415521..415763 +
1690964173.2964232-CDS-F-serratus_M_contig70:415520..4157631690964173.2964232-CDS-F-serratus_M_contig70:415520..415763Fucus serratus maleCDSF-serratus_M_contig70 415521..415763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18181.1

>prot_F-serratus_M_contig70.18181.1 ID=prot_F-serratus_M_contig70.18181.1|Name=mRNA_F-serratus_M_contig70.18181.1|organism=Fucus serratus male|type=polypeptide|length=81bp
MMIRLPSSWRKPFTEALLRAMWPYSSRGPRRQGLRPRSCSSARVLRGGET
CEEYWPEGFQAARLAVSLSVGRSFPSSSRR*
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mRNA from alignment at F-serratus_M_contig70:415427..416035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18181.1 ID=mRNA_F-serratus_M_contig70.18181.1|Name=mRNA_F-serratus_M_contig70.18181.1|organism=Fucus serratus male|type=mRNA|length=609bp|location=Sequence derived from alignment at F-serratus_M_contig70:415427..416035+ (Fucus serratus male)
TACGGATGAGAAGGTCGTGACAACTTCGGTATCGACGGCAACAGCTTGGG
AAGACTGGGCGGACGACTCTTCCGGCTCGGAGGTTCACTCTCAGATGATG
ATTAGGCTTCCGTCGTCCTGGCGCAAGCCGTTTACCGAGGCGCTCCTGCG
AGCCATGTGGCCCTACAGCAGCCGCGGACCCCGGCGGCAAGGCCTGCGTC
CGCGGTCGTGCAGCAGCGCTCGAGTGCTAAGAGGGGGAGAGACTTGCGAG
GAATACTGGCCGGAAGGATTCCAGGCGGCGCGGCTTGCCGTGTCCTTGTC
GGTCGGCCGCTCTTTCCCCTCTTCCAGTCGACGGTGACCAGCCGGATCGA
GGAAGGCGAGGGACTCAAAGCAAACGCAGTGTCAGCAGCAATGAACCAGC
GACAGGAAGGAGAAAGCGGAGAGAGGTACGAGATTCCCTTCGAGATTGTG
GAGGACCTGGTGCTGCAGAGACCGCTCCCGCCGCCGCCTGCAGCCGAGGC
AATCGCCGACACTCTCGCCTGATGCGACCGTCGCCGGATAGCGCAGATAA
TGACGACGACAACTTCAAAAGACGGTAGCAATGCCGGTAGCAAGAAGGGC
GGGAGCCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig70:415427..416035+

>mRNA_F-serratus_M_contig70.18181.1 ID=mRNA_F-serratus_M_contig70.18181.1|Name=mRNA_F-serratus_M_contig70.18181.1|organism=Fucus serratus male|type=CDS|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig70:415427..416035+ (Fucus serratus male)
ATGATGATTAGGCTTCCGTCGTCCTGGCGCAAGCCGTTTACCGAGGCGCT
CCTGCGAGCCATGTGGCCCTACAGCAGCCGCGGACCCCGGCGGCAAGGCC
TGCGTCCGCGGTCGTGCAGCAGCGCTCGAGTGCTAAGAGGGGGAGAGACT
TGCGAGGAATACTGGCCGGAAGGATTCCAGGCGGCGCGGCTTGCCGTGTC
CTTGTCGGTCGGCCGCTCTTTCCCCTCTTCCAGTCGACGGTGAATGATGA
TTAGGCTTCCGTCGTCCTGGCGCAAGCCGTTTACCGAGGCGCTCCTGCGA
GCCATGTGGCCCTACAGCAGCCGCGGACCCCGGCGGCAAGGCCTGCGTCC
GCGGTCGTGCAGCAGCGCTCGAGTGCTAAGAGGGGGAGAGACTTGCGAGG
AATACTGGCCGGAAGGATTCCAGGCGGCGCGGCTTGCCGTGTCCTTGTCG
GTCGGCCGCTCTTTCCCCTCTTCCAGTCGACGGTGA
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