mRNA_F-serratus_M_contig70.18171.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18171.1
Unique NamemRNA_F-serratus_M_contig70.18171.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig70.18171.1 vs. uniprot
Match: D8LRZ3_ECTSI (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ3_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 5.250e-35
Identity = 100/241 (41.49%), Postives = 123/241 (51.04%), Query Frame = 2 
Query:  449 PEDVGRFRECAWLGKYCSAQRYHAQTRVAIDNFVVNIDNDRARWTKWNCLAVELDTEMDIVRGIMEEIAQIASFIGNPSPAAERRSSGGIAFTTGEEGDLATNVISRERRSGPPPHRDAV----GVVNLGDSYSRATTDDDALVADLGFESFQVRVDSDPSQPSDPDVWPLQTPKPLRGALQAVPEAASAAVESSSY--------GSVSRSKRESAAAGAAALAIEKARQSLPAWARLATP 1135
            PE + +FRE A  G Y  AQRYH Q   AI++ V  +D D +R  KW  LA ELD E+ IV+ I++E+A+  S  G+  P  ERRSSGG+AFT GE GDLA  V SRE +      R ++       N+G +  R          DLG  S  +  D  P    DPDVWP  TP P RG        A+A     S         G V+ SK       AAALA + ARQ LPAWAR  TP
Sbjct:   14 PETLTKFREHALKGNYALAQRYHEQGTAAIESLVAGMDGDDSRRAKWTGLATELDAELKIVKDIVKELARTVSLAGSSGPTEERRSSGGVAFTAGEPGDLAVRVSSRENQHQQHHSRGSIIDGRNRQNIGGAVDRL---------DLGLGSLAIDPDG-PVATDDPDVWPPPTPDPSRGGAVLHQAGAAAGGGPGSGLSPGPRFGGGVASSKLVRREVAAAALASDMARQQLPAWARAGTP 244
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRZ3_ECTSI5.250e-3541.49Katanin p60 ATPase-containing subunit A1 n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:129066..133116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue9.1e-17
Seed eggNOG ortholog2880.D8LRZ3
Preferred nameKATNA1
KEGG koko:K07767
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule-severing ATPase activity
EggNOG OGsCOG0554@1,KOG0738@2759
EC3.6.4.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Exons5
Model size1252
Cds size633
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18171.1prot_F-serratus_M_contig70.18171.1Fucus serratus malepolypeptideF-serratus_M_contig70 129066..130277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932150.8507288-CDS-F-serratus_M_contig70:129065..1295811622932150.8507288-CDS-F-serratus_M_contig70:129065..129581Fucus serratus maleCDSF-serratus_M_contig70 129066..129581 -
1690964172.2128685-CDS-F-serratus_M_contig70:129065..1295811690964172.2128685-CDS-F-serratus_M_contig70:129065..129581Fucus serratus maleCDSF-serratus_M_contig70 129066..129581 -
1622932150.8733685-CDS-F-serratus_M_contig70:129766..1298681622932150.8733685-CDS-F-serratus_M_contig70:129766..129868Fucus serratus maleCDSF-serratus_M_contig70 129767..129868 -
1690964172.2276218-CDS-F-serratus_M_contig70:129766..1298681690964172.2276218-CDS-F-serratus_M_contig70:129766..129868Fucus serratus maleCDSF-serratus_M_contig70 129767..129868 -
1622932150.887959-CDS-F-serratus_M_contig70:130262..1302771622932150.887959-CDS-F-serratus_M_contig70:130262..130277Fucus serratus maleCDSF-serratus_M_contig70 130263..130277 -
1690964172.237146-CDS-F-serratus_M_contig70:130262..1302771690964172.237146-CDS-F-serratus_M_contig70:130262..130277Fucus serratus maleCDSF-serratus_M_contig70 130263..130277 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932150.9004712-UTR-F-serratus_M_contig70:130277..1303731622932150.9004712-UTR-F-serratus_M_contig70:130277..130373Fucus serratus maleUTRF-serratus_M_contig70 130278..130373 -
1690964172.2465472-UTR-F-serratus_M_contig70:130277..1303731690964172.2465472-UTR-F-serratus_M_contig70:130277..130373Fucus serratus maleUTRF-serratus_M_contig70 130278..130373 -
1622932150.9145172-UTR-F-serratus_M_contig70:131598..1317481622932150.9145172-UTR-F-serratus_M_contig70:131598..131748Fucus serratus maleUTRF-serratus_M_contig70 131599..131748 -
1690964172.2636325-UTR-F-serratus_M_contig70:131598..1317481690964172.2636325-UTR-F-serratus_M_contig70:131598..131748Fucus serratus maleUTRF-serratus_M_contig70 131599..131748 -
1622932151.5285943-UTR-F-serratus_M_contig70:132743..1331161622932151.5285943-UTR-F-serratus_M_contig70:132743..133116Fucus serratus maleUTRF-serratus_M_contig70 132744..133116 -
1690964172.2733061-UTR-F-serratus_M_contig70:132743..1331161690964172.2733061-UTR-F-serratus_M_contig70:132743..133116Fucus serratus maleUTRF-serratus_M_contig70 132744..133116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18171.1

>prot_F-serratus_M_contig70.18171.1 ID=prot_F-serratus_M_contig70.18171.1|Name=mRNA_F-serratus_M_contig70.18171.1|organism=Fucus serratus male|type=polypeptide|length=211bp
MDIVRGIMEEIAQIASFIGNPSPAAERRSSGGIAFTTGEEGDLATNVISR
ERRSGPPPHRDAVGVVNLGDSYSRATTDDDALVADLGFESFQVRVDSDPS
QPSDPDVWPLQTPKPLRGALQAVPEAASAAVESSSYGSVSRSKRESAAAG
AAALAIEKARQSLPAWARLATPPPAGEVVHRRSCGGGGGVGSGGGNGLAA
AKGGASRVDAA
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mRNA from alignment at F-serratus_M_contig70:129066..133116-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18171.1 ID=mRNA_F-serratus_M_contig70.18171.1|Name=mRNA_F-serratus_M_contig70.18171.1|organism=Fucus serratus male|type=mRNA|length=4051bp|location=Sequence derived from alignment at F-serratus_M_contig70:129066..133116- (Fucus serratus male)
GTTGACTTCCTGGATGCGTACACTTTTACGATAAAGCACAGATCCAAGAA
CGCGAACGACAACGCCGACGTCTTGTCGCGCCTCCATTTTCCAGCCATCG
CAGAAGATCTTCAGCCCACGGGTATCGCCTGACCGACCCTTCGGACCTCG
ATGCCTACTTCGTAGGTGCCAGCGGAATTCACCCCTTCAAGCCTTCGAAC
ATCGTCGGACTCAAGTTTGGGTGGACTGGCCAACGCCTTGGGGGAACTGG
AAAACGCTTTGGGTGGACTGACGGCGGCCCCCGACGATGTTATTTTTTGT
CGGGGGGGGAGGGAGTAGAGCGTTCCTGGAAAACGGAGCAAGATTTATAA
CAAGGTGGAGCGCCATCGGGCGGGTGCATATATATTTTTGTATACTGTAC
TTGAATTGATGAAAACTGGGGGTGGGGGGATTCTTCCTCTTTACTGCAGC
CTTAAGCCATACTAATCCTGTGACACGATCCAAGTCTTCGCGGCTTCCCA
TTTTCATTGCCTCTTTCCCAACGTTTTTCAAGAGGATCTTCAAATTGCCA
CCCATCGCCAGCCGTCTTGAAGAAAAATGTACTAGCCAATGATGTCAGAT
GGGTACATGTCGGGGCCACATCTTGGGTCGCAACTGAGCTTGTATCCTGG
CGGCACATATACCTCACCGGCTGACCGCGCTTGCGACCTTTTTATCATCT
GCACAAGATACGTTCGATATTTTGCGTTAAATAGGGAATGAAAATGGGAA
GCCGCGAAGACTTGGAACGTCTCAACGTTAGTATGGTTTAAGGCTGTATG
TGATAAGTTACCTATTTCACCACAGGGTAAAAGTCAACTGACGATTACGT
ATCGGTAATCAGTCCTTATAACACTCTCCACCCACATAATTTGACTATCC
GGCGATCAAGGGATCTATCCGGAGATCAAGCGGGACTAGTTAAATTCGAT
AAGGTTTTGAGTGTAGGGGCATACGTACGGAGTACCACCGTTATTTCATC
TCCAACCGATATTCTGCCCAGGAATTCGGTGAGGTAAAAGCAATTCGCTA
AGCGGGATTCGAACCCGGGTCCCAGTCGACGCCAGTGTGATAAGTTACCT
ATTTCACCACAGGGTAAAAGTCAATTGACGATTACGTATCGGTAATCAGT
CCTTATAATATGTACCTGGTAAAAGAGGAAATATCCCCCTATCCCCGGTT
TTCTAAAGAAAAATATTTTCATCAGTTCAAGTATACGGTTACACATTTGA
AAACAAAAATATATATGCGGTACAAATGAATAATTTTGTAAAGAAAAATC
TGAATGCACCTAGACCTTCTGACCCGCCCTCCGACTGCAGCCGCTACAGC
GTGCTCCTCCGTCCCCAGATAATACACTGCAAATTGCTTTAAGAAGGCAA
TAGAAATGCCACGGCCGGCGTTTCCTCCTGATGTGGTGTGCATCCCGAAG
ACGTTGGCAGATTCCGAGAATGCGCCTGGCTGGGGAAGTACTGCTCGGCT
CAAAGATATCACGCGCAGGTGCAAACTCCCAAAACTCTTGGCCTCGAGAG
CACGAAATGGTTGCCAGCGAGTATAAATCTGGCACAGTATTGGGGAGACG
CTTATCGTCTATTATCATCGAACCTTTTTCTGGCTGAACCTTATGTTGTT
GAGGCGTGTCGTGCTGAACCGTCCTTTGCTGATTGATCCTTCTCGGCCCC
CTACGGTCATCACGCGTCTCTTCTTGGAAAAGGAATCTCGGAACACAGCC
CAGTGGCACGTAACTGCTATCTGTGAACTGTAGTACTGTACGTATAAGCC
TTCCAGTGGTAGCCGAACACTCTGGACCCTCCAAACTAGTCGCATGAAAT
CTGGAGGGTCTCGCGTCAAGTACCTGGTAAGCTTCTGAGTGGATTCAGCA
GCCAGCACAAACACTCCACGCGGCGTCTGCGTTTTAGTTGGATTTCCCAA
TGGTAATATTAATACTAGTTTTTAAAAAATCGTACGAAACTGATTACAGA
AGCTTTTAAATTTTTTTTCGTACTGCTTGTAGGAAATGGGTGAATATTTA
ATATTTACAACAATGCTGGCTGAAGTCTGAATTTGAAACGGTTTTCCCGT
CAGTGCGGCTAGTCTGGTCGTTCTTGAGTCGCAACGAAAACCTTCCGCGG
CAGGGCACATAAATCGTTACATTTTGTGCAATGAACGGGCGTAAATAGTA
GGCGAAATTTGACTTCAAATGTAGGCATAAATCTGAGCAGATGCTGCTGC
TTTTCCAGCGCAACAACGTTCTACTGTTATATTTAGTGAGGGAAGTCTAC
CAAAGGAATCGAGGTGAATACGGGTTCGTGTACTTGGATTATGAAGATTC
TTCAACGTTATCCTCTGTTTTTGTCTTTTTTCAATGCTGTATTGGTTTCG
TCTTCAATGTTTGATGATGTTTTGTCTCGCTGTTTTTATGGTGTCCCTGC
ATGGCGATTAATGTAAGTGTACAGTATAACGGTGGGTTTCTCCCCGATAT
TATACTGTTGACCCAATGGCACCACCATAGGGGAACCCGTTTAAATGCCA
TGAAGAGGTTTTGTATTTGCAGCCTTTGAGCCGACCTGAACGTTTTGATA
TTTTTTTCCCCTGACTGGGGGATGCTCAGAAGGTCTAGGTGCGTTCTGTA
TTTTCTTCAAACATAGAGCTAAATAGCTCGTTATATGCATCAGAAGCTCT
GCAGACAGCATTGTCGTAATGGTCCATCACCCTACCTCTACAGACAAGGG
TAGCCATCGACAACTTCGTGGTCAACATCGACAACGACCGAGCGAGATGG
ACCAAGTGGAATTGCCTCGCCGTGGAGTTGGACACGGAGATGGATATTGT
GAGGGTGAGTCTCAACTGAAAGATCAAGACAAAAAAAAATAGAACGATAG
CTCCGGCTCCAGCGCAGGCAGGATACAAAAGAACAGAACAGCGATCTATA
TTAATAGAGGAGGCACTCGTGGTACTTCCGACGTGTCGGGGCGAATTTAT
GTTTTGTTTATCAGTGGCGCTTCTACTGTTGTTCAAGGTTTGGAACGTGA
AACAAGCGACGGAAGCAAGCGGAGTCTTCAGAACTCGGCTCTCCATGAGC
ACTTGATCATTACATAGATTTTGATGAATGGAATCTGTTTAAGGTGCACT
ACTTTTCCAAGATTTTTTGTTTTGTCTTGTCTTCGCTATACAAGGGAACA
CCTTCTGCTGTAATCGTTGCTGGTATGGTCACGCTCTTTGATGTGCAGGG
TATCATGGAGGAAATAGCCCAGATAGCCTCGTTCATCGGAAATCCTAGCC
CCGCTGCGGAGCGTCGGTCGTCCGGGGGAATCGCTTTCACCACCGGCGAG
GTGAGAATTGCGCGGCTTTTCTTGGCGTTGTTTACGCTATCTGCTCGCTC
GCACGCGTCTCGTACTGCAACAACTATATAGAATGTTGTAATCCTTCAAC
AAAATGCTGAGGTTGCACGTTGTATCTGAACAATCTTCTCGGCCCACTTC
ACCACCTCCTCCTTCCCCCCCCCATTCCTTGGCAGGAGGGTGATCTCGCC
ACAAACGTCATCAGCCGTGAACGGCGGAGTGGACCGCCTCCTCATCGAGA
CGCTGTCGGAGTTGTCAATCTCGGTGACAGCTACAGCCGTGCGACGACAG
ATGATGACGCCTTAGTCGCAGACCTCGGCTTTGAATCTTTTCAAGTACGA
GTGGATTCCGACCCGTCGCAACCCTCCGACCCGGACGTCTGGCCGCTGCA
GACACCGAAACCTCTCCGTGGCGCCCTGCAAGCGGTACCGGAAGCGGCAT
CGGCGGCTGTAGAGTCTTCTTCGTACGGTTCTGTTTCGAGGTCCAAGAGA
GAGAGTGCGGCGGCGGGGGCGGCTGCCCTTGCTATAGAGAAGGCACGTCA
GAGCCTCCCGGCGTGGGCGAGGCTTGCGACTCCTCCCCCGGCCGGGGAGG
TGGTTCACCGGCGTAGCTGCGGAGGTGGAGGCGGTGTCGGAAGTGGTGGT
GGCAACGGCTTAGCGGCGGCGAAAGGTGGGGCAAGCCGGGTAGACGCTGC
C
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Coding sequence (CDS) from alignment at F-serratus_M_contig70:129066..133116-

>mRNA_F-serratus_M_contig70.18171.1 ID=mRNA_F-serratus_M_contig70.18171.1|Name=mRNA_F-serratus_M_contig70.18171.1|organism=Fucus serratus male|type=CDS|length=1266bp|location=Sequence derived from alignment at F-serratus_M_contig70:129066..133116- (Fucus serratus male)
ATGGATATTGTGAGGATGGATATTGTGAGGGGTATCATGGAGGAAATAGC
CCAGATAGCCTCGTTCATCGGAAATCCTAGCCCCGCTGCGGAGCGTCGGT
CGTCCGGGGGAATCGCTTTCACCACCGGCGAGGGTATCATGGAGGAAATA
GCCCAGATAGCCTCGTTCATCGGAAATCCTAGCCCCGCTGCGGAGCGTCG
GTCGTCCGGGGGAATCGCTTTCACCACCGGCGAGGAGGGTGATCTCGCCA
CAAACGTCATCAGCCGTGAACGGCGGAGTGGACCGCCTCCTCATCGAGAC
GCTGTCGGAGTTGTCAATCTCGGTGACAGCTACAGCCGTGCGACGACAGA
TGATGACGCCTTAGTCGCAGACCTCGGCTTTGAATCTTTTCAAGTACGAG
TGGATTCCGACCCGTCGCAACCCTCCGACCCGGACGTCTGGCCGCTGCAG
ACACCGAAACCTCTCCGTGGCGCCCTGCAAGCGGTACCGGAAGCGGCATC
GGCGGCTGTAGAGTCTTCTTCGTACGGTTCTGTTTCGAGGTCCAAGAGAG
AGAGTGCGGCGGCGGGGGCGGCTGCCCTTGCTATAGAGAAGGCACGTCAG
AGCCTCCCGGCGTGGGCGAGGCTTGCGACTCCTCCCCCGGCCGGGGAGGT
GGTTCACCGGCGTAGCTGCGGAGGTGGAGGCGGTGTCGGAAGTGGTGGTG
GCAACGGCTTAGCGGCGGCGAAAGGTGGGGCAAGCCGGGTAGACGCTGCC
GAGGGTGATCTCGCCACAAACGTCATCAGCCGTGAACGGCGGAGTGGACC
GCCTCCTCATCGAGACGCTGTCGGAGTTGTCAATCTCGGTGACAGCTACA
GCCGTGCGACGACAGATGATGACGCCTTAGTCGCAGACCTCGGCTTTGAA
TCTTTTCAAGTACGAGTGGATTCCGACCCGTCGCAACCCTCCGACCCGGA
CGTCTGGCCGCTGCAGACACCGAAACCTCTCCGTGGCGCCCTGCAAGCGG
TACCGGAAGCGGCATCGGCGGCTGTAGAGTCTTCTTCGTACGGTTCTGTT
TCGAGGTCCAAGAGAGAGAGTGCGGCGGCGGGGGCGGCTGCCCTTGCTAT
AGAGAAGGCACGTCAGAGCCTCCCGGCGTGGGCGAGGCTTGCGACTCCTC
CCCCGGCCGGGGAGGTGGTTCACCGGCGTAGCTGCGGAGGTGGAGGCGGT
GTCGGAAGTGGTGGTGGCAACGGCTTAGCGGCGGCGAAAGGTGGGGCAAG
CCGGGTAGACGCTGCC
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