mRNA_F-serratus_M_contig70.18184.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18184.1
Unique NamemRNA_F-serratus_M_contig70.18184.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: A0A6H5K2D2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.350e-18
Identity = 90/152 (59.21%), Postives = 99/152 (65.13%), Query Frame = -2
Query:  131 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITA-------EAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRRCVRVCEREFVRISNILPPDCA---LFRLTRTQLVFSSLFTLDALS 556
            +  STI FDEIDSLAG RGSDGEH+ASRR KTEL+VQMDG+T           XXXXXXXXXXXXXXXXXXXXXXXXXX        TVIVLA TNT W+LDEALRR  RV  R   RI   LP +     LFR+    +       LDAL+
Sbjct:  112 YAPSTIFFDEIDSLAGSRGSDGEHEASRRVKTELMVQMDGVTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVIVLAATNTPWSLDEALRR--RVQRRLEKRIYIPLPTEVGRKELFRINLGDVEVDDDVDLDALA 261          
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: A0A7S1XMB5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMB5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.960e-17
Identity = 50/101 (49.50%), Postives = 59/101 (58.42%), Query Frame = -2
Query:  257 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSL-KTVIVLATTNTQWNLDEALRR 556
            +  STI FDEID+LAG RG+  EH+ASRR KTEL+VQMDG++  AG                          DG G +  KTVIVLA TN  W+LDEALRR
Sbjct:   61 YAPSTIFFDEIDALAGSRGNANEHEASRRVKTELMVQMDGVSEAAGARDEDG--------------------DGDGGATNKTVIVLAATNMPWDLDEALRR 141          
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: D8LRZ3_ECTSI (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ3_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.740e-16
Identity = 88/152 (57.89%), Postives = 97/152 (63.82%), Query Frame = -2
Query:  131 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITA-------EAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRRCVRVCEREFVRISNILPPDCA---LFRLTRTQLVFSSLFTLDALS 556
            +  STI FDEIDSLAG RGSDGEH+ASRR KTEL+VQMDG+T           XXXXXXXXXXXXXXXXXXXXXXXXXX        TVIVLA TNT W+LDEALRR      R   RI   LP +     LFR+    +       LDAL+
Sbjct:  544 YAPSTIFFDEIDSLAGSRGSDGEHEASRRVKTELMVQMDGVTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVIVLAATNTPWSLDEALRR------RLEKRIYIPLPTEVGRKELFRINLGDVEVDDDVDLDALA 689          
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: A0A7S2SSB0_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSB0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.650e-16
Identity = 46/100 (46.00%), Postives = 58/100 (58.00%), Query Frame = -2
Query:  257 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRR 556
            +  STI FDEID++AG RGS+GEH+ASRR KTEL+VQMDG+++ A                              G   +TVIVLA TN  W+LD+ALRR
Sbjct:  358 YAPSTIFFDEIDAIAGARGSEGEHEASRRVKTELMVQMDGVSSAADTEDGEQENEEEN-----------------GPGKRTVIVLAATNRPWDLDDALRR 440          
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: A0A0M0JI99_9EUKA (Katanin p60 ATPase-containing subunit a-like 1-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JI99_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 5.760e-16
Identity = 62/145 (42.76%), Postives = 76/145 (52.41%), Query Frame = -2
Query:  128 STILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGI----TAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRRCVRVCEREFVRISNILPPDC-ALFRLTRTQLVFSSLFTLDALSS 547
            STI  DEIDSLAG RG   EH+ASRR K+ELLVQMDGI    TA+ G                          +G G  LKTV VLA TN  W+LDEALRR  R+ +R ++ +    P D  AL  +   +L       LDAL++
Sbjct:   31 STIFIDEIDSLAGQRGGASEHEASRRVKSELLVQMDGISTSSTADGGAAE-----------------------EGAG--LKTVTVLAATNFPWDLDEALRR--RLEKRIYIPLPE--PGDIRALLDINLKELTLEEGVDLDALAA 146          
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: F0Y1I1_AURAN (AAA domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1I1_AURAN)

HSP 1 Score: 84.0 bits (206), Expect = 7.790e-16
Identity = 47/97 (48.45%), Postives = 54/97 (55.67%), Query Frame = -2
Query:  257 STILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRR 547
            ST+ FDEIDSLAG RG   EH+ASRR KTEL+VQMDG+   +G                           G   + +TVIVLA TNT W LDEALRR
Sbjct:  116 STVFFDEIDSLAGQRGGANEHEASRRVKTELMVQMDGVAGGSGDAPEDA---------------------GAEAAPRTVIVLAATNTPWELDEALRR 191          
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: T1ELR9_HELRO (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1ELR9_HELRO)

HSP 1 Score: 82.8 bits (203), Expect = 5.100e-15
Identity = 47/114 (41.23%), Postives = 62/114 (54.39%), Query Frame = -2
Query:  215 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRRCVRVCEREFVRISN 556
            +  STI FDEIDS+ G RG+D EH+ASRR KTELL+QMDG+T   G                              +  K V+VLA TN  W++DEALRR  R+ +R ++ + N
Sbjct:  310 YAPSTIFFDEIDSICGRRGADNEHEASRRVKTELLIQMDGVTGATGLDE---------------------------DPTKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPN 394          
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: A0A4D9D8G0_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8G0_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.180e-15
Identity = 58/145 (40.00%), Postives = 71/145 (48.97%), Query Frame = -2
Query:  131 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRRCVRVCEREFVRISNILPPDCA---LFRLTRTQLVFSSLFTLDALS 556
            +  ST+ FDEIDS+AG RG  GEH+ASRR KTEL+VQMDG+ A+A                                  KTVIVLA TN  W+LD+ALRR      R   RI   LP +     LFR+    +       LDAL+
Sbjct:  446 YAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGV-ADASATTSVDDNEEGAADEEERPGS------------KTVIVLAATNMPWDLDDALRR------RMEKRIYISLPTEEGRKELFRINMRDIEVGDDMDLDALA 571          
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: A0A7S3YD60_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD60_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 2.470e-14
Identity = 58/100 (58.00%), Postives = 64/100 (64.00%), Query Frame = -2
Query:  257 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRR 556
            +  STI FDEIDSLAG RGS  EH+ASRR KTEL+VQMDG+T  +  XXXXXXXXXXXX                      VIVLA TN  W+LDEALRR
Sbjct:  104 YAPSTIFFDEIDSLAGSRGSSSEHEASRRVKTELMVQMDGVTETSADXXXXXXXXXXXX----------------------VIVLAATNMPWDLDEALRR 181          
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: W7U5R9_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5R9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.630e-14
Identity = 57/145 (39.31%), Postives = 70/145 (48.28%), Query Frame = -2
Query:  131 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRRCVRVCEREFVRISNILPPDCA---LFRLTRTQLVFSSLFTLDALS 556
            +  ST+ FDEIDS+AG RG  GEH+ASRR KTEL+VQMDG+ A+A                                  KTVIVLA TN  W+LD+ALRR      R   RI   LP +     LFR+    +       LD L+
Sbjct:  446 YAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGV-ADASATTSVDDNEEGAVDEEERPGS------------KTVIVLAATNMPWDLDDALRR------RMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLA 571          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2D2_9PHAE4.350e-1859.21AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1XMB5_9STRA2.960e-1749.50Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
D8LRZ3_ECTSI2.740e-1657.89Katanin p60 ATPase-containing subunit A1 n=1 Tax=E... [more]
A0A7S2SSB0_9STRA4.650e-1646.00Katanin p60 ATPase-containing subunit A1 n=1 Tax=R... [more]
A0A0M0JI99_9EUKA5.760e-1642.76Katanin p60 ATPase-containing subunit a-like 1-lik... [more]
F0Y1I1_AURAN7.790e-1648.45AAA domain-containing protein (Fragment) n=1 Tax=A... [more]
T1ELR9_HELRO5.100e-1541.23Katanin p60 ATPase-containing subunit A1 n=1 Tax=H... [more]
A0A4D9D8G0_9STRA8.180e-1540.00Katanin p60 ATPase-containing subunit A1 n=1 Tax=N... [more]
A0A7S3YD60_HETAK2.470e-1458.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7U5R9_9STRA2.630e-1439.31Katanin p60 ATPase-containing subunit A1 n=1 Tax=N... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:423352..423947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size492
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932149.712103-UTR-F-serratus_M_contig70:423351..4234551622932149.712103-UTR-F-serratus_M_contig70:423351..423455Fucus serratus maleUTRF-serratus_M_contig70 423352..423455 +
1690964171.943458-UTR-F-serratus_M_contig70:423351..4234551690964171.943458-UTR-F-serratus_M_contig70:423351..423455Fucus serratus maleUTRF-serratus_M_contig70 423352..423455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932149.7272644-CDS-F-serratus_M_contig70:423455..4239471622932149.7272644-CDS-F-serratus_M_contig70:423455..423947Fucus serratus maleCDSF-serratus_M_contig70 423456..423947 +
1690964171.9543097-CDS-F-serratus_M_contig70:423455..4239471690964171.9543097-CDS-F-serratus_M_contig70:423455..423947Fucus serratus maleCDSF-serratus_M_contig70 423456..423947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18184.1prot_F-serratus_M_contig70.18184.1Fucus serratus malepolypeptideF-serratus_M_contig70 423456..423947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18184.1

>prot_F-serratus_M_contig70.18184.1 ID=prot_F-serratus_M_contig70.18184.1|Name=mRNA_F-serratus_M_contig70.18184.1|organism=Fucus serratus male|type=polypeptide|length=164bp
MNALICWPEDKASRVNKEEKTSCVRVNRKRAQSGGKMFEIRTNSLSHTRT
HLRRASSRFHCVLVVARTITVFKLFPHPSPPPPSSAPAEAFSSSGDRRWL
AAPPPPASAVIPSICTSNSVFARRLALCSPSLPRHPARESISSNNIVLSG
NPKFLTIRRRLLVL
back to top

mRNA from alignment at F-serratus_M_contig70:423352..423947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18184.1 ID=mRNA_F-serratus_M_contig70.18184.1|Name=mRNA_F-serratus_M_contig70.18184.1|organism=Fucus serratus male|type=mRNA|length=596bp|location=Sequence derived from alignment at F-serratus_M_contig70:423352..423947+ (Fucus serratus male)
GGGGTAGCGCGAGGTCGCCACGGTCGGGCCACAAAAGGGTCGCAAGGGGC ATATCAACGACGACAACGACAACGATGCTGGAAGAAACGCCCTGCTCTTT TTGAATGAATGCCCTGATCTGTTGGCCCGAGGATAAGGCATCAAGGGTAA ATAAAGAGGAGAAGACTAGCTGCGTGCGTGTCAATCGGAAGAGAGCACAG TCGGGAGGCAAAATGTTCGAAATACGCACAAACTCTCTCTCACACACACG CACACACCTTCGGAGAGCCTCGTCGAGATTCCACTGTGTGTTGGTCGTGG CGAGGACGATCACTGTCTTCAAGCTGTTCCCGCATCCGTCACCACCACCA CCATCGTCAGCCCCGGCCGAAGCTTTTTCGTCCTCGGGGGACAGGAGATG GCTTGCGGCACCCCCGCCCCCGGCCTCGGCGGTGATACCGTCCATCTGTA CGAGCAACTCCGTTTTCGCGCGGCGGCTCGCCTTGTGTTCGCCATCGCTT CCGCGGCACCCCGCCAGGGAGTCAATCTCATCAAATAATATTGTGCTGTC GGGGAATCCGAAGTTCTTGACCATCCGTCGTCGTCTCCTCGTTCTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig70:423352..423947+

>mRNA_F-serratus_M_contig70.18184.1 ID=mRNA_F-serratus_M_contig70.18184.1|Name=mRNA_F-serratus_M_contig70.18184.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig70:423352..423947+ (Fucus serratus male)
ATGAATGCCCTGATCTGTTGGCCCGAGGATAAGGCATCAAGGGTAAATAA
AGAGGAGAAGACTAGCTGCGTGCGTGTCAATCGGAAGAGAGCACAGTCGG
GAGGCAAAATGTTCGAAATACGCACAAACTCTCTCTCACACACACGCACA
CACCTTCGGAGAGCCTCGTCGAGATTCCACTGTGTGTTGGTCGTGGCGAG
GACGATCACTGTCTTCAAGCTGTTCCCGCATCCGTCACCACCACCACCAT
CGTCAGCCCCGGCCGAAGCTTTTTCGTCCTCGGGGGACAGGAGATGGCTT
GCGGCACCCCCGCCCCCGGCCTCGGCGGTGATACCGTCCATCTGTACGAG
CAACTCCGTTTTCGCGCGGCGGCTCGCCTTGTGTTCGCCATCGCTTCCGC
GGCACCCCGCCAGGGAGTCAATCTCATCAAATAATATTGTGCTGTCGGGG
AATCCGAAGTTCTTGACCATCCGTCGTCGTCTCCTCGTTCTCATGAATGC
CCTGATCTGTTGGCCCGAGGATAAGGCATCAAGGGTAAATAAAGAGGAGA
AGACTAGCTGCGTGCGTGTCAATCGGAAGAGAGCACAGTCGGGAGGCAAA
ATGTTCGAAATACGCACAAACTCTCTCTCACACACACGCACACACCTTCG
GAGAGCCTCGTCGAGATTCCACTGTGTGTTGGTCGTGGCGAGGACGATCA
CTGTCTTCAAGCTGTTCCCGCATCCGTCACCACCACCACCATCGTCAGCC
CCGGCCGAAGCTTTTTCGTCCTCGGGGGACAGGAGATGGCTTGCGGCACC
CCCGCCCCCGGCCTCGGCGGTGATACCGTCCATCTGTACGAGCAACTCCG
TTTTCGCGCGGCGGCTCGCCTTGTGTTCGCCATCGCTTCCGCGGCACCCC
GCCAGGGAGTCAATCTCATCAAATAATATTGTGCTGTCGGGGAATCCGAA
GTTCTTGACCATCCGTCGTCGTCTCCTCGTTCTC
back to top