mRNA_F-serratus_M_contig70.18192.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18192.1
Unique NamemRNA_F-serratus_M_contig70.18192.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:582774..585888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1050
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18192.1prot_F-serratus_M_contig70.18192.1Fucus serratus malepolypeptideF-serratus_M_contig70 585179..585761 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932149.280127-UTR-F-serratus_M_contig70:582773..5831021622932149.280127-UTR-F-serratus_M_contig70:582773..583102Fucus serratus maleUTRF-serratus_M_contig70 582774..583102 -
1690964171.722905-UTR-F-serratus_M_contig70:582773..5831021690964171.722905-UTR-F-serratus_M_contig70:582773..583102Fucus serratus maleUTRF-serratus_M_contig70 582774..583102 -
1622932149.2975318-UTR-F-serratus_M_contig70:584367..5844041622932149.2975318-UTR-F-serratus_M_contig70:584367..584404Fucus serratus maleUTRF-serratus_M_contig70 584368..584404 -
1690964171.7359827-UTR-F-serratus_M_contig70:584367..5844041690964171.7359827-UTR-F-serratus_M_contig70:584367..584404Fucus serratus maleUTRF-serratus_M_contig70 584368..584404 -
1622932149.315993-UTR-F-serratus_M_contig70:585170..5851781622932149.315993-UTR-F-serratus_M_contig70:585170..585178Fucus serratus maleUTRF-serratus_M_contig70 585171..585178 -
1690964171.7500026-UTR-F-serratus_M_contig70:585170..5851781690964171.7500026-UTR-F-serratus_M_contig70:585170..585178Fucus serratus maleUTRF-serratus_M_contig70 585171..585178 -
1622932149.3705056-UTR-F-serratus_M_contig70:585761..5858881622932149.3705056-UTR-F-serratus_M_contig70:585761..585888Fucus serratus maleUTRF-serratus_M_contig70 585762..585888 -
1690964171.788115-UTR-F-serratus_M_contig70:585761..5858881690964171.788115-UTR-F-serratus_M_contig70:585761..585888Fucus serratus maleUTRF-serratus_M_contig70 585762..585888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932149.3311253-CDS-F-serratus_M_contig70:585178..5852991622932149.3311253-CDS-F-serratus_M_contig70:585178..585299Fucus serratus maleCDSF-serratus_M_contig70 585179..585299 -
1690964171.7632015-CDS-F-serratus_M_contig70:585178..5852991690964171.7632015-CDS-F-serratus_M_contig70:585178..585299Fucus serratus maleCDSF-serratus_M_contig70 585179..585299 -
1622932149.3517556-CDS-F-serratus_M_contig70:585333..5857611622932149.3517556-CDS-F-serratus_M_contig70:585333..585761Fucus serratus maleCDSF-serratus_M_contig70 585334..585761 -
1690964171.7728906-CDS-F-serratus_M_contig70:585333..5857611690964171.7728906-CDS-F-serratus_M_contig70:585333..585761Fucus serratus maleCDSF-serratus_M_contig70 585334..585761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18192.1

>prot_F-serratus_M_contig70.18192.1 ID=prot_F-serratus_M_contig70.18192.1|Name=mRNA_F-serratus_M_contig70.18192.1|organism=Fucus serratus male|type=polypeptide|length=183bp
MAPDRGCWPLQEGPGSVATGEGRPSPVPTSPGSAQPHGSTRRPCPLCQDR
PMVPCRSSPTETVPGPYENLRISRLRHVNSQFPANIRREIKEVATRVQAA
FEEYGSNHCCVARAIKLATASDIRLSASLRTDVFRLRDLLNRAVPPANPP
PRGAKHLLRRDLDAARTHPAAGVILKGVSHLG*
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mRNA from alignment at F-serratus_M_contig70:582774..585888-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18192.1 ID=mRNA_F-serratus_M_contig70.18192.1|Name=mRNA_F-serratus_M_contig70.18192.1|organism=Fucus serratus male|type=mRNA|length=3115bp|location=Sequence derived from alignment at F-serratus_M_contig70:582774..585888- (Fucus serratus male)
AGCGCCAGCACCTCGCATACATGCGATACTTCCGGGGCGACCCACGCCGC
TCCCGACAATCACACGCCACCGAGCGTCCAGTGGCCCCGTCCGCACTGGC
TAGCTCCCATGCCCCGGCTGGACTCGAATGGCGCCAGATCGCGGCTGTTG
GCCCCTGCAGGAGGGACCGGGCTCCGTCGCCACCGGCGAGGGCCGCCCGA
GCCCCGTCCCCACTTCCCCAGGTAGCGCCCAACCCCATGGATCCACCAGA
CGCCCATGTCCACTTTGCCAAGACCGGCCCATGGTCCCTTGTCGCTCCTC
GCCGACAGAAACCGTCCCCGGCCCTTACGAGAACCTACGTATCTCGAGAT
TACGGCACGTAAACAGCCAGTTCCCCGCGAACATCCGCCGGGAGATCAAA
GAAGTGGCCACCCGTGTTCAGGCCGCTTTCGAAGAGTATGGGAGCAACCA
CTGCTGTGTCGCCCGCGCCATCAAGCTGGCCACCGCTTCGGACATCAGGC
TGAGCGCATCGCTTCGCACTGATGTCTTCCGCCTTCGGGACCTCCTCAAC
AGAGCGTACGACTCCCCGTCGGGAGTCGCATGGATCCAGGGTGCCCCCTG
CCAACCCGCCTCCTCGGGGAGCGAAACATCTTCTTCGGCGAGACCTCGAC
GCCGCGAGGACCCATCCAGCGGCCGGGGTAATTCTAAAAGGCGTCTCTCA
CCTCGGATAGCGAGGACCTTTGTGGCTACACCAAATATTATGAGGATTGA
CCTAGGGCTTTGACAGGAACTCACGCGTAATTGTTGATGATGGTTCCTTG
TAGTTGGAATTAGCGTTATGCTTCAAAAGAATGTACAACTCCTTTGGCGA
AACTTCAGAAGTTGCACTTATGGTTTGCACCAGCCTACGAGCTTAGTTCT
ATCCTTGTCTCCTGAAAGCAACGCTAACAAAGAAGGTTCACGGACGTTTG
TGGAATCCACGATCTTTAGCAATTACTACAAGGAACCATCATCAACAATT
ACGCGTGAGTTCCTGTCAAAGCCCTAGGTCAATCCTCATAATATTTGGTG
TAGCCACAAAGGTCCTCGCTATCCGAGGTGAGAGACGCCTTTTTAGAATT
ACCCCGGCCGCTGGATGGGTCCTCGCGGCGTCGAGGTCTCGCCGAAGAAG
ATGTTTCGCTCCCCGAGGAGGCGGGTTGGCAGGGGGCACCCTGGATCCAT
GCGGCTCCCGACGGGGAGTCGTACGCTCTGTTGAGGAGGTCCCGAAGGCG
GAAGACATCAGTGCGAAGCGATGCGCTCAGCCTGATGTCCGAAGCGGTGG
CCAGCTTGGCGCGGGCGACACAGCAGTGGTTGCTCCCATACTCTTCGAAA
GCGGCCTGAACACGGGTGGCCACTTCTTTGATCTCCCGGCGGATGTTCGC
GGGGAACTGGCTGTTTACGTGCCGTAATCTCGAGATACGTAGGTTCTCGT
AAGGGCCGGGGGACGGTTTCTGTCGGCGAGGACCAACCGGAGCCGCGCGG
ACGCTATTTTCGGGACCATAGGCAAGTACCGAAATTCTACCATTCGAGCG
ACGACAGCGATGTCCCTTGTTTTCCCCCGCGTATTTTCCGACACCGCACG
CACTCACGGCGACAGCGCACACGCGTAGCCCCCTCGCGCTGCCGCCCCCG
CTACCAGCACCGTCCCATCAGCCCAGAGTATAATCCAGGCAGCCACCACC
GCAGCCATCGCCGCCGTAGATCACCACCTGGCCACATTAGGATTGCTCCC
GCGACCGGACACTGATCATACATCCGCTACAGTACCCCAGCAGACTGTTG
ATCTCCCTGAAGTACAGTACCCCGTAGAGAGCACCGCCCATATACCGTAC
CCCCTTAATTTTTGCCCCCCCTTAGGCCCCCATAATACAGAAATACCCCA
GCAGGCTGTTAATCCCCCTGAAGTACAGTACCCCGTAGGTAGCACCGCCC
ATATACCATACCAGTACTCCCTTAATTTTTGCCCCCCTTAGGCCCCCACA
GTACAGAAATACCCCAGCAGGCTGTTAATCCCCCTGAAGTACAGTACCCC
GTAGGTAGCACCGCCCATATACCATACTCCCTTCATTTTCGCCCCCCCCT
TAAGTCCCCACAGTGCAGAAGTACCCCAGCAGTCTGTCGATCCCCCTGGC
GTACAGTACCCCCTAGGGAACACCTCCCATGTACCGCACTCCAGAAAAAT
CCCCCCACAGATTGCCATTCCCCCGGATCAGACGAGCGCTATGAACCCTC
CCGCCCACCTTCCCCCCGCGTACAGTACCCCATAGTGAACACTGCTGGTG
TACAGTACCCCGTGGCACACACAACGCGTGTACGGTACCCCCTCACGGCC
CCCGCTGGTGTACCGTACCCCCCCAACGTCCCTCCGAGGATGGCCCCGAC
AGACGAGCGCCCCTTGTATGACGACAGTTCATGCAACAGCTCACAACCAC
CCAACCCTTCGGGCCCCCACCCGACTTCGTTGCCCACGTACAGGCTGCCT
TTCGCACCCTGGACACGCGCAGAATTTCCCGCATTCAATCATTGCAGTTC
CCCCTTCCGCGGACAGAACTGCCGCTACTCAACTCTTGACTCGCTCAATC
CGCGACGCGCTGTCAGGGATCTTTGACGTAGCTGATCCTACCGGGACCGT
GACCATGGACTCCCCCATTTGGATTCCCGGGTGGCATGCACCGCTTCTTA
AGTTGGTCAAAGCGGCTATCATTGCTAACCGCGACGACACTCATGACCTA
CACCACCTCGTCGACGATCTCTTCTTACAATTACAGGAAAGGATGAGCTC
CAGCTCCACCGGTCCAGAAGCGTTTAAGACTCTGCTTACGGACTTCGCCG
ATTACTTTAACCGAGCACCACGTGGAGCCGCGCTCGAGACCCTTCAGCGA
TTTGGAGTCCGTACGGGAACTCCATTCTCTAGTTACCTACGGGCCCTTCA
CGTTGTCGTAGCCAGTACAGTAGAGAAAGGCGGCCCGTTGGCGCCTTCCG
CGACGATGGCCATCGAGCTTATTCAAATACGTACGGCCCAACAGTATCCC
ACGTTGATGCCCACTTTGTTCCCAGGGGATCGAGCGACTAGAGAAAGCCC
GTATGCTTCACTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig70:582774..585888-

>mRNA_F-serratus_M_contig70.18192.1 ID=mRNA_F-serratus_M_contig70.18192.1|Name=mRNA_F-serratus_M_contig70.18192.1|organism=Fucus serratus male|type=CDS|length=1098bp|location=Sequence derived from alignment at F-serratus_M_contig70:582774..585888- (Fucus serratus male)
ATGGCGCCAGATCGCGGCTGTTGGCCCCTGCAGGAGGGACCGGGCTCCGT
CGCCACCGGCGAGGGCCGCCCGAGCCCCGTCCCCACTTCCCCAGGTAGCG
CCCAACCCCATGGATCCACCAGACGCCCATGTCCACTTTGCCAAGACCGG
CCCATGGTCCCTTGTCGCTCCTCGCCGACAGAAACCGTCCCCGGCCCTTA
CGAGAACCTACGTATCTCGAGATTACGGCACGTAAACAGCCAGTTCCCCG
CGAACATCCGCCGGGAGATCAAAGAAGTGGCCACCCGTGTTCAGGCCGCT
TTCGAAGAGTATGGGAGCAACCACTGCTGTGTCGCCCGCGCCATCAAGCT
GGCCACCGCTTCGGACATCAGGCTGAGCGCATCGCTTCGCACTGATGTCT
TCCGCCTTCGGGACCTCCTCAACAGAGCATGGCGCCAGATCGCGGCTGTT
GGCCCCTGCAGGAGGGACCGGGCTCCGTCGCCACCGGCGAGGGCCGCCCG
AGCCCCGTCCCCACTTCCCCAGGTAGCGCCCAACCCCATGGATCCACCAG
ACGCCCATGTCCACTTTGCCAAGACCGGCCCATGGTCCCTTGTCGCTCCT
CGCCGACAGAAACCGTCCCCGGCCCTTACGAGAACCTACGTATCTCGAGA
TTACGGCACGTAAACAGCCAGTTCCCCGCGAACATCCGCCGGGAGATCAA
AGAAGTGGCCACCCGTGTTCAGGCCGCTTTCGAAGAGTATGGGAGCAACC
ACTGCTGTGTCGCCCGCGCCATCAAGCTGGCCACCGCTTCGGACATCAGG
CTGAGCGCATCGCTTCGCACTGATGTCTTCCGCCTTCGGGACCTCCTCAA
CAGAGCGGTGCCCCCTGCCAACCCGCCTCCTCGGGGAGCGAAACATCTTC
TTCGGCGAGACCTCGACGCCGCGAGGACCCATCCAGCGGCCGGGGTAATT
CTAAAAGGCGTCTCTCACCTCGGATAGGGTGCCCCCTGCCAACCCGCCTC
CTCGGGGAGCGAAACATCTTCTTCGGCGAGACCTCGACGCCGCGAGGACC
CATCCAGCGGCCGGGGTAATTCTAAAAGGCGTCTCTCACCTCGGATAG
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