mRNA_F-serratus_M_contig124.1831.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig124.1831.1
Unique NamemRNA_F-serratus_M_contig124.1831.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig124.1831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig124contigF-serratus_M_contig124:627367..631074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size252
Cds size207
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig124.1831.1prot_F-serratus_M_contig124.1831.1Fucus serratus malepolypeptideF-serratus_M_contig124 627367..631029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929162.2874177-CDS-F-serratus_M_contig124:627366..6275461622929162.2874177-CDS-F-serratus_M_contig124:627366..627546Fucus serratus maleCDSF-serratus_M_contig124 627367..627546 +
1690962729.9583793-CDS-F-serratus_M_contig124:627366..6275461690962729.9583793-CDS-F-serratus_M_contig124:627366..627546Fucus serratus maleCDSF-serratus_M_contig124 627367..627546 +
1622929162.2974763-CDS-F-serratus_M_contig124:631002..6310291622929162.2974763-CDS-F-serratus_M_contig124:631002..631029Fucus serratus maleCDSF-serratus_M_contig124 631003..631029 +
1690962729.9695063-CDS-F-serratus_M_contig124:631002..6310291690962729.9695063-CDS-F-serratus_M_contig124:631002..631029Fucus serratus maleCDSF-serratus_M_contig124 631003..631029 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929162.3096325-UTR-F-serratus_M_contig124:631029..6310741622929162.3096325-UTR-F-serratus_M_contig124:631029..631074Fucus serratus maleUTRF-serratus_M_contig124 631030..631074 +
1690962729.9802322-UTR-F-serratus_M_contig124:631029..6310741690962729.9802322-UTR-F-serratus_M_contig124:631029..631074Fucus serratus maleUTRF-serratus_M_contig124 631030..631074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig124.1831.1

>prot_F-serratus_M_contig124.1831.1 ID=prot_F-serratus_M_contig124.1831.1|Name=mRNA_F-serratus_M_contig124.1831.1|organism=Fucus serratus male|type=polypeptide|length=69bp
SSSSLLDWGRCVVRVSIICALFSICAGWALSGGKLARIADMMRTVALPLY
SYSGGSWLKQNLHVYHRC*
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mRNA from alignment at F-serratus_M_contig124:627367..631074+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig124.1831.1 ID=mRNA_F-serratus_M_contig124.1831.1|Name=mRNA_F-serratus_M_contig124.1831.1|organism=Fucus serratus male|type=mRNA|length=3708bp|location=Sequence derived from alignment at F-serratus_M_contig124:627367..631074+ (Fucus serratus male)
TCCTCTTCCTCGCTCCTAGATTGGGGAAGATGTGTTGTTCGCGTTTCTAT
TATTTGCGCATTGTTCTCGATTTGCGCGGGATGGGCTTTGTCCGGTGGGA
AGCTAGCCAGGATCGCTGACATGATGAGGACCGTCGCTCTGCCTCTGTAC
TCGTACAGTGGTGGATCGTGGTTGAAGCAGGTCAGTCATGATGCATATAT
TTGTCGATTTGCGGGGATGTTTTAGGTATTAGCAGTGTCGACGTTAGCTT
GAAGGTGGATGGGGAGGGGAGGAGGTGTAAGATATTGTCGCTGGTCGATG
CTCCCTCTCAGTTCAAGAGCTATTTCGTGCCGATTTAACCTATTTAGTAG
AGCTTCATTGCAACTACTACTACAGGCAGTAACTGCAGTACTGTAGTCGT
ACGTAAAGATAAAAGAACAAAGAAGTTTATAGACTTGTACAGTAGCATTA
GACTACTGCCTACTGTAATAGTTTATAGACTTGGTCGTTCATTCTCCCCC
GCATCAAGAGCTTTCAAACCGTTTTGATTGGTCGGTGCCATTGCTTGCAG
AGTTGCATAACTCTTTGTCGCGATTCGGATCCCTGTTTAAAGAAAAATCC
GAACAGCACCTAGACTTTTTAGCATCCCCGTAGGGGAGGAAATGTCTGTT
GGTCTGAGTAGCAGGTTGTCACCATGATGTGGCTCGTTGACCTTTGTACC
TCTTCGTGACCACGTACCGGATTGGCAACCATAGCGTATATTAGTGGGTG
TGGTTGAGGCCAACAACTCCATACTGCACTGGTGGTTGTTCTCTGAACCG
AGCTTTTGCAGTCCCCAAAGGCACCAATGACTGAACTATTGAGTCTTTCA
CATGTATGACTTGTAGATTTTTTTCATCGAACTAGCAACAATGAACCTTA
GCTATTTATATTTTATATGGCCATAGACTATTACTGTAGTCTTGAACTCT
CAAAGTCAAAACATCTTGTACATTTAGACTCATAGTGTTCCTTGTTTTGG
CTTGGTGTCCCTAAATCGTGATCAATGTAAGTGTATATTAGTATAACGGT
GGGTTTCTCCCCGGTATTATGTTGTTGGCCCTATGTGGCTTAACATTGGG
AACCCATTTAATTTCATGAATATTTGACCCTACAGCCAATGTTCAATGTT
CCCACATATTAGTATTAATAAATATTTTGTAATGTTTTCCCCACAGCCGA
GGGTGGATGCTGGTTTATTAATATTATTATGAATACATATTTAGATGTTT
AGATGCGTTCAGACTTTTCTTTAGACACCACATCCGCCCGGAGGATACGA
GTCCAAGCCTTTTTTTCTTTTTTTATTCTCACACAAGCTGATATAAAAAA
TCCAGCCTGTGGTTACAAGGTAGGAAAACACCATAACACCATCCAGAAGG
CGGAAACGTGCGACGTACTCATCCATACTATTAGTAAGAGAAAACGGCAG
TGGTACAAAAATACTCGGAAACGACACCTCCAAAGAAACAGAAGGAAACA
AGGAAGAAGCACGTGTGGCTGTCAGGACGCATGCGAATCGTAGAACGAGG
AACGATTGAACGAAGGGCCGCGGCTTCAGCGAAAACATAAAGACGAAAAC
GAAGCAAAATAAAACAAACGTGACACCAGAGGAAGACGATATGATTAAAT
GCAAACCAGACGCTCGGAGGACACGACTTCGCGCCACTTGTGGCTAGTCA
ATTATGGCGAGCGAACCAGCACGAGCCCGCTTGCTTTGGGTTATCCTCTC
CTTGGTCCTTCCCGTCACGTTCGGGCATACTAGTGCATGCCTTAGTCCAT
CCCTGGTTTTCTCTGCAGCGATCCATTTCGTTATGAAACGTTCCGCCCCT
TGTTCTACCGTTCTGCGCCATTCCCCCTCGTCCTGGGCTGCAGTCGTCCA
CTGGTCGGCGTTGATTCCGAAAGCTCTGAGGCCGTCCAGGAAACACCCCA
TCCACTCTTTTTCCTAGCCCCCCACACAGCCCGCGCCCCCCACGAACATC
ACGCACTTCGGCAGTCTCGTGCCCCCCATGCGCGCCACAAATCCCGCGAA
CAAGATCCGCCTCCTGCGTATAGTCGCCTTGATGCTCTCACTTTACGTCT
TCATAAGCAGCGTGTCTAGATAGGAAATCGGGTGGTCGGCGCGATTGTTC
TTTCGCCAACCGATGCAGCGAGTCAGGAAGCTGTGGTGGACTCAGCGCAG
CGTGTCGTAGTGGCACGCGCGTAGGCTCCACGTGACGCAGCCGTACAGCA
TTGTCTCGAGTACCTCGGCTCTTAGCATCCAGATTTTGAGCTCGAGGGGA
GCACTCGGTCGGTTGCACAGCTCGAGGGTGCACTTAAGGAAGCTGCACCA
TGCATTGCGTATGCGCCGGTCGACCTCGATGAACAGGTCGGCATTGTGGT
TGACGTTCCCCCCGAGGTATATAAACTCGTTCGTTTGGTTGTACACCCGA
CCCGCTGCCTCTACGCTGAATGTTGCGGTGGACTCCGGCATCCCCTTCGT
GCGTAAACACATGATCTCAGTCTTGGCCTCCGGTACGGTGAGGCCAAACG
GCGCGCACACGACCACGATCACCCCCATCATCTTCCTCAGCTGATCAGGT
GATCTCGAGAGGACCCCGGCATCGTCAGCATAAAGCATGTCCCAAAGCGA
CGTAAATCGCGGGACTGTGACGAAAATCACGGGACTATTCGGGCTTTTTT
GGTGAAGTGGTGGTATGGAAGTGGAAGCGGGAATAATCGGACCATGGACA
TGCACTTTCGTTCCACCTACCCCCctCAGTGTATCACCTATTAATAACAA
CTTACCCCTGAGACGGAATGCCGTAATATTTCAAGGGAACGCCCCCTCGC
GGGGTAAAATGTATCAACATTCAACATTCCCCTCCCTGCAGCACTGAAGT
AGAGCCTATGAGTACAGTAGTTTCCTCTTGTGGACGGTATACAATATACA
TTATACAGTATACCGAGGATTGGAGCGTAGAAATATCACTTCCGGAGTAC
AGGTATTAATAACTCTTTCGGCAAGGTCTCTCCGAAACCGTTATGCTTGT
TTCGGTATCAGCAAGCATTTATAATATTAATAAAGTGGCGGCGGTTGTAC
CGTTTGAGGAGCGGAGTGACTTTCACCGATGTTGCGTCATCCTCCAATGA
TTAGCTCAACGGTATCTACTGGAGTGCGTTTTTTTTTCTAGGGCGGGCCT
AGAGTTACTCGTGACAAAATCGAGTGACGCCGGAAGCAAACAGTGTCGAC
GCGATGATGACCACGAGCGACATGCCTCCAGTAAAATGCTTGCAAGCCTC
GATTGGAAATGCCCTAGCACATCGCATCTATTAAAAGACGAGAATTTACG
ACAGCCTCCCAGCGGAGCTGTGGGTACTGTAGCTGCTGCTCGCTCCCGGC
ATTTCCGGTCACTGCTGCTGGTTTCGTAAACGAGTGACAGTCGTGCACAC
CGCATACCGTGCTTTTCATGCCATTGATTGAGAACCATCGATTGAGAACC
ATCGGGGTAGACAAATTGGCGCGGTGGCGTAAACTCTTATCTCATGTCCC
AGCCACCTAACATGAGAACGCGATAACATCGCGTCCTCCGGCGTAATCAT
CGGCGTTTTCCGTTTGTTTCCCCGACCGACCAGCAGAACTTACATGTCTA
CCACCGATGCTGAGGCGATTGTCCCTCTCGAAAGCACGCGTACGATGCAG
CCGCCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig124:627367..631074+

>mRNA_F-serratus_M_contig124.1831.1 ID=mRNA_F-serratus_M_contig124.1831.1|Name=mRNA_F-serratus_M_contig124.1831.1|organism=Fucus serratus male|type=CDS|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig124:627367..631074+ (Fucus serratus male)
TCCTCTTCCTCGCTCCTAGATTGGGGAAGATGTGTTGTTCGCGTTTCTAT
TATTTGCGCATTGTTCTCGATTTGCGCGGGATGGGCTTTGTCCGGTGGGA
AGCTAGCCAGGATCGCTGACATGATGAGGACCGTCGCTCTGCCTCTGTAC
TCGTACAGTGGTGGATCGTGGTTGAAGCAGTCCTCTTCCTCGCTCCTAGA
TTGGGGAAGATGTGTTGTTCGCGTTTCTATTATTTGCGCATTGTTCTCGA
TTTGCGCGGGATGGGCTTTGTCCGGTGGGAAGCTAGCCAGGATCGCTGAC
ATGATGAGGACCGTCGCTCTGCCTCTGTACTCGTACAGTGGTGGATCGTG
GTTGAAGCAGAACTTACATGTCTACCACCGATGCTGAAACTTACATGTCT
ACCACCGATGCTGA
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