mRNA_F-serratus_M_contig70.18182.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18182.1
Unique NamemRNA_F-serratus_M_contig70.18182.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:419720..421125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size442
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18182.1prot_F-serratus_M_contig70.18182.1Fucus serratus malepolypeptideF-serratus_M_contig70 419780..420666 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932148.8429961-UTR-F-serratus_M_contig70:419719..4197791622932148.8429961-UTR-F-serratus_M_contig70:419719..419779Fucus serratus maleUTRF-serratus_M_contig70 419720..419779 +
1690964171.512781-UTR-F-serratus_M_contig70:419719..4197791690964171.512781-UTR-F-serratus_M_contig70:419719..419779Fucus serratus maleUTRF-serratus_M_contig70 419720..419779 +
1622932148.948245-UTR-F-serratus_M_contig70:420666..4206981622932148.948245-UTR-F-serratus_M_contig70:420666..420698Fucus serratus maleUTRF-serratus_M_contig70 420667..420698 +
1690964171.5666428-UTR-F-serratus_M_contig70:420666..4206981690964171.5666428-UTR-F-serratus_M_contig70:420666..420698Fucus serratus maleUTRF-serratus_M_contig70 420667..420698 +
1622932148.9691641-UTR-F-serratus_M_contig70:421030..4211251622932148.9691641-UTR-F-serratus_M_contig70:421030..421125Fucus serratus maleUTRF-serratus_M_contig70 421031..421125 +
1690964171.5770316-UTR-F-serratus_M_contig70:421030..4211251690964171.5770316-UTR-F-serratus_M_contig70:421030..421125Fucus serratus maleUTRF-serratus_M_contig70 421031..421125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932148.864671-CDS-F-serratus_M_contig70:419779..4198041622932148.864671-CDS-F-serratus_M_contig70:419779..419804Fucus serratus maleCDSF-serratus_M_contig70 419780..419804 +
1690964171.525591-CDS-F-serratus_M_contig70:419779..4198041690964171.525591-CDS-F-serratus_M_contig70:419779..419804Fucus serratus maleCDSF-serratus_M_contig70 419780..419804 +
1622932148.9083123-CDS-F-serratus_M_contig70:420159..4202911622932148.9083123-CDS-F-serratus_M_contig70:420159..420291Fucus serratus maleCDSF-serratus_M_contig70 420160..420291 +
1690964171.538791-CDS-F-serratus_M_contig70:420159..4202911690964171.538791-CDS-F-serratus_M_contig70:420159..420291Fucus serratus maleCDSF-serratus_M_contig70 420160..420291 +
1622932148.926418-CDS-F-serratus_M_contig70:420568..4206661622932148.926418-CDS-F-serratus_M_contig70:420568..420666Fucus serratus maleCDSF-serratus_M_contig70 420569..420666 +
1690964171.5555189-CDS-F-serratus_M_contig70:420568..4206661690964171.5555189-CDS-F-serratus_M_contig70:420568..420666Fucus serratus maleCDSF-serratus_M_contig70 420569..420666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18182.1

>prot_F-serratus_M_contig70.18182.1 ID=prot_F-serratus_M_contig70.18182.1|Name=mRNA_F-serratus_M_contig70.18182.1|organism=Fucus serratus male|type=polypeptide|length=85bp
MKLRRGSRDQVKVAENIGGDSRNVSAVATPRRRRSVAGMAAGSARAALHK
TTGRRAGPMVESQPRAAAGGFRRRRGSPAKFKLV*
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mRNA from alignment at F-serratus_M_contig70:419720..421125+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18182.1 ID=mRNA_F-serratus_M_contig70.18182.1|Name=mRNA_F-serratus_M_contig70.18182.1|organism=Fucus serratus male|type=mRNA|length=1406bp|location=Sequence derived from alignment at F-serratus_M_contig70:419720..421125+ (Fucus serratus male)
GTCCGAGGGAGGTTGGGTTTTGGTGAAGGCGGGGGGGGTTGGTTAATCGT
TGGGCCCCAGATGAAACTTCGGCGAGGAAGCAGAGGTGAGCCAACACGAG
TGTTCTGTCCGCCGTTGTGAAAGAGGATGTGCATTTTCAGCATCCGCGAG
GCTTACCCCCTACCCCCATCTCCCCCCGGAAATTGCAGGGTAGGGGTGTA
CGCCCAACCAAGTGCAGGGTGGTACGCCCCAATGCACTATAAACAGCGCA
ACAAAAAAAGGAAAACATTCCCAAAATATTGGAACACATACCCCCGGGGA
GAGAAAGAGCGGGGAGGGAGGGAGGGAGGGAGGGGTTGCGTGATACAATG
GTGGTGGTGGTGGTGCTTGACTACTTGGCTAGCGTCGTCTCTATAGACCC
ATGACCTCTATCATACGATGACTTCCTTTTGGCGACACAGATCAAGTCAA
GGTGGCGGAAAACATCGGCGGTGACTCGCGGAACGTCTCAGCGGTCGCGA
CGCCTCGCCGGAGGAGATCCGTCGCCGGGATGGCTGCCGGAAGTGCGAGA
GCAGCGTTGCACAAAACGACAGGTGCGCCTACTTTTTGCGTGAAAATATG
ATTTGTCATCCGTCTATAGCGCAAGGGGTCCCGTGCAACGCCGCTTTCGA
TAGATGGTGAGTCGCCCGGCCCGTACCATTCATACCCTGCCTACGTACCG
ATAGCTTGAAACGGCCCAAGACAACGGAGCGGCAGAAAGAAAATACTACT
GGCATGTTTTTTTGTGAAATGTTTTTGCTGATTGCTTGAGGCGATCGTGA
TATATGTATGCGTTATGTGTTGTGTGTGTATATACATATAAACCGGCAGG
GCGTCGGGCGGGGCCGATGGTCGAATCTCAGCCGAGGGCAGCGGCCGGGG
GTTTTCGCCGGCGACGCGGATCGCCCGCCAAGTTCAAGTTGGTCTGAGTC
CAAAAGGCAGGGCACCCCGCCTCCTGTTGGTGAGAGAGGAGAGGGAAAGG
TGGTGGAGCAACGGGGGATGCTGTGTGGTTGACCAAGTCAGTGCAATTCG
ACAGTTTGTATAGGCCATGAATAGTTTGGTACACTATTAATAGTATTGTA
GAGCTACATTTGCCTTTTTTGTAGCCTCCGGGCGAGGCTAGTTAGACGCC
ATAGTAGTTCCGTTTCTATAGGTTCACCCCTCCAGCCATGAGCCTGCTGC
GCCCATAAAAGCTCTCAGGGCGGATAAGCGCGTGTTGAACTGCGTTCTTC
CTGTCGCCCTCTCCCGCCTTCCTTGTTTCCTCCTCGCGGCGCGTCTCCGG
GTGGGAGAAAGCCTCGAAGCCGTCCTCGCCGCCTCAGCCACGTTCGAGAT
GCTCGGACTTGGTGCGGCAAGGGGGCTGGGCAAACACAAGACTCATCGAG
ACCCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig70:419720..421125+

>mRNA_F-serratus_M_contig70.18182.1 ID=mRNA_F-serratus_M_contig70.18182.1|Name=mRNA_F-serratus_M_contig70.18182.1|organism=Fucus serratus male|type=CDS|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig70:419720..421125+ (Fucus serratus male)
ATGAAACTTCGGCGAGGAAGCAGAGATGAAACTTCGGCGAGGAAGCAGAG
ATCAAGTCAAGGTGGCGGAAAACATCGGCGGTGACTCGCGGAACGTCTCA
GCGGTCGCGACGCCTCGCCGGAGGAGATCCGTCGCCGGGATGGCTGCCGG
AAGTGCGAGAGCAGCGTTGCACAAAACGACAGATCAAGTCAAGGTGGCGG
AAAACATCGGCGGTGACTCGCGGAACGTCTCAGCGGTCGCGACGCCTCGC
CGGAGGAGATCCGTCGCCGGGATGGCTGCCGGAAGTGCGAGAGCAGCGTT
GCACAAAACGACAGGGCGTCGGGCGGGGCCGATGGTCGAATCTCAGCCGA
GGGCAGCGGCCGGGGGTTTTCGCCGGCGACGCGGATCGCCCGCCAAGTTC
AAGTTGGTCTGAGGCGTCGGGCGGGGCCGATGGTCGAATCTCAGCCGAGG
GCAGCGGCCGGGGGTTTTCGCCGGCGACGCGGATCGCCCGCCAAGTTCAA
GTTGGTCTGA
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