prot_F-serratus_M_contig7.18163.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig7.18163.1
Unique Nameprot_F-serratus_M_contig7.18163.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length250
Homology
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BLAST of mRNA_F-serratus_M_contig7.18163.1 vs. uniprot
Match: A0A6H5KSU2_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSU2_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 8.340e-44
Identity = 87/148 (58.78%), Postives = 106/148 (71.62%), Query Frame = 0 
Query:   10 CLLPLASLPDGALALVLSFGTVAEIVATNVVCRSWNLHGNRVDLWQALGETFEVSMPISLRPQSSLGAPAGTRPA------GKRFLRSSANAKRTFFKSYATARTTHRLTHDAVLSEAYTLFRMQDSVPRLRFLLRRRWGIALKTADQ 151
            C LPLA +PDGALA+V SF  V ++++ N VCR W L G RV+LW +LG+ FEV+MP+SL PQ+S  A AG+  A      GKR LRS ANAKRTF KSYA A  + RL HD+ LSEAYTLFRM+DSV RLR LLRRRWG+    + +
Sbjct:    7 CHLPLAFIPDGALAIVFSFLAVNDLLSANKVCRDWVLDGTRVNLWASLGKIFEVTMPVSLGPQTSQRA-AGSNGATAGGGRGKRVLRSGANAKRTFLKSYAAAVKSDRLKHDSTLSEAYTLFRMKDSVMRLRTLLRRRWGLTFHPSSK 153
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BLAST of mRNA_F-serratus_M_contig7.18163.1 vs. uniprot
Match: D7FJ95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ95_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 4.860e-43
Identity = 86/147 (58.50%), Postives = 103/147 (70.07%), Query Frame = 0 
Query:   10 CLLPLASLPDGALALVLSFGTVAEIVATNVVCRSWNLHGNRVDLWQALGETFEVSMPISLRPQSSLGAPAGTRPA-----GKRFLRSSANAKRTFFKSYATARTTHRLTHDAVLSEAYTLFRMQDSVPRLRFLLRRRWGIALKTADQ 151
            C LPLA +PDGALA+V SF  V ++++ N VCR W L G RVDLW +LG+ FEV+MP+SL PQ+S  A   T        GKR LRS ANAKRTF KSYA A  + RL HD+ LSEAYTLFRM+DSV RLR LLRRRWG+    + +
Sbjct:   41 CHLPLAFIPDGALAIVFSFVAVNDLLSANKVCRDWVLDGTRVDLWASLGKIFEVAMPVSLGPQTSQRAAGSTGATAGGGRGKRVLRSGANAKRTFLKSYAAAVKSDRLKHDSTLSEAYTLFRMKDSVMRLRTLLRRRWGLTFHPSSK 187
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7.18163.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSU2_9PHAE8.340e-4458.78F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FJ95_ECTSI4.860e-4358.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 42..249
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..41
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 10..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7contigF-serratus_M_contig7:1555556..1563774 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7.18163.1mRNA_F-serratus_M_contig7.18163.1Fucus serratus malemRNAF-serratus_M_contig7 1552510..1563785 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig7.18163.1 ID=prot_F-serratus_M_contig7.18163.1|Name=mRNA_F-serratus_M_contig7.18163.1|organism=Fucus serratus male|type=polypeptide|length=250bp
MVDLPPVSGCLLPLASLPDGALALVLSFGTVAEIVATNVVCRSWNLHGNR
VDLWQALGETFEVSMPISLRPQSSLGAPAGTRPAGKRFLRSSANAKRTFF
KSYATARTTHRLTHDAVLSEAYTLFRMQDSVPRLRFLLRRRWGIALKTAD
QSASRSSVGKGAGGKSMVGVCCPESQECPGGDRHGALRTKPIGSSGSSGT
TATAGVVKREKGASAAGALLTMRASLGGGRSGGVWTSTTGTASWKAILC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf