mRNA_F-serratus_M_contig7.18156.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7.18156.1
Unique NamemRNA_F-serratus_M_contig7.18156.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7.18156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7contigF-serratus_M_contig7:1333854..1334602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue5.9e-09
Seed eggNOG ortholog2880.D7FLD3
Preferred nameMYO16
KEGG koko:K08803,ko:K17481
KEGG Pathwayko04140,ko05200,ko05219,map04140,map05200,map05219
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
EC2.7.11.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko04812
Exons2
Model size540
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932134.0129955-CDS-F-serratus_M_contig7:1333853..13341141622932134.0129955-CDS-F-serratus_M_contig7:1333853..1334114Fucus serratus maleCDSF-serratus_M_contig7 1333854..1334114 +
1690964164.3526516-CDS-F-serratus_M_contig7:1333853..13341141690964164.3526516-CDS-F-serratus_M_contig7:1333853..1334114Fucus serratus maleCDSF-serratus_M_contig7 1333854..1334114 +
1622932134.0488415-CDS-F-serratus_M_contig7:1334325..13346011622932134.0488415-CDS-F-serratus_M_contig7:1334325..1334601Fucus serratus maleCDSF-serratus_M_contig7 1334326..1334601 +
1690964164.3698518-CDS-F-serratus_M_contig7:1334325..13346011690964164.3698518-CDS-F-serratus_M_contig7:1334325..1334601Fucus serratus maleCDSF-serratus_M_contig7 1334326..1334601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7.18156.1prot_F-serratus_M_contig7.18156.1Fucus serratus malepolypeptideF-serratus_M_contig7 1333854..1334601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7.18156.1

>prot_F-serratus_M_contig7.18156.1 ID=prot_F-serratus_M_contig7.18156.1|Name=mRNA_F-serratus_M_contig7.18156.1|organism=Fucus serratus male|type=polypeptide|length=179bp
RRKEFPTGPKFRCKSYIERPVLPTMHVPDVVGKQGDGSWKSSFANPVFEA
LRQGNVGSVRAFLAAGVDVHLASQKTGRTLLHFACRQGSGEMVSLLLSKG
AKSRAKTFLYLSPLHLACSQGHIEASRLLLDAEASVDDRDKEGTTPLHLS
SVKGHLDIVRLLLQCSADINGVDRIGWTP
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mRNA from alignment at F-serratus_M_contig7:1333854..1334602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7.18156.1 ID=mRNA_F-serratus_M_contig7.18156.1|Name=mRNA_F-serratus_M_contig7.18156.1|organism=Fucus serratus male|type=mRNA|length=749bp|location=Sequence derived from alignment at F-serratus_M_contig7:1333854..1334602+ (Fucus serratus male)
CGGCGCAAAGAATTTCCTACGGGTCCAAAATTCCGGTGCAAATCGTATAT
CGAACGTCCGGTGTTGCCGACGATGCATGTTCCTGACGTTGTTGGCAAGC
AAGGCGATGGTTCGTGGAAATCATCTTTTGCAAACCCCGTATTTGAAGCT
CTTCGCCAAGGTAACGTGGGCAGTGTACGTGCATTCCTGGCGGCTGGCGT
CGACGTCCATCTAGCAAGTCAGAAAACTGGAAGAACGCTACTTCATTTCG
CTTGTCGTCAGGTAAGGGCTAGAATACTATATGTATAACTTGCTTCGAAT
CCACAGGTAGCGCACCGGCTGTCTAGTACCTGGTAGTATTCATCGTACCC
AACGCACTACGTACCCGTAGCTTCGTCGACCTTGTGAGCGCATGCTCACG
AAACACATCTGATCTCTGTGCTTGCCCGCTCGTTGCAACTAACCCATGAT
ATCAAAACGCTGGGAATGCAAGGGATCCGGGGAGATGGTGTCCCTCCTCT
TGTCCAAAGGTGCCAAATCCAGGGCAAAGACGTTTCTTTACCTCTCGCCC
CTACATCTCGCATGCAGCCAAGGGCATATCGAAGCGTCTCGTCTTTTGCT
TGACGCGGAGGCTTCAGTAGACGATCGGGATAAAGAGGGTACAACACCTC
TTCATCTCTCTTCCGTGAAGGGACACCTCGATATTGTCCGACTGTTGTTG
CAGTGTAGTGCCGATATAAACGGGGTGGATAGGATCGGTTGGACGCCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7:1333854..1334602+

>mRNA_F-serratus_M_contig7.18156.1 ID=mRNA_F-serratus_M_contig7.18156.1|Name=mRNA_F-serratus_M_contig7.18156.1|organism=Fucus serratus male|type=CDS|length=1074bp|location=Sequence derived from alignment at F-serratus_M_contig7:1333854..1334602+ (Fucus serratus male)
CGGCGCAAAGAATTTCCTACGGGTCCAAAATTCCGGTGCAAATCGTATAT
CGAACGTCCGGTGTTGCCGACGATGCATGTTCCTGACGTTGTTGGCAAGC
AAGGCGATGGTTCGTGGAAATCATCTTTTGCAAACCCCGTATTTGAAGCT
CTTCGCCAAGGTAACGTGGGCAGTGTACGTGCATTCCTGGCGGCTGGCGT
CGACGTCCATCTAGCAAGTCAGAAAACTGGAAGAACGCTACTTCATTTCG
CTTGTCGTCAGCGGCGCAAAGAATTTCCTACGGGTCCAAAATTCCGGTGC
AAATCGTATATCGAACGTCCGGTGTTGCCGACGATGCATGTTCCTGACGT
TGTTGGCAAGCAAGGCGATGGTTCGTGGAAATCATCTTTTGCAAACCCCG
TATTTGAAGCTCTTCGCCAAGGTAACGTGGGCAGTGTACGTGCATTCCTG
GCGGCTGGCGTCGACGTCCATCTAGCAAGTCAGAAAACTGGAAGAACGCT
ACTTCATTTCGCTTGTCGTCAGGGATCCGGGGAGATGGTGTCCCTCCTCT
TGTCCAAAGGTGCCAAATCCAGGGCAAAGACGTTTCTTTACCTCTCGCCC
CTACATCTCGCATGCAGCCAAGGGCATATCGAAGCGTCTCGTCTTTTGCT
TGACGCGGAGGCTTCAGTAGACGATCGGGATAAAGAGGGTACAACACCTC
TTCATCTCTCTTCCGTGAAGGGACACCTCGATATTGTCCGACTGTTGTTG
CAGTGTAGTGCCGATATAAACGGGGTGGATAGGATCGGTTGGACGCCGGG
ATCCGGGGAGATGGTGTCCCTCCTCTTGTCCAAAGGTGCCAAATCCAGGG
CAAAGACGTTTCTTTACCTCTCGCCCCTACATCTCGCATGCAGCCAAGGG
CATATCGAAGCGTCTCGTCTTTTGCTTGACGCGGAGGCTTCAGTAGACGA
TCGGGATAAAGAGGGTACAACACCTCTTCATCTCTCTTCCGTGAAGGGAC
ACCTCGATATTGTCCGACTGTTGTTGCAGTGTAGTGCCGATATAAACGGG
GTGGATAGGATCGGTTGGACGCCG
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