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Homology
BLAST of mRNA_F-serratus_M_contig6990.18104.1 vs. uniprot
Match: A0A6H5L805_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L805_9PHAE) HSP 1 Score: 122 bits (305), Expect = 1.890e-25 Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 3
Query: 162 MALADTQGFRLAIDRSLFGPQERRWNERKLPDVATNMACTVLYTFGACVLVYHICCDYNTLGSRGCLEMIPKHVFSAVAIHVVAIVLRWKIERMLRLSFRINDE 473
MAL DTQGF +A+DRSLFGPQ RRW ERKLP+VATN+A + FGAC+LV+HI +Y T G L+ PKH+ +AV +H+VA LRW I+RML ++F DE
Sbjct: 1 MALVDTQGFVMAVDRSLFGPQGRRWIERKLPNVATNLAFVAVSAFGACLLVFHITREYYTSGYWAILQT-PKHILNAVVLHLVARALRWHIDRMLGVNFAAGDE 103
BLAST of mRNA_F-serratus_M_contig6990.18104.1 vs. uniprot
Match: A0A835ZHV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV2_9STRA) HSP 1 Score: 104 bits (259), Expect = 4.810e-20 Identity = 49/103 (47.57%), Postives = 70/103 (67.96%), Query Frame = 3
Query: 162 MALADTQGFRLAIDRSLFGPQERRWNERKLPDVATNMACTVLYTFGACVLVYHICCDYNTLGSRGCLEMIPKHVFSAVAIHVVAIVLRWKIERMLRLSFRIND 470
MAL D +A+DRSLFGPQ RRW ERKLP+V +NM ++ FGAC+L++ IC DY G G L +PKH+ +A +H++A +LRW I ++++ SF +D
Sbjct: 1 MALVDINPLTVAVDRSLFGPQGRRWIERKLPEVTSNMTFIMVSGFGACLLMFGICTDYQRFGFVGGLGCLPKHIAAATLVHLLAKLLRWHITQVVQGSFMPDD 103
BLAST of mRNA_F-serratus_M_contig6990.18104.1 vs. uniprot
Match: A0A835YVS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS8_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.400e-5 Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 3
Query: 240 ERKLPDVATNMACTVLYTFGACVLVYHICCDYNTLGSRGCLEMIPKHVFSAVAIHVVAIVLRWKIERMLRLSF 458
E KLP V +N+ ++ FGAC+L++ +C DY G +PKH+ +A +H+VA +LRW I R + +F
Sbjct: 61 EHKLPYVVSNITFILVSGFGACLLMFTVCADYQRGGLLRGAAALPKHLANAAVLHLVARLLRWHIGRTVYRAF 133
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal anchor |
| Exons | 3 |
| Model size | 1671 |
| Cds size | 510 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932133.2995973-UTR-F-serratus_M_contig6990:7556..7717 | 1622932133.2995973-UTR-F-serratus_M_contig6990:7556..7717 | Fucus serratus male | UTR | F-serratus_M_contig6990 7557..7717 + |
| 1690964164.0847788-UTR-F-serratus_M_contig6990:7556..7717 | 1690964164.0847788-UTR-F-serratus_M_contig6990:7556..7717 | Fucus serratus male | UTR | F-serratus_M_contig6990 7557..7717 + |
| 1622932133.3845992-UTR-F-serratus_M_contig6990:12890..13890 | 1622932133.3845992-UTR-F-serratus_M_contig6990:12890..13890 | Fucus serratus male | UTR | F-serratus_M_contig6990 12891..13890 + |
| 1690964164.1244383-UTR-F-serratus_M_contig6990:12890..13890 | 1690964164.1244383-UTR-F-serratus_M_contig6990:12890..13890 | Fucus serratus male | UTR | F-serratus_M_contig6990 12891..13890 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932133.327487-CDS-F-serratus_M_contig6990:7717..7876 | 1622932133.327487-CDS-F-serratus_M_contig6990:7717..7876 | Fucus serratus male | CDS | F-serratus_M_contig6990 7718..7876 + |
| 1690964164.0934918-CDS-F-serratus_M_contig6990:7717..7876 | 1690964164.0934918-CDS-F-serratus_M_contig6990:7717..7876 | Fucus serratus male | CDS | F-serratus_M_contig6990 7718..7876 + |
| 1622932133.3449893-CDS-F-serratus_M_contig6990:9037..9190 | 1622932133.3449893-CDS-F-serratus_M_contig6990:9037..9190 | Fucus serratus male | CDS | F-serratus_M_contig6990 9038..9190 + |
| 1690964164.1016526-CDS-F-serratus_M_contig6990:9037..9190 | 1690964164.1016526-CDS-F-serratus_M_contig6990:9037..9190 | Fucus serratus male | CDS | F-serratus_M_contig6990 9038..9190 + |
| 1622932133.3638914-CDS-F-serratus_M_contig6990:12692..12890 | 1622932133.3638914-CDS-F-serratus_M_contig6990:12692..12890 | Fucus serratus male | CDS | F-serratus_M_contig6990 12693..12890 + |
| 1690964164.11206-CDS-F-serratus_M_contig6990:12692..12890 | 1690964164.11206-CDS-F-serratus_M_contig6990:12692..12890 | Fucus serratus male | CDS | F-serratus_M_contig6990 12693..12890 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6990.18104.1 >prot_F-serratus_M_contig6990.18104.1 ID=prot_F-serratus_M_contig6990.18104.1|Name=mRNA_F-serratus_M_contig6990.18104.1|organism=Fucus serratus male|type=polypeptide|length=170bp
MALADTQGFRLAIDRSLFGPQERRWNERKLPDVATNMACTVLYTFGACVL VYHICCDYNTLGSRGCLEMIPKHVFSAVAIHVVAIVLRWKIERMLRLSFR INDEDRSDSTEESDTRDEVLSHDDHVERSQSVEMVPAQEEATATVMTEAA VAGGDAARDADGVESDLFF* back to topmRNA from alignment at F-serratus_M_contig6990:7557..13890+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig6990.18104.1 ID=mRNA_F-serratus_M_contig6990.18104.1|Name=mRNA_F-serratus_M_contig6990.18104.1|organism=Fucus serratus male|type=mRNA|length=6334bp|location=Sequence derived from alignment at F-serratus_M_contig6990:7557..13890+ (Fucus serratus male) CTCTAGTGCACCATCGGAAACATCGACAGCGGAGTTTTTGGACCCTTCCC
CGCAAGCACACCCGCTGTGCGGACTACGTTTGGTGGCCAGAGTAGAGGGA
GAGGATAATTAAAAGTGGCATCTGATCGTCGTGAGGACTAATACACCGTG
TTCCAGACAACATGGCGCTCGCCGACACACAAGGCTTTAGGCTAGCTATC
GATCGCTCGTTGTTTGGACCACAGGAAAGGCGATGGAATGAGCGCAAGCT
CCCAGACGTCGCCACAAACATGGCGTGCACAGTTCTTTACACCTTCGGAG
CGTGCGTTCTCGTCTATCATGTGAGTACTAGTACCTGTGGGGCCACACAG
AGGATGAAGGTCACACACAGATcAGTATTTGTGCGGTGCGTGCCTTACTT
TTTCTCTCGACCGGACAGAAAAGAAAGATATATCATACAGTAGCTCGGGC
AAATAATCAGTACCACACAAAATTCAAAATTCGACCTCACGATCGACAAT
GCGAGTGGCATAGAATGATGACTAGGATGACAGGGCCGGATTGCGCGGTT
ATGTGCAATTTGATAAATACACACACACTCATGTATGTGTAGATAGACCT
TCATGCTCGATGAACATTTTTGAACACACGGTTCTGCGCATAGAGCCTAT
CAATATTGCTAGTAGGAGTACTGAGTTTGCATCGCGATAGAAAATGCAGG
CGAGAACCGGGTAGGGATGTGAAGATTCTTAGTGACAGGATTGATTGATT
GATTGATTGAATTCTCACATAAGCTGAAAATGCTGCGCATCGGTCCTGCT
GAACATTCCCGCTGTACATGTGTAGATAGACCTTCACGCTCCGCCGATGA
GCAATTACAAAAGAACGCGCCGCACAGAAAATGCCTTCGAGAAAAAACGA
CTATCTGCTGCGTCAGCCTGCTTCTTTTCTTTAGAATCAGGCGTGGCACT
TTTCCGTACAGAGATGAGGACGACGCCAGCTAGTACAACAAGCCAAACAC
CAACCATACATTACACAAACACCTTACTACCTGTATTAAGCTGACGATAG
TTACACGACTGTCCTTCAGCGAGCGTATAGCGATAGCTAACCTATCTTTA
TAGATTAATTTTTTGTACGCTACACGTGTTTCAAAGGTTCAGACGTTTGT
GGAAGCCATACGTGCTCACCACGTCCTACTCGCTCTACGGCACACATAGT
CTACATGTATAAACTTAACGAGAAGCTTGTGGAAGAATAATTTCATTTGG
ACCAGCCCAGCGTTTTCTCCTTTGCGACTCATCATTTAATTTCCTGCTGT
TTCAACCCACGTGACCGTCTCAGCCTCGCGGCATTCTTATATAGAAAAAG
AGAATGATTCGCGCCCGTTCGTTCGTGGCTGCTGCTATGTATTCATACTG
ATAAACGATTACCATTAAATAATGCACGGACTGTCTGTTGTGTGTGTAAA
CACGGGGTACTTTTCTCAAATTTGCCTCAAGATCTGCTGCGACTACAATA
CTCTAGGGTCTAGGGGTTGTTTGGAGATGATCCCGAAGCACGTTTTCAGC
GCCGTGGCGATCCACGTCGTGGCGATAGTTCTGCGGTGGAAAATAGAGCG
CATGCTCCGGCTCAGCTTCCGGATCAACGATGAGGTGCGGAGCTCACTGC
GGTGTACGGTTATTCATAGAGCGCTTGTACAGAGTGCTTGACAAGAGTCG
ACAATACTTACTTGGTACAAGATTTTGTGTATGGTTCGATAGCACTATTA
ATATTATCATATTCTTTTCTGTTAGGTTTGGTAGATTTACATGGCTATTC
ATGTAGTCTATTTCTGTACCTTAGTTTGGGTTAGCCTGTGACCACGGAAA
TTCGTTTCTTTGCCTTGAAGAGTAAGAAAGAGAAGGTACTGGATAGAGGT
CAGAACGGTTTTTAATTTTTAATGTGAAGACAACAACAACAACAACATCA
GAAGGTCTAGGTGCATTCATATTTTTCTTTAAACAACAATTGTACAGGAT
TAGAGTGTATTTCTCCCTCAGACTTCGGGGAACCTGTCGTTACAAATACC
ATATAACAGCAGTATATTATTACTATTAATACCATTTTTGAGTTTGTACT
GGGTGTCCCTGCATGACTTTTAACGTAAGTGTATAGTTTAACATTGGGTT
TTTCTCCCCGGCATCATAATGTTGACCCAATGATTCTACCATTTGGGTAA
CCCGTTGAAAATGCCTCGGAGAGGGTTTGGATCTGCAGACTATGATCCCA
CCTAACTAAGTGTTTGGACACTCATTCCTTAAACCTAGATCATTTGTACT
TTCCATTTCTATTATCCGGCCTATACTACCGATAACAATAATCTTGTCAC
AAGGTAGAAAAACACCATTCGGAAGGAAAGAACGTACGACGTACTCTCCG
TACAAAGGGAAAGCGGAAATGGTACAAGAAATACTCGAAAAAGCGACATC
ATCCCCAAGATAAACAAGAAAAATAAAATAAAAAGAAAGAAACACGTGTG
GCTACCGGGGCGCCTGCATATCGAAGGACGATTGAACGAAAGAACGAAAG
GCCGCGGCTTCAACGAAAGCATAAGGACGAAAAACGAAGCAAAACATAAC
AAACGTAACACCAGAGAAAAACGTCATGGCATCTGCAAACAGAACGTCCG
GAGGATACCAGTTCGCGCCACTTGGGGCTAGTCAACCAGGGCGAGCAAAC
CAGCACGAGCCCGCTTGCTTTGGGCTATCCTCTTCTTGGTCCTTCCCGTC
ACGTTCGGGCATACCACTGCGTGCCTTAGTTCAGCCTTGACTTTCTCTGC
AGCGATCCATTTTGCCATGAAACGTTCCGCCCCTTGTTCTGCCGTTCTGC
GCCATTTCCCCTCGTCCTTGGCTGCAGTTGTCCACTGGCCGGCGTTGATG
CCGAAAGCTCTGAGATCGTCCAGGAAACACCCCATCCACTCTTTTTCCTG
GCCCCCCACACAGTCCGCGCCCCCCATCATTTCGCCGAACATCACGCACT
TAGGTAGTCTCGTATCCTCCATGCGCGCCACAAATCCCGCAAACAAGATC
CGCCTCCTGCGTAAAGTCGCCTCGATGCTCTCACTTCCCGTCTTGGGGAG
CGTGTCCAGATAGGAAATCGGGTGGTCGGCGCGATTGTGCTTTCGCCAAC
CGATGCAGCGAGTCAAGAACCTGTGGTGGGCTGGGCGCAGCGTGTCGTAG
TGGCACGCGCGCGGGCTCCACGTGACGCATCCGTACAGCATTGTCTCGAG
TACCTCGGCTCTTAGCATCCGGATTTTGAGCTCGAGGGGAGCGCTCGGTC
GGTCGTACAGTTCGAGGGTGTACTTCCGGAAGCTGCACTTTGCGTTGCGT
ACGCGCCGGTCGACCTCGATGGACAGGTCGGCATTTTGGTTGACGTTTCC
TCCGAGGTATACAAACTCGTTCGTCTGATTGTACACCTGGCCCGCTGCCT
CTACGCTGAATGTGGCGGTGGACTCCGGCATCCCCTTCGCGCGTAAACAC
ATGATCTCAGTCTTGACCTCCGATACGGTGAGACCAAACGCCGGGCACAC
GACCACGATCACCCCCATCATCTTCCTCAACTGCTCGGGTGATTGCGAGA
CGACCCCGGCATCGTCAGCGTTAAGCATACCCCAAAGCGGCGTCGCGAGG
ACCGACTCTTCGGCAGTTGCTCCCCCCCCGCCCCCCGGCCCCCCTTTTCT
TCCTCGGGTGTACCAAAGCGTCCGTGATGCCTTTGTCCGCCTTGAAACGC
GTGGAGGCCACGTTTATAACCGCCGCGAAGAAGATGTTGAACAGGAGGGG
TGCGAGTACGCATCCTTGACGAAGGCTTTGTTCCACAGCGAACCACCTCG
AGCACAGCTTGTCGTCGAGCCGCACGCATGCTTGCATGCCATCGTGGAAT
TGACGAATGACCGAGATCATAATCTGTGGCACGCCAAAACGGGCGAGTAC
TGTCCAGAGGAGGGTTCAATCAACGGAGTCGTACGCTTTGGTAAGGTCGA
TAAAGCATACGTAGAGCGAAATTCGTTTCTTCCGCGACAGCTCCTGTAAC
CGACGAATCACAAACATCATATCGGTGGTAAAACGGTTCGGTCGGAACCC
ACTCTGTTCCTCCGACAGGATGCCCACGCGCTCACAGTACTCGCTGAGGC
GGCGAGCGATGATCTTCAGCAGTATCTTGCCGGCGTGCGCTACCAGCGAG
ATGCCCCCGTATTTGCCGCACTCAGTCCGGTCCTTCTTTTTGTGGAGTAC
CATGATGATGGCATCTTTCCACTGTTGCGGCACCTCGCCCCCCCTCCAAA
TACGAAGAATGACATCGAGCAGTCTCCTGCGCAGGGCAGGATCACCGTTG
AGGGTGATCTTGAACAGCTCGATGGAGACCCCGTCCGGTCCGACAGCTTT
TCCGTTCGCCAACGAACGGATAGCGTCTGTCGGCTCCTGCATCGTGGGCT
GAACTTCTAGCGGCATGTTTTCGGGCCACTGGTCAAGGATGTTATGGATA
TATGCAGTACAGTAGTACCCTGTGGGTCGGTCCGTGGATGATGTGATATA
CTTCGGCGCTGATTTTGGCCCATTTTCATAGTTTCGTTTTTGTTTTTGTG
GGGTTTTGTTTTTTTTTCGTTCAAAACTAATCATTATTGTCTCGAGCGTT
GCCTTCATCTTGCCAAGAACAATCCTGCGGACGGCGCGGCGCGCGCCCTG
GAGTCCGATCTCCGGCTACCGACGGCAAAAGCGATGCTGGTTGTATTCGA
CCAGACATTATGATGTAGCTGTGTCATCGGCGCCTCGCAGCATGCATTCT
CTCCGCCGGAGTTAGATGCGCTCCGGACAAGTACTGTACTGTACTTTACT
GTAGGTTCAGAGCGACAAACAAGATTATCAAGATTCGCGCCTAAAAAGGC
AACGGCGGGGTGTGGGTCCAAGTATTAATAGGCTTACTTTGAAACACTAC
TCTGGTACAAATACCTGGCCCGCGATCGCGCTCTTGACACCATTCAGAAT
GTCTACAGCGGGCAACGCAGTAGCTTCATTTTTGTAATCAATCGCCTGCT
TACCGTTCTAGAGCTCTACCATAGCTAGAGGTGCGCCCACAAACCCGCCC
CCCCCCCCCCCAATATAATACGTTCTCTCTCCGCAGGACCGTTCCGATTC
CACCGAAGAATCCGATACAAGAGACGAGGTTTTGTCGCATGATGATCACG
TGGAGAGATCGCAGAGTGTGGAGATGGTCCCAGCACAAGAGGAAGCCACG
GCGACCGTGATGACGGAAGCCGCCGTCGCTGGTGGTGATGCTGCGCGAGA
TGCCGATGGCGTTGAGTCTGATTTATTTTTCTAAAGTGTACAAGTACAAT
CGACTTTGCCCTGCGGCGCTGGTCATGACACAAAAAAAAAGTGGATAGAA
TCATAAAAGCCGTTTGATGGATGAAGGGATGAGCGATCGATCGATCAGTC
GACGTCGACTTTGGAGAAGAAATGAGAGACTAAGTGGTGAGGAAGTTATA
ACGGCGGACGTTTGAGTGGCATGGGAGGTAGGAAAGGGATTGGACAATTC
TGGGCACACGCTGGCGGTTCTTGGGCGCCTCTGCCGGCGTGTTTTTTCTC
CTCGACTAGACGTGTGGAGGGGGGTCGAATTTCGCGTGGACCAACAGGTC
GGCGATGACGTCATCTCAAAGGGTGAGCACGATGCGCAAACATCGCGTGA
ACACTCGTACTCGTAGTACGTACTTACAGTAGAGATGATCGAGCAGCAGA
GGCCAGGGTCAACCATAAGAGGGTGTGTTATCTCTACTCCTTGAGTTCTT
GAGGAAAATAAGGTGTGATCTCTTTCTGTGGTGTACGAACTGCGCGCCCG
TTTTGCACCCGATCCCCGGGGGCCCAAGCTCCTCGGCTACGGTTGCACGT
GGTCGTTCCCCTTTGTAAGGAGTGACATATCTGGATGGTTCGGTAGAAGG
GAGATGTAGTAAGCGGGGGACGAGGAACGAACGCCGCTACTGCTGACATT
GCCGCGGAGTCTTGTTGAGTATTTTTCTAATTATTGAGGTGGGGCTTTTC
TGCTGCAAGTTGAAGCTGGTGCGCACGATTTTTACCAAGTTTTATGAGCA
AAAAAAGGGGGATTAGGTGTTTTTACCTAATCTCGAAAATATAACGCCGC
AAGTGAAATACGGTAACGATATGAGTATATATATATATAATGTGGAGGCA
GCGTGGGAGGGATTAAGAATGCTGGAAATTGATAATAGGCAGCGATGGGC
ATGCGCGTCAGAGGCAAATATTTGCTATTTACAGTATTACAGCAGGAGGA
ACATGAATATTAATAGGGTTATTGAGGTCATACG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig6990:7557..13890+ >mRNA_F-serratus_M_contig6990.18104.1 ID=mRNA_F-serratus_M_contig6990.18104.1|Name=mRNA_F-serratus_M_contig6990.18104.1|organism=Fucus serratus male|type=CDS|length=1020bp|location=Sequence derived from alignment at F-serratus_M_contig6990:7557..13890+ (Fucus serratus male) ATGGCGCTCGCCGACACACAAGGCTTTAGGCTAGCTATCGATCGCTCGTT GTTTGGACCACAGGAAAGGCGATGGAATGAGCGCAAGCTCCCAGACGTCG CCACAAACATGGCGTGCACAGTTCTTTACACCTTCGGAGCGTGCGTTCTC GTCTATCATATGGCGCTCGCCGACACACAAGGCTTTAGGCTAGCTATCGA TCGCTCGTTGTTTGGACCACAGGAAAGGCGATGGAATGAGCGCAAGCTCC CAGACGTCGCCACAAACATGGCGTGCACAGTTCTTTACACCTTCGGAGCG TGCGTTCTCGTCTATCATATCTGCTGCGACTACAATACTCTAGGGTCTAG GGGTTGTTTGGAGATGATCCCGAAGCACGTTTTCAGCGCCGTGGCGATCC ACGTCGTGGCGATAGTTCTGCGGTGGAAAATAGAGCGCATGCTCCGGCTC AGCTTCCGGATCAACGATGAGATCTGCTGCGACTACAATACTCTAGGGTC TAGGGGTTGTTTGGAGATGATCCCGAAGCACGTTTTCAGCGCCGTGGCGA TCCACGTCGTGGCGATAGTTCTGCGGTGGAAAATAGAGCGCATGCTCCGG CTCAGCTTCCGGATCAACGATGAGGACCGTTCCGATTCCACCGAAGAATC CGATACAAGAGACGAGGTTTTGTCGCATGATGATCACGTGGAGAGATCGC AGAGTGTGGAGATGGTCCCAGCACAAGAGGAAGCCACGGCGACCGTGATG ACGGAAGCCGCCGTCGCTGGTGGTGATGCTGCGCGAGATGCCGATGGCGT TGAGTCTGATTTATTTTTCTAAGACCGTTCCGATTCCACCGAAGAATCCG ATACAAGAGACGAGGTTTTGTCGCATGATGATCACGTGGAGAGATCGCAG AGTGTGGAGATGGTCCCAGCACAAGAGGAAGCCACGGCGACCGTGATGAC GGAAGCCGCCGTCGCTGGTGGTGATGCTGCGCGAGATGCCGATGGCGTTG AGTCTGATTTATTTTTCTAA back to top
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