mRNA_F-serratus_M_contig6982.18099.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6982.18099.1
Unique NamemRNA_F-serratus_M_contig6982.18099.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6982.18099.1 vs. uniprot
Match: D7FTD0_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD0_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 9.200e-13
Identity = 54/127 (42.52%), Postives = 54/127 (42.52%), Query Frame = 1 
Query:    1 GDVMQALDQKQKHVPYRNSKLTFLLQ----------------------------------------------------------------------EHAEEVLATLQREHARSQQKMAALLESRAKN 171
            GDVMQALDQKQKHVPYRNSKLTFLLQ                                                                      EHAEE LATLQREHARSQQKM ALLESR KN
Sbjct:  664 GDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFATRARNISLGPARKNVGAKNLLEEGKDLRAKLREAGRKKEHAEEALATLQREHARSQQKMGALLESRVKN 790
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BLAST of mRNA_F-serratus_M_contig6982.18099.1 vs. uniprot
Match: A0A6H5KBN6_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.220e-13
Identity = 54/127 (42.52%), Postives = 54/127 (42.52%), Query Frame = 1 
Query:    1 GDVMQALDQKQKHVPYRNSKLTFLLQ----------------------------------------------------------------------EHAEEVLATLQREHARSQQKMAALLESRAKN 171
            GDVMQALDQKQKHVPYRNSKLTFLLQ                                                                      EHAEE LATLQREHARSQQKM ALLESR KN
Sbjct:  985 GDVMQALDQKQKHVPYRNSKLTFLLQDALGGNSRTAMVVTVCPTTLNVDETLFALQFATRARNISLGPAHKNVGAKNLLEEGKDLRAKLREAGRKKEHAEEALATLQREHARSQQKMGALLESRVKN 1111
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BLAST of mRNA_F-serratus_M_contig6982.18099.1 vs. uniprot
Match: A0A7S0SW10_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SW10_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 8.460e-7
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 GDVMQALDQKQKHVPYRNSKLTFLLQE 81
            GDV++ALDQK KH+PYRNSKLTFLLQ+
Sbjct:   80 GDVLEALDQKSKHIPYRNSKLTFLLQD 106
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BLAST of mRNA_F-serratus_M_contig6982.18099.1 vs. uniprot
Match: A0A482SPL2_9ARCH (Kinesin motor domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPL2_9ARCH)

HSP 1 Score: 52.0 bits (123), Expect = 2.990e-6
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:    1 GDVMQALDQKQKHVPYRNSKLTFLLQ 78
            GDVM+ALDQK KH+PYRNSKLTFLLQ
Sbjct:  202 GDVMEALDQKNKHIPYRNSKLTFLLQ 227
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BLAST of mRNA_F-serratus_M_contig6982.18099.1 vs. uniprot
Match: A0A485KTK0_9STRA (Aste57867_11652 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTK0_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 7.010e-5
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 GDVMQALDQKQKHVPYRNSKLTFLLQE 81
            GDVM+ALD+KQ HVPYRNSKLT+ LQ+
Sbjct:  733 GDVMEALDKKQSHVPYRNSKLTYALQD 759
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BLAST of mRNA_F-serratus_M_contig6982.18099.1 vs. uniprot
Match: A0A6A4Z165_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z165_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 9.540e-5
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 GDVMQALDQKQKHVPYRNSKLTFLLQE 81
            GDVM+ALD+KQ HVPYRNSKLT+ LQ+
Sbjct:  725 GDVMEALDKKQAHVPYRNSKLTYALQD 751
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BLAST of mRNA_F-serratus_M_contig6982.18099.1 vs. uniprot
Match: A0A6G0XKQ1_9STRA (Kinesin motor domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKQ1_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 9.590e-5
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 GDVMQALDQKQKHVPYRNSKLTFLLQE 81
            GDVM+ALD+KQ HVPYRNSKLT+ LQ+
Sbjct:  726 GDVMEALDKKQTHVPYRNSKLTYALQD 752
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BLAST of mRNA_F-serratus_M_contig6982.18099.1 vs. uniprot
Match: W4GN09_9STRA (Kinesin motor domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GN09_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 9.590e-5
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    1 GDVMQALDQKQKHVPYRNSKLTFLLQE 81
            GDVM+ALD+KQ HVPYRNSKLT+ LQ+
Sbjct:  726 GDVMEALDKKQAHVPYRNSKLTYALQD 752
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6982.18099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FTD0_ECTSI9.200e-1342.52Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KBN6_9PHAE9.220e-1342.52Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A7S0SW10_9STRA8.460e-781.48Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A482SPL2_9ARCH2.990e-688.46Kinesin motor domain-containing protein (Fragment)... [more]
A0A485KTK0_9STRA7.010e-577.78Aste57867_11652 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A4Z165_9STRA9.540e-577.78Kinesin-like protein (Fragment) n=1 Tax=Aphanomyce... [more]
A0A6G0XKQ1_9STRA9.590e-577.78Kinesin motor domain-containing protein n=1 Tax=Ap... [more]
W4GN09_9STRA9.590e-577.78Kinesin motor domain-containing protein n=9 Tax=Ap... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6982contigF-serratus_M_contig6982:6747..9534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue5.3e-09
Seed eggNOG ortholog2880.D7FTD0
KEGG koko:K10406
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size175
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6982.18099.1prot_F-serratus_M_contig6982.18099.1Fucus serratus malepolypeptideF-serratus_M_contig6982 6756..9534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932132.5835545-UTR-F-serratus_M_contig6982:6746..67551622932132.5835545-UTR-F-serratus_M_contig6982:6746..6755Fucus serratus maleUTRF-serratus_M_contig6982 6747..6755 +
1690964163.7556186-UTR-F-serratus_M_contig6982:6746..67551690964163.7556186-UTR-F-serratus_M_contig6982:6746..6755Fucus serratus maleUTRF-serratus_M_contig6982 6747..6755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932132.5992525-CDS-F-serratus_M_contig6982:6755..68241622932132.5992525-CDS-F-serratus_M_contig6982:6755..6824Fucus serratus maleCDSF-serratus_M_contig6982 6756..6824 +
1690964163.7720296-CDS-F-serratus_M_contig6982:6755..68241690964163.7720296-CDS-F-serratus_M_contig6982:6755..6824Fucus serratus maleCDSF-serratus_M_contig6982 6756..6824 +
1622932132.616949-CDS-F-serratus_M_contig6982:9438..95341622932132.616949-CDS-F-serratus_M_contig6982:9438..9534Fucus serratus maleCDSF-serratus_M_contig6982 9439..9534 +
1690964163.7812173-CDS-F-serratus_M_contig6982:9438..95341690964163.7812173-CDS-F-serratus_M_contig6982:9438..9534Fucus serratus maleCDSF-serratus_M_contig6982 9439..9534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6982.18099.1

>prot_F-serratus_M_contig6982.18099.1 ID=prot_F-serratus_M_contig6982.18099.1|Name=mRNA_F-serratus_M_contig6982.18099.1|organism=Fucus serratus male|type=polypeptide|length=55bp
MQALDQKQKHVPYRNSKLTFLLQEHAEEVLATLQREHARSQQKMAALLES
RAKNS
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mRNA from alignment at F-serratus_M_contig6982:6747..9534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6982.18099.1 ID=mRNA_F-serratus_M_contig6982.18099.1|Name=mRNA_F-serratus_M_contig6982.18099.1|organism=Fucus serratus male|type=mRNA|length=2788bp|location=Sequence derived from alignment at F-serratus_M_contig6982:6747..9534+ (Fucus serratus male)
GGCGACGTGATGCAGGCGCTGGACCAGAAGCAGAAGCACGTGCCCTACCG
GAACTCCAAGCTGACCTTCCTGCTACAGGTATTCTAGTGTAAAGTGCAAT
GCTGTAATTGTAAAATACTTGACTGGTACTGTACCTCGTGTACTCTAGTT
TTTTTGTGTAGCTGTCCATACAGTAGTCTCTTGTTGTTTATAAAAGGTGC
TTAGTACTTCGTACTTGATATCAGTAGTTTATATAGTATGAAGCATGTAG
TAATAGTGTATCTGCTGTGATGTGCACTACAGTATCGTTAATTATAGCTT
TTTGTGTATAGAGCCAGAATGTATATGCAGGTATATTTCATACCAGTATA
TTTTAGCGGGAAGTATGCAGCAAAGTACAAGTAATATGGTATACCCTGAT
AGACCCTATTTTGTGTAGCGTCAACTTGTTGTAGCGTAGTGTGCGGTTTG
TAGTTAGGCGAGGTTTGCATGGGTGGTCCCAGCTTTCCTTTCGAGTATCC
AACACCATATTATAGTATCATAGCTCTAGCACCCCCCTCCTCCTCCTCAT
CCCCACGGAGGTGTAGGTCGGTCTAGACCTCCCCGTAATACTATTAATAG
TACTTGGGTCCCACGAAGCATGGTGCTTTCCGCAGAGTCTAATTGGACTT
CCAAAACTATAATACTTACACTTGTATATAATTACAAACAGGGGCCAAAT
CAGTAAGTCGCGACAACAGTTTATAACAGTATATGATAGTGTTATGTTGG
GTAGTAACAAGTACCGGTAAGGGCTAGTGCCAGGCTCAAAACAAATTTCT
CATGCAAAAAACGCCTCGGTTTCTACTTGTAAGAATCTAGACTATGCCCC
CACGCCCTCGTCCCTCTTCCAGGACGCTCTTGGGGGAAACTCGAGAACCG
CCATGGTGGTGACCGTGTGCCCAACGACGCTGAACGTGGACGAGACGCTG
TTTGCTCTACAGTTCGCCGCTCGAGCCCGCAACGTCAGCGTCGTTGGGCA
CACGGTCACCACCATGGCGGTTCTCGAGTTTCCCCCAAGAGCGTCCTGGA
AGAGGGACGAGGGCGTGGGGGCATAGTCTAGATTCTTACAAGTAGAAACC
GAGGCGTTTTTTGCATGAGAAATTTGTTTTGAGCCTGGCACTAGCCCTTA
CCGGTACTTGTTACTACCCAACATAACACTATCATATACTGTTATAAACT
GTTGTCGCGACTTACTGATTTGGCCCCTATTTGTAATTATATACAAGTGT
AAGTATTATAGTTTTGGAAGTCCAATTAGACTCTGCGGAAAGAATCTGTT
GGAGGAGACTAAGGAGCTGAGGGTGAAGCTTCGAGAGGCCGACCGGAAGA
AGGTGCAGTATTCCCCACAATAATTTGTATATACCTTGAATTAATAGGTG
AGGCTGTTCACGTCGTGCTTTTTACTTGAAACGTTAAATCGTTCTACGTA
CTTGGTATTATATTATATGAAGTATACTTGTATGAGTTAAGATATCGCGC
AAAGTATCTGTTAAATCATTTTCTTTTCTTTTGACCGCTGTACAGATACA
CTTGACAGGTACAATTGATATATGTATACACTTTATAGATACACTTGACA
GATTATTATGCATATAAATAAATACCGGTACACTGTATAGTGTTGTAGGT
TCTACATAAAATTGCGTGTCACCTTCTGAGTTAGAGAATCTCGATAAAAA
AACTTGGCTTCTGAAAGTACAAATTGTTTTGTGTCTAATAATAGTAAAAC
GGAAAGTTTATCGTTTGTAATGCTGGTAAGGTGTACTGCTCTGCTCTGCT
CTGCTCTGCTCTGTGTAGGGAGTGCGGAAAGGGGTAGACTAACTCGTGAT
CCTACAGCACGTTGAGTAACCATCACCCTATCGATAGAAGCGACTCGATT
CAACTCTCCCCGGACGGTGTGGGTCCTCGAAAGGTTTCGATAGAAGAGGC
GTTCACAACTTGGTACAATTTTTTAGGAAGCTTTTATGATTTCAAAAGTG
TGCTACGTACCACCTACAGCAGCATCATACAGAAGTCGGTAACAAACCGC
GAACACGGGTTATTATGTAGGTTATTATATAGGTTATTTAGTCTGGAGGT
GTCGCTGGAGTTGAAAAACACTTGAGTACAAAGGAAATGTCAGTATTGAT
TTTATTTCAACACGACGTGTTGAACACATGCACACGTTTTTATTTTCAAA
AATGATTTTACTGTATCTAAAGGTTTTTATATTGCATGTTAAAAATAAAA
AAAATATTGATATTGATAGTACGGACCGGTACGAGTACATACACAACGTA
ATAGTTTTGTCAACGCACTATCAGTACGTACAGAACATGGGATGTTGCAT
TATTTGTGTGTTGTACTGTTGTATTTGCCGCAAGTTTTTTTTTTCACTCG
GGGGCTCTATAATAGTCTCCCCCACCCCTCGACTTCATCTTCACGTATTT
GTGAGGCTTAGGGAAGCTCCCCCCCCCTTCCCCCTTATTTCTGTGCTTTC
TTTCATCCCCTTGTTTTGAGCCCTGTTTTTCAACCTTTTTTTCGAACACC
CTTTCGTCAGCCTTTCCTCGATTCCTATTTAATCACGAGTCGTCCCCCCC
CCCCTGTCTTTCAGCATTTTCCCCAACCTTTATGGAAACCCTTTTTTCAT
GACTTTTTTCTCACCCGTCCCTTTTCGTTGTTTACACTTCAGGAGCACGC
GGAAGAGGTGCTAGCCACTCTCCAGAGGGAACACGCACGCTCTCAACAGA
AAATGGCTGCGCTTCTGGAGTCTAGGGCGAAAAACTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6982:6747..9534+

>mRNA_F-serratus_M_contig6982.18099.1 ID=mRNA_F-serratus_M_contig6982.18099.1|Name=mRNA_F-serratus_M_contig6982.18099.1|organism=Fucus serratus male|type=CDS|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig6982:6747..9534+ (Fucus serratus male)
ATGCAGGCGCTGGACCAGAAGCAGAAGCACGTGCCCTACCGGAACTCCAA
GCTGACCTTCCTGCTACAGATGCAGGCGCTGGACCAGAAGCAGAAGCACG
TGCCCTACCGGAACTCCAAGCTGACCTTCCTGCTACAGGAGCACGCGGAA
GAGGTGCTAGCCACTCTCCAGAGGGAACACGCACGCTCTCAACAGAAAAT
GGCTGCGCTTCTGGAGTCTAGGGCGAAAAACTCGGAGCACGCGGAAGAGG
TGCTAGCCACTCTCCAGAGGGAACACGCACGCTCTCAACAGAAAATGGCT
GCGCTTCTGGAGTCTAGGGCGAAAAACTCG
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