mRNA_F-serratus_M_contig6982.18098.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6982.18098.1
Unique NamemRNA_F-serratus_M_contig6982.18098.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6982.18098.1 vs. uniprot
Match: D7FTD0_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD0_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.500e-29
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:   79 QVEPLALSAADGMNACIFAYGQTGSGKTHTMIGDARGGEMAGVSYRTMNKLFQVLELRRSQQ 264
            QVEPLALSAADGMNACIFAYGQTGSGKTHTMIGDA+GGEMAG+SYRTMNKLFQVLELR+ QQ
Sbjct:  439 QVEPLALSAADGMNACIFAYGQTGSGKTHTMIGDAKGGEMAGISYRTMNKLFQVLELRQRQQ 500
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BLAST of mRNA_F-serratus_M_contig6982.18098.1 vs. uniprot
Match: A0A6H5KBN6_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.520e-29
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:   79 QVEPLALSAADGMNACIFAYGQTGSGKTHTMIGDARGGEMAGVSYRTMNKLFQVLELRRSQQ 264
            QVEPLALSAADGMNACIFAYGQTGSGKTHTMIGDA+GGEMAG+SYRTMNKLFQVLELR+ QQ
Sbjct:  762 QVEPLALSAADGMNACIFAYGQTGSGKTHTMIGDAKGGEMAGISYRTMNKLFQVLELRQRQQ 823
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BLAST of mRNA_F-serratus_M_contig6982.18098.1 vs. uniprot
Match: A0A8J9X6M0_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X6M0_PHATR)

HSP 1 Score: 77.8 bits (190), Expect = 3.020e-16
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   82 VEPLALSAADGMNACIFAYGQTGSGKTHTMIGDARGGEMAGVSYRTMNKLFQVLELRRSQQ 264
            VEPLALS  DG NACIFAYGQTGSGKT TM G     +  G+SYRT+ K+F +L+LR  QQ
Sbjct:   70 VEPLALSVVDGFNACIFAYGQTGSGKTFTMEGTEENSQY-GISYRTIQKIFHLLQLRAQQQ 129
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BLAST of mRNA_F-serratus_M_contig6982.18098.1 vs. uniprot
Match: A0A7S0SW04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SW04_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.340e-15
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   82 VEPLALSAADGMNACIFAYGQTGSGKTHTMIGDARGGEMAGVSYRTMNKLFQVLELRRSQQV 267
            +EPL LS  DG NACIFAYGQTGSGKT+TM G    G+  GVSYRT++K+F++LELR+S+ +
Sbjct:  261 IEPLVLSVVDGYNACIFAYGQTGSGKTYTMNGY---GKEYGVSYRTLHKIFELLELRKSKAI 319
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BLAST of mRNA_F-serratus_M_contig6982.18098.1 vs. uniprot
Match: A0A1Z5JLQ2_FISSO (Kinesin family member C2/C3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLQ2_FISSO)

HSP 1 Score: 79.0 bits (193), Expect = 5.200e-15
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   82 VEPLALSAADGMNACIFAYGQTGSGKTHTMIGDARGGEMAGVSYRTMNKLFQVLELRRSQQ 264
            VEPLALS  DG NACIFAYGQTGSGKT TM G    G+  G+SYRT+ K+F +L LR  QQ
Sbjct:  763 VEPLALSVVDGFNACIFAYGQTGSGKTFTMEGVRENGQF-GISYRTIQKIFHLLNLRAQQQ 822
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BLAST of mRNA_F-serratus_M_contig6982.18098.1 vs. uniprot
Match: A0A7S1VET9_9STRA (Kinesin-like protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VET9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 9.570e-15
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   82 VEPLALSAADGMNACIFAYGQTGSGKTHTMIGDARGGEMAGVSYRTMNKLFQVLELRRSQQ 264
            VEPLALS  DG NACIFAYGQTGSGKT+TM G    G   G+SYRT+ K+F +L LR  QQ
Sbjct:  426 VEPLALSVVDGYNACIFAYGQTGSGKTYTMEGVESNGNY-GISYRTIQKIFHLLNLRTQQQ 485
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BLAST of mRNA_F-serratus_M_contig6982.18098.1 vs. uniprot
Match: A0A7R9ZCJ7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZCJ7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.500e-13
Identity = 39/61 (63.93%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   82 VEPLALSAADGMNACIFAYGQTGSGKTHTMIGDARGGEMAGVSYRTMNKLFQVLELRRSQQ 264
            VE LALS  DG NACIFAYGQTGSGKT TM G   G +  GVSYRT+ KLF +L  R+  Q
Sbjct:  932 VEQLALSVVDGYNACIFAYGQTGSGKTFTMEGTPEG-KQYGVSYRTIQKLFGLLNFRQKMQ 991
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BLAST of mRNA_F-serratus_M_contig6982.18098.1 vs. uniprot
Match: A0A7S3V5Y7_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5Y7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.630e-12
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   82 VEPLALSAADGMNACIFAYGQTGSGKTHTMIGDARGGEMAGVSYRTMNKLFQVLELRRSQQ 264
            VEPLALS  DG NACIFAYGQTGSGKT+TM G    G   G+S+RT+ K+F +L  R  +Q
Sbjct:  785 VEPLALSVVDGYNACIFAYGQTGSGKTYTMEGSQ--GIERGISFRTVEKVFNLLNYRVMKQ 843
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BLAST of mRNA_F-serratus_M_contig6982.18098.1 vs. uniprot
Match: A0A022RCY9_ERYGU (Kinesin motor domain-containing protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RCY9_ERYGU)

HSP 1 Score: 67.8 bits (164), Expect = 4.310e-11
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   79 QVEPLALSAADGMNACIFAYGQTGSGKTHTMIGDARGGEMAGVSYRTMNKLFQVLELRRS 258
            +  PLA+S  DG N C+FAYGQTG+GKT TM G     E  GV+YRT+ KLF ++E R++
Sbjct:  493 ETAPLAISVLDGFNVCVFAYGQTGTGKTFTMEGT---NEARGVNYRTLEKLFDIIEERKN 549
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BLAST of mRNA_F-serratus_M_contig6982.18098.1 vs. uniprot
Match: A0A2G9GCF8_9LAMI (Kinesin (KAR3 subfamily) n=2 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GCF8_9LAMI)

HSP 1 Score: 67.8 bits (164), Expect = 4.310e-11
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   79 QVEPLALSAADGMNACIFAYGQTGSGKTHTMIGDARGGEMAGVSYRTMNKLFQVLELRRS 258
            +  PLA+S  DG N CIFAYGQTG+GKT TM G     E  GV+YRT+ KLF ++E R++
Sbjct:  547 ETAPLAISVLDGYNVCIFAYGQTGTGKTFTMEGT---NEARGVNYRTLEKLFDIIEERKN 603
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6982.18098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FTD0_ECTSI2.500e-2993.55Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KBN6_9PHAE2.520e-2993.55Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A8J9X6M0_PHATR3.020e-1663.93Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A7S0SW04_9STRA2.340e-1562.90Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A1Z5JLQ2_FISSO5.200e-1565.57Kinesin family member C2/C3 n=2 Tax=Fistulifera so... [more]
A0A7S1VET9_9STRA9.570e-1565.57Kinesin-like protein n=1 Tax=Grammatophora oceanic... [more]
A0A7R9ZCJ7_9STRA5.500e-1363.93Hypothetical protein (Fragment) n=2 Tax=Pseudictyo... [more]
A0A7S3V5Y7_9STRA2.630e-1260.66Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A022RCY9_ERYGU4.310e-1153.33Kinesin motor domain-containing protein n=2 Tax=Er... [more]
A0A2G9GCF8_9LAMI4.310e-1155.00Kinesin (KAR3 subfamily) n=2 Tax=Handroanthus impe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6982contigF-serratus_M_contig6982:2958..6032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog2880.D7FTD0
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
Ec32 ortholog descriptionKinesin-like protein
Ec32 orthologEc-27_001770.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size297
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6982.18098.1prot_F-serratus_M_contig6982.18098.1Fucus serratus malepolypeptideF-serratus_M_contig6982 2958..6032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932132.5004086-CDS-F-serratus_M_contig6982:2957..30381622932132.5004086-CDS-F-serratus_M_contig6982:2957..3038Fucus serratus maleCDSF-serratus_M_contig6982 2958..3038 +
1690964163.7142282-CDS-F-serratus_M_contig6982:2957..30381690964163.7142282-CDS-F-serratus_M_contig6982:2957..3038Fucus serratus maleCDSF-serratus_M_contig6982 2958..3038 +
1622932132.5183616-CDS-F-serratus_M_contig6982:4085..42681622932132.5183616-CDS-F-serratus_M_contig6982:4085..4268Fucus serratus maleCDSF-serratus_M_contig6982 4086..4268 +
1690964163.7307053-CDS-F-serratus_M_contig6982:4085..42681690964163.7307053-CDS-F-serratus_M_contig6982:4085..4268Fucus serratus maleCDSF-serratus_M_contig6982 4086..4268 +
1622932132.5370185-CDS-F-serratus_M_contig6982:5999..60321622932132.5370185-CDS-F-serratus_M_contig6982:5999..6032Fucus serratus maleCDSF-serratus_M_contig6982 6000..6032 +
1690964163.7414362-CDS-F-serratus_M_contig6982:5999..60321690964163.7414362-CDS-F-serratus_M_contig6982:5999..6032Fucus serratus maleCDSF-serratus_M_contig6982 6000..6032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6982.18098.1

>prot_F-serratus_M_contig6982.18098.1 ID=prot_F-serratus_M_contig6982.18098.1|Name=mRNA_F-serratus_M_contig6982.18098.1|organism=Fucus serratus male|type=polypeptide|length=99bp
ADSKAELRASNGRLKDASSKVLENTYQVEPLALSAADGMNACIFAYGQTG
SGKTHTMIGDARGGEMAGVSYRTMNKLFQVLELRRSQQVPGLTYVNVTS
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mRNA from alignment at F-serratus_M_contig6982:2958..6032+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6982.18098.1 ID=mRNA_F-serratus_M_contig6982.18098.1|Name=mRNA_F-serratus_M_contig6982.18098.1|organism=Fucus serratus male|type=mRNA|length=3075bp|location=Sequence derived from alignment at F-serratus_M_contig6982:2958..6032+ (Fucus serratus male)
GCGGACTCGAAGGCGGAATTGCGCGCTTCCAACGGGCGCCTCAAGGACGC
TTCGTCAAAGGTGCTGGAAAATACATACCAGGTATATAGACTATATATAT
ATATATATTTATCTAACTTTTGAAGTAGAACACTTTTTAATGTTTAACGT
TGTTATCATTATTATACCAGTGTTGTCGAGTAACGCCTATTTATCACGTG
GAAAACACTGACTTATTTCGCTGACTCGCGCCACTATCTGGGATAGCTGT
GGCCACCTTGGAGGTAGGCCCCGCTGTATCGTTGTATCGCTGTATGACTG
TTACAATAGTTGCAGAGGTGGGTGAAGTCTTGCGTTTCCAGACCATTTCC
GTTTTACGGTATTCGTAGAACTGTACACGGCCAAAGTACGTCAATTTTAA
AAGTGCGGCGGGATTAGGGGACCCCAGGGCATATATCCTGTGAGTGTCGT
GCAAACCCACATCTAGGGTACAGGCCACCAAAGACGCATCTCACCATCAT
CTCTGGCGAGGTCCCGCGTTCAGAAAACCAAGCAATGGTTTCCAAGCACC
ACCCCGAAATTCATTTTTTTTGTCGCGAATCGAGCTGGTATGTACAGGGA
GGAACAGCTCAAACACCCTGACTTGAGCGACGAAGATTAGGCCCTTGGCG
ATTTAATTCAATGCGACATGGCAGCAGGTAGCCTTGGCATGAATGGGCGC
GTGTGTGTGCGCGAAAGACCCCGGTGCGATTATTGCAATGTCGAAGAGTA
TTTGGTATCATGACATTGCTACCTGCCTTTCAAGTGTTGCTGTAAGTTAC
TTGAAAATAGACTTGACATCATCATGGTGCTCGTCGCCCGAGTCAAGCAG
TGTTACCCTCTCAGATCACTAGCAATAGTGCATACTGGTAGTGCATAGAA
AACCAGGCCTCTTATTCTGGCATCCGTAGCAGGAAACGATACATGGTACT
GTACCTCCAGTGTTACATCTTTAGAAGCACTGTTGTATAAACCATACTTA
GGTTTTCGTAATAAGTACCATTGATCCCTTAACATTCCTTGAGAGGAGGA
GCAAAACGCGTGGAGGCATATCCTTCTTGGTGGTTACCGTTACCGGCGTG
TGATTGTGATTGTTTTCGTTTTTTTCAGGTGGAACCTCTGGCCCTCTCGG
CAGCGGATGGTATGAATGCATGCATCTTTGCTTACGGCCAGACCGGATCA
GGTAAGACTCACACGATGATCGGAGACGCTAGAGGGGGGGAAATGGCCGG
GGTGAGCTACCGCACCATGAACAAGCTCTTCCAAGTTCTGGAACTCCGAC
GAAGTCAGCAGGTGATTGTGGCCACCCATCAGTTTCCTTTCCATCGCTGT
GGGTACTGTACCTATTGTAGCTATTAATATATAGAGCTAATTTGCTTCGT
TTTCTCAGAGGGGGGAGGAAGGGGATTTGTCTTCATCTGGCAGTTTATAC
TGAATTTATACTGAATATTGTCCCTTCATTCTGGCAATGTTATAATCAGA
TGAGCTGCTTTGTGTCATCCCCCTCTCCCCCCCTTTTTTTCATTCGTTTT
TTGTTGTACTTACTTTTCTTTTCTTTTTTCTCGACCACGTGCTTGGCTCT
ATTCAGTGTCGAAATATTCAGACGAAATTACGTACTGTACTAATTGTATT
GTACTAACTGTATTGCACTGTACTGTACTGTACTGTGCTGTACTGTACTG
TATTGTACTGTACTGGAATCAGCAAGTGTCAGCGTCGCACGGCACTTTCC
CCCCTCCTTTAATCAATACTGAAGATGAAGTAATAGACTAGATATTTGTA
TGTATCGCCGGTACTTTCAACATGCTATAACCACTTCTTACCATTAGCGG
GTGTGAGAAAGAGAGGCGCATATTAATTGGTCTGTGGTCAACTGCCAAGG
CAGCCCCCGTTTGGAACTACCTTGGAGTTTACTGGCCCTGTGCCGGCAGA
CTCTCGGCAGTGAACGCCATCGGTACGCAATTGCATGACCCGATAAATTC
AAATTCGGGGCTGACCCGATGGCGTATGGCGGCTTAAATAAATAAATGGA
CGCCGCCGCGGATCTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGT
CAGCCTGAGTATGGAAATGAGCAGGCTGGCGCGTGACGAGACTGCCGAAC
CCGTTTCGCGAGATCAAATTAGACTAAATTCTCAGGCGCGAGAGGGAAAA
ATCAATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGACAGCCTTACCC
GGTTGATCCATAATCTTGCTGTATGTGTGACTATACAGTACAGTACAGTG
TGACCCGGCACATACGGAGAGTACAAGTTGATCCATACTCTTGCTGTATG
TATGCCCTCTAGCTTATTCGAAGGTACACAAGATGCTACCGGCGTGCATG
ACATACATATCTTTACCGAGTATAAAAAACATATACCAGGTATGTTGGAT
ACTGGAAAGATATGTGATGTAGACTATGCCCGTAGGATCTTGTGTACAGT
CAGTATCTTGGCGAAGTACTAATAATATTAGACGGATATGTAACGTAATT
TAATGACTGAGTGGTCTAGTAGGTAACCTGCATACCGGTATCTGCTAGTG
CGGAAGTCGTGAGTTCGATTCTTCGCTTAATCAGAATTTGTGTTTAAAGA
AAAATGTTATTTCTTTCGTAACGGAAAGAGTGGAAACGCAAGTAAGTAAA
ATTCAACCATTGGTTGACGAGTTGTGAGAGTGCTGAACTTGCATCGCGAT
AAAAATGGTAAGGCGTGAACCGGGGAGAGATGGGAAGATCCTTTGTTACC
ACAGGCAGGATGGTAATTAGAGGTCCATCGGCTATAAGTGTGATGCAATG
TATAGGATCGTGCCGGTGGGACGACTCCAAGGGCGAACACCTCTCCTGAG
AACACGTCACGGATATTTCAGGGAGTGTATCAACTCCCCCCCCCCTAATC
CCGATCCACAAAAACGCCACCCATTTACAGCTTGGCAAATCGTTATTTTA
TTATTTAACTGTTTTTTTTCATGTCGGTCACACGTTTTTTAGGTACCTGG
GCTCACGTACGTGAACGTTACGAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6982:2958..6032+

>mRNA_F-serratus_M_contig6982.18098.1 ID=mRNA_F-serratus_M_contig6982.18098.1|Name=mRNA_F-serratus_M_contig6982.18098.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig6982:2958..6032+ (Fucus serratus male)
GCGGACTCGAAGGCGGAATTGCGCGCTTCCAACGGGCGCCTCAAGGACGC
TTCGTCAAAGGTGCTGGAAAATACATACCAGGCGGACTCGAAGGCGGAAT
TGCGCGCTTCCAACGGGCGCCTCAAGGACGCTTCGTCAAAGGTGCTGGAA
AATACATACCAGGTGGAACCTCTGGCCCTCTCGGCAGCGGATGGTATGAA
TGCATGCATCTTTGCTTACGGCCAGACCGGATCAGGTAAGACTCACACGA
TGATCGGAGACGCTAGAGGGGGGGAAATGGCCGGGGTGAGCTACCGCACC
ATGAACAAGCTCTTCCAAGTTCTGGAACTCCGACGAAGTCAGCAGGTGGA
ACCTCTGGCCCTCTCGGCAGCGGATGGTATGAATGCATGCATCTTTGCTT
ACGGCCAGACCGGATCAGGTAAGACTCACACGATGATCGGAGACGCTAGA
GGGGGGGAAATGGCCGGGGTGAGCTACCGCACCATGAACAAGCTCTTCCA
AGTTCTGGAACTCCGACGAAGTCAGCAGGTACCTGGGCTCACGTACGTGA
ACGTTACGAGCGTACCTGGGCTCACGTACGTGAACGTTACGAGC
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