mRNA_F-serratus_M_contig6962.18068.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6962.18068.1
Unique NamemRNA_F-serratus_M_contig6962.18068.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6962.18068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6962contigF-serratus_M_contig6962:9186..9807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size622
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932125.0187087-UTR-F-serratus_M_contig6962:9185..92311622932125.0187087-UTR-F-serratus_M_contig6962:9185..9231Fucus serratus maleUTRF-serratus_M_contig6962 9186..9231 +
1690964159.9348752-UTR-F-serratus_M_contig6962:9185..92311690964159.9348752-UTR-F-serratus_M_contig6962:9185..9231Fucus serratus maleUTRF-serratus_M_contig6962 9186..9231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932125.0319288-CDS-F-serratus_M_contig6962:9231..98071622932125.0319288-CDS-F-serratus_M_contig6962:9231..9807Fucus serratus maleCDSF-serratus_M_contig6962 9232..9807 +
1690964159.9516814-CDS-F-serratus_M_contig6962:9231..98071690964159.9516814-CDS-F-serratus_M_contig6962:9231..9807Fucus serratus maleCDSF-serratus_M_contig6962 9232..9807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6962.18068.1prot_F-serratus_M_contig6962.18068.1Fucus serratus malepolypeptideF-serratus_M_contig6962 9232..9807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6962.18068.1

>prot_F-serratus_M_contig6962.18068.1 ID=prot_F-serratus_M_contig6962.18068.1|Name=mRNA_F-serratus_M_contig6962.18068.1|organism=Fucus serratus male|type=polypeptide|length=192bp
MPPIPFYEYMQKMGCKSEEVSRALEPYIHGNKNSFSKDAAFNLMFETDAE
RTRRHKSFEIAEVVAAHHLSNMKTVLMHSELARWRTLHGFDRSKPVVRDD
ILFSPQEYTAYMLSEVDELRDAIFLSPLERRRKRMERFARELQQGKVNME
LTDAEHESIKEYLEKRSRDEAVQAEVNATPVQIFVQICTTYA
back to top

mRNA from alignment at F-serratus_M_contig6962:9186..9807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6962.18068.1 ID=mRNA_F-serratus_M_contig6962.18068.1|Name=mRNA_F-serratus_M_contig6962.18068.1|organism=Fucus serratus male|type=mRNA|length=622bp|location=Sequence derived from alignment at F-serratus_M_contig6962:9186..9807+ (Fucus serratus male)
CCCGTACGGACCGAAGGAGTTGGGGCTAAAGAAGACATTGTGAGTCATGC
CTCCAATACCTTTCTATGAATACATGCAGAAAATGGGGTGCAAGAGTGAA
GAGGTATCTAGGGCTCTTGAACCTTACATCCACGGAAATAAGAACTCCTT
TTCTAAGGATGCGGCATTTAATCTCATGTTCGAGACGGATGCGGAACGGA
CGCGCCGGCACAAATCATTTGAGATCGCCGAAGTTGTTGCTGCCCACCAT
CTGAGTAACATGAAGACCGTCCTCATGCACTCTGAGCTGGCAAGATGGAG
AACGTTACATGGTTTTGACCGTTCTAAGCCTGTAGTACGCGATGATATTC
TTTTCTCACCTCAAGAGTACACCGCCTATATGTTAAGTGAGGTCGACGAG
CTGCGAGACGCGATCTTCCTTTCCCCGTTAGAAAGGAGGCGAAAAAGGAT
GGAAAGGTTTGCTCGTGAACTTCAGCAAGGAAAGGTAAACATGGAACTCA
CGGACGCAGAACATGAATCGATCAAGGAGTACCTGGAAAAGCGGAGTCGC
GATGAGGCGGTTCAGGCAGAGGTAAATGCTACGCCCGTTCAAATCTTCGT
ACAAATCTGCACGACATATGCA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6962:9186..9807+

>mRNA_F-serratus_M_contig6962.18068.1 ID=mRNA_F-serratus_M_contig6962.18068.1|Name=mRNA_F-serratus_M_contig6962.18068.1|organism=Fucus serratus male|type=CDS|length=1152bp|location=Sequence derived from alignment at F-serratus_M_contig6962:9186..9807+ (Fucus serratus male)
ATGCCTCCAATACCTTTCTATGAATACATGCAGAAAATGGGGTGCAAGAG
TGAAGAGGTATCTAGGGCTCTTGAACCTTACATCCACGGAAATAAGAACT
CCTTTTCTAAGGATGCGGCATTTAATCTCATGTTCGAGACGGATGCGGAA
CGGACGCGCCGGCACAAATCATTTGAGATCGCCGAAGTTGTTGCTGCCCA
CCATCTGAGTAACATGAAGACCGTCCTCATGCACTCTGAGCTGGCAAGAT
GGAGAACGTTACATGGTTTTGACCGTTCTAAGCCTGTAGTACGCGATGAT
ATTCTTTTCTCACCTCAAGAGTACACCGCCTATATGTTAAGTGAGGTCGA
CGAGCTGCGAGACGCGATCTTCCTTTCCCCGTTAGAAAGGAGGCGAAAAA
GGATGGAAAGGTTTGCTCGTGAACTTCAGCAAGGAAAGGTAAACATGGAA
CTCACGGACGCAGAACATGAATCGATCAAGGAGTACCTGGAAAAGCGGAG
TCGCGATGAGGCGGTTCAGGCAGAGGTAAATGCTACGCCCGTTCAAATCT
TCGTACAAATCTGCACGACATATGCAATGCCTCCAATACCTTTCTATGAA
TACATGCAGAAAATGGGGTGCAAGAGTGAAGAGGTATCTAGGGCTCTTGA
ACCTTACATCCACGGAAATAAGAACTCCTTTTCTAAGGATGCGGCATTTA
ATCTCATGTTCGAGACGGATGCGGAACGGACGCGCCGGCACAAATCATTT
GAGATCGCCGAAGTTGTTGCTGCCCACCATCTGAGTAACATGAAGACCGT
CCTCATGCACTCTGAGCTGGCAAGATGGAGAACGTTACATGGTTTTGACC
GTTCTAAGCCTGTAGTACGCGATGATATTCTTTTCTCACCTCAAGAGTAC
ACCGCCTATATGTTAAGTGAGGTCGACGAGCTGCGAGACGCGATCTTCCT
TTCCCCGTTAGAAAGGAGGCGAAAAAGGATGGAAAGGTTTGCTCGTGAAC
TTCAGCAAGGAAAGGTAAACATGGAACTCACGGACGCAGAACATGAATCG
ATCAAGGAGTACCTGGAAAAGCGGAGTCGCGATGAGGCGGTTCAGGCAGA
GGTAAATGCTACGCCCGTTCAAATCTTCGTACAAATCTGCACGACATATG
CA
back to top