mRNA_F-serratus_M_contig6960.18067.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6960.18067.1
Unique NamemRNA_F-serratus_M_contig6960.18067.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6960.18067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6960contigF-serratus_M_contig6960:9932..10735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size169
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932124.9708638-CDS-F-serratus_M_contig6960:9932..100421622932124.9708638-CDS-F-serratus_M_contig6960:9932..10042Fucus serratus maleCDSF-serratus_M_contig6960 9933..10042 -
1690964159.90895-CDS-F-serratus_M_contig6960:9932..100421690964159.90895-CDS-F-serratus_M_contig6960:9932..10042Fucus serratus maleCDSF-serratus_M_contig6960 9933..10042 -
1622932124.9831152-CDS-F-serratus_M_contig6960:10677..107351622932124.9831152-CDS-F-serratus_M_contig6960:10677..10735Fucus serratus maleCDSF-serratus_M_contig6960 10678..10735 -
1690964159.9192145-CDS-F-serratus_M_contig6960:10677..107351690964159.9192145-CDS-F-serratus_M_contig6960:10677..10735Fucus serratus maleCDSF-serratus_M_contig6960 10678..10735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6960.18067.1prot_F-serratus_M_contig6960.18067.1Fucus serratus malepolypeptideF-serratus_M_contig6960 9933..10735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6960.18067.1

>prot_F-serratus_M_contig6960.18067.1 ID=prot_F-serratus_M_contig6960.18067.1|Name=mRNA_F-serratus_M_contig6960.18067.1|organism=Fucus serratus male|type=polypeptide|length=56bp
WVWPESFIEFIVHLPLHLQGDHTFCSSDCAGAEKHIIVEEDCEGGILPSA
NAAGRV
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mRNA from alignment at F-serratus_M_contig6960:9932..10735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6960.18067.1 ID=mRNA_F-serratus_M_contig6960.18067.1|Name=mRNA_F-serratus_M_contig6960.18067.1|organism=Fucus serratus male|type=mRNA|length=804bp|location=Sequence derived from alignment at F-serratus_M_contig6960:9932..10735- (Fucus serratus male)
TGGGTTTGGCCCGAGTCTTTCATCGAATTTATCGTTCACCTCCCATTGCA
TCTACAAGGTAAAAACGATACTTTTTTCATTATGCGTTTCGCTTTTTTCC
TTGTCGCGTGCAAAAGTAGCCAAGCGCACAAAAATAAATAGCTCACAAAT
GGATGAATGGTGTGGTTGCCTCCCTGTGCACACGTTATCACCACGGTTCC
TGGTCGTTGGGTGTTACTATAGTCAGATTTGTTTGGAACCGTGAGCGTTC
TATAGTTGTGTGCGTGCACACGTACGCCTACACTATATGAGTGGTTCATC
CAATGGGGGGACGGGGATGTCGAAAATGTTTACTCGTTTTGGTAGGGAAC
GGCGCGATAAATAGACCCGGCTACATATATGCCCAACTCCTTGCGGAAAT
GAATTGTATTCGGGGCAAGCTTGCCGACCATGAATACCTGGAAGGTGGGA
CGTCTTGGTGACCACCCCGGGGACGGAATCGACGTACCCCCGCCCCCTCA
ATCGTTGAACGAATCATATACAGTACTCTGGGGGCCAGGCGCATGGGAAC
TGAGTTTTTGGGTCGACGATTTCAGGCCGTCAAAATGCCCCATATCACGT
GCTCCGTATCATTGGGCAACTGTAAAGTGAGAGTCTGTAATACCTTGCAA
AACGTACACCGCCTGCCCCTTTTCTTGCGCGATCTCCTGACAGGAGACCA
CACGTTCTGCTCTTCCGATTGTGCAGGTGCTGAAAAGCATATCATCGTTG
AAGAAGATTGCGAGGGCGGGATTCTGCCGTCCGCCAACGCTGCCGGAAGG
GTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6960:9932..10735-

>mRNA_F-serratus_M_contig6960.18067.1 ID=mRNA_F-serratus_M_contig6960.18067.1|Name=mRNA_F-serratus_M_contig6960.18067.1|organism=Fucus serratus male|type=CDS|length=336bp|location=Sequence derived from alignment at F-serratus_M_contig6960:9932..10735- (Fucus serratus male)
TGGGTTTGGCCCGAGTCTTTCATCGAATTTATCGTTCACCTCCCATTGCA
TCTACAAGTGGGTTTGGCCCGAGTCTTTCATCGAATTTATCGTTCACCTC
CCATTGCATCTACAAGGAGACCACACGTTCTGCTCTTCCGATTGTGCAGG
TGCTGAAAAGCATATCATCGTTGAAGAAGATTGCGAGGGCGGGATTCTGC
CGTCCGCCAACGCTGCCGGAAGGGTCGAGACCACACGTTCTGCTCTTCCG
ATTGTGCAGGTGCTGAAAAGCATATCATCGTTGAAGAAGATTGCGAGGGC
GGGATTCTGCCGTCCGCCAACGCTGCCGGAAGGGTC
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