mRNA_F-serratus_M_contig695.18059.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig695.18059.1
Unique NamemRNA_F-serratus_M_contig695.18059.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig695.18059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig695contigF-serratus_M_contig695:324376..328583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size421
Cds size420
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig695.18059.1prot_F-serratus_M_contig695.18059.1Fucus serratus malepolypeptideF-serratus_M_contig695 324376..328583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932123.0466688-CDS-F-serratus_M_contig695:324375..3245231622932123.0466688-CDS-F-serratus_M_contig695:324375..324523Fucus serratus maleCDSF-serratus_M_contig695 324376..324523 +
1690964158.758111-CDS-F-serratus_M_contig695:324375..3245231690964158.758111-CDS-F-serratus_M_contig695:324375..324523Fucus serratus maleCDSF-serratus_M_contig695 324376..324523 +
1622932123.0710366-CDS-F-serratus_M_contig695:326782..3270301622932123.0710366-CDS-F-serratus_M_contig695:326782..327030Fucus serratus maleCDSF-serratus_M_contig695 326783..327030 +
1690964158.7698324-CDS-F-serratus_M_contig695:326782..3270301690964158.7698324-CDS-F-serratus_M_contig695:326782..327030Fucus serratus maleCDSF-serratus_M_contig695 326783..327030 +
1622932123.0859005-CDS-F-serratus_M_contig695:328559..3285831622932123.0859005-CDS-F-serratus_M_contig695:328559..328583Fucus serratus maleCDSF-serratus_M_contig695 328560..328583 +
1690964158.780862-CDS-F-serratus_M_contig695:328559..3285831690964158.780862-CDS-F-serratus_M_contig695:328559..328583Fucus serratus maleCDSF-serratus_M_contig695 328560..328583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig695.18059.1

>prot_F-serratus_M_contig695.18059.1 ID=prot_F-serratus_M_contig695.18059.1|Name=mRNA_F-serratus_M_contig695.18059.1|organism=Fucus serratus male|type=polypeptide|length=140bp
KSSSHVESTTIILLQQHQLTARCQIFISSPVPSMQPSGEQEGSVANETAD
SEAEAKRRASCERRNTHRLRKIFEWYRPDAPVAGHHFGGDLGKKASETSD
NASSTSTSRASASDCSSLADHERAASWGPFLAEQDGSGQQ
back to top

mRNA from alignment at F-serratus_M_contig695:324376..328583+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig695.18059.1 ID=mRNA_F-serratus_M_contig695.18059.1|Name=mRNA_F-serratus_M_contig695.18059.1|organism=Fucus serratus male|type=mRNA|length=4208bp|location=Sequence derived from alignment at F-serratus_M_contig695:324376..328583+ (Fucus serratus male)
AAAAGTTCAAGCCACGTGGAAAGCACAACAATAATCCTTCTCCAACAACA
TCAACTAACAGCCCGTTGCCAAATTTTCATCAGCTCCCCAGTACCGTCGA
TGCAGCCGAGTGGAGAGCAGGAAGGGTCTGTGGCCAACGAAACAGCAGGT
TTGCTTGCGTACTACGTCGTTACTGCTGCTGCTGCTGCTGCTTATCTGCT
GCTGCTGTAAACTGAAGAAAACATGGACGTTGCCGGTTGCGTATACAGAG
TACGAGTAGCATTTTCTGTTTATAATTATTACTTAAAGTATATACGTATA
TATATGATGTTCCAACCATTTGTTGTTCTTCGCTCAAGCCTTCGTTACCT
GTAGGAGTCAGTTGAACACGTTCTCGCGAGGAGCTGTGCGCGACTGCACC
TCGCTGCTGTTGTAGTATTGGAAAGCTATTCGCGGGTGATTCTCGGGGTT
GCTCGGCCCGATCCATGGCTATAGCATGGAAAGGTTTAGTTGCACTTCTC
TTCTTGCAGTTTGACATAAATAAAGAGAGCTACATACGTCGTCCAGAAGA
AAGCAGTTCAGTTGTTGTAGTTTTTATGTTGGTTTATATTGCTGTCAAAG
TTCAAGGGAGTATATAGCACTACTTACCACCGTACAAATAATACGCTGTA
CGCGCATATGATTTCTACAGCTGCGGTAGCTGCATGCAGTAGTCTACTGG
TCTGGTACAGCACACTTTAATGTGGACTACTATATCGTAATGAGCTGTGG
TCTTGAGTTTGAAAACTGCCCGGCCCGGTCCAAATCGTGTTACACATGCT
GGAAAATTGAGGGAAGTAGTAGTGTACATGAGAGTGCAAAGAGTGCCCGC
CCCCATCCATAATTCTAACTTGCTATAACTTCTAATAAATATTTGTTGTG
GAGGGATTGAATTGATTGATAGAATTCTCAGCCCGTCGTTACACGGGAGC
AAAACACCATACAGAAGGAAAACGTACGTATGTACTCTCCTATATACGAA
AAGGAATAAACTCGGCAACGGTACCAAATACTCTGAAAAAGCGACGTCTC
CCAAGGGAAACAAAATAGAAACAGGTCCTGGGTGCGTTCTGTATTTTCTT
CAAAAACAGGACACTAGACAATTAATTATTGTCAGCTAACTTCGTGTGGC
TACCCGGGGCGAATGCGTATCGAAGAACGGTTGGACTAAGGTCACGCATT
TTTTAATGCTGAAGGAAGCAAAGAGAAGAAAAGAACGAAACAAAACCAAC
CAACGCCGTAACGCCCCAGCAGAAAAGAGAGGCATGCAATATACTTCACT
GTAGACAGAATCGGCAAACAAGGCAGCAACGACAAAAATTGCGCCACTTG
TGGCTACTAGGTACAGTTGTTATCAACGATGGCGGGCGAACCAGCACGAG
CACGCACGCGTTGGGTTATTCTCTCCTTGGTTGTTCCCGTCACATTCGGG
CATGCTCCCAACGCTAGGGACCCCACGAATACCGTAGTCCGGCCCTGGCT
TTCTCTACACAGTACAGCAGCGATCCGTTTCGCCATGATGAAACTTGAGG
TCGCTTGTTCGCCGTCTTGCCCACGACTACGTCTTGTTTTCTTCACATTA
ACCGATCGGGCCTCAACAGCAGTATAATGCGATGATTCTTTATTCCTTTG
CCCTTACAACAGGGCGGATCGCCGGTACTTTCAACATGCCTACGTCATGC
CAATAGTGGGTGTGGGAAAGAGAGGCGTATATTAATCGGTCCATCGTGAC
CTGCCAAGGCAGCACTCGTTCGGAACTACCTCGACCTTAACTGGCCCTGT
GCCGGCGGACTCTCGGCAGTGAACGGCATCGGTACGCAATTGCGGGACCC
GATGAACTCGGGACTGACCCGATGGCGTATGGCGGTTTTAAAATAAATAA
ATGGACGCCGTTGCGGAACTCGGGAGGAATCTCGTAAGTAAGCACCAGAT
TCAGCCAGAGTATGGAGATGAGCAGGCTGACGCGGGTGGGGACTGCCGAA
CCCGTCTCGCGAGACCAAATTTTCAGGCACGAACGCGGAGGACAGGGAAA
TATTAATTTTCCCTGTTCAGCTAACCACGTGCAGGATTGACATACTCTTG
CTATATATGTGTGTGTGACTATATATACATACATACATGGACATACATAC
CTACAGGGCAGCCCAACTCAACAATGCTGCGGTGACGTCACTTCCTAGAA
AGTGCAATAATCAGATTTGACAGCAGTATCGTACAGTAGTACAGAGCAAA
AATGTTGATACCGTACCTTACGTTAGTTCTTCGACGTCAGCGTCGGAGGG
TACGAGGATGCAAACAACGGACAGCAATACTAGTACTCCTGTAGCATCAA
TAGAAGGGGAAGTATCATATGTTCTCCCGCCCCTGCCGCTGCTCCATGCA
CCGTCAGACTCGGAGGCTGAAGCAAAGCGAAGGGCCTCCTGCGAGAGGAG
GAATACCCACCGATTGCGCAAGATCTTCGAATGGTACCGCCCGGATGCAC
CGGTAGCAGGCCACCACTTCGGCGGCGACCTTGGCAAGAAAGCGTCGGAA
ACCAGCGACAACGCAAGTAGTACCAGCACCAGCAGAGCTAGTGCGTCCGA
CTGTTCTTCCTTGGCTGATCACGAGAGGGCGGCCAGCTGGGGTCCTTTTC
TTGCGGTGAGGACAGCACTTTCTGTATGCAGCGTATGTATGTCAGCTGAA
CAGGAAAAAATATTACCTGGTATATAATATTATCCTGTCCCCGTTCACGC
CTGAGAATTTGGTCTCGCGAGACGGGTTCGACCGTCCCGTCTCGCGTGAG
CCTGCTCATTCTCCGTACCCAGTCAGGCTATGAATTTGGTGCTTTCTCAC
GGGATCCCTCCCGATTTCTGCGACGGCGTCCACGTATACCGCCAACCGCC
ATCGGGCCAGTTCCAAATCTATCGGGTCACGCAACAAATTGCGTACCGAT
GGCTTTCACTGCCGAGGGTCCCCCGGCATAGGGCCAGTAATCCTCAAGGT
AGTTGGAGCAACAACTGGTGGTGCTGCTGCGCCTCTCTTCTCCCACACCC
ACTATTGGTGTGGACGTCGCCGCCGATATCGGGAGGAATCCCGTCAGTAA
GCACCAAATTCATAGCCTGGCTGAGTATGGAGAATGAGCAGGCTGGCCGG
GACGGGACGGGACGGCCGAACCCATTACGCGAGACCAAATTATCAGGCAC
GAGCGGGGACAGGGAAACATCAAATTCCCTGTTCAGCTGACCACGAGCAG
GATTAGCAACCTTACCCGGTAGATCAATAGTCTACTCTGCTGTATGCCAT
AACTATACACACATATATGAAGTGGATATGTGTGATATGTGCATGTCTAA
GCTATTTTTGTAGAACTAATTGTACTGTGATACGCCGACGGAGTTCTTGT
TCCATACGAAGGGGGGAGTGGGCTCTGTACCGTCGTACGTACGACGAAGT
TACCATAAAGGGATACAACAACAAGCGACGAAAGCAGCGTTTGGAAATAA
AAACTGAAGGCATCTAAACCTTCACCCTCTTCCGAGCACCCACCCAGTAA
GGGGGGGGGGATGTCGAAACGTTTAGTTTGGTGCGAACACTTTGGCTCCT
AGGACAAACGCTACTTCTTCATGGGATCCAAGCAATAATAACTTCAACAC
GGTTGGTTGCCTTTTAGTGTACCGTGGGCCTCAAGTACTCGAACAGCAGT
GGGTTTGGGTTTGTAGCAGATAGTAGGCTCCGACCGTGTAGGGATTCTAA
TCCTTGTTCTGTCTTGTTGGAGTCAGTTTACATTTCCCCCCGGGTCTCCG
TTTTCACGCCCGAGAGAATCTGGTGCGGTAGGTCCGACGTAGTACGTAGC
GAACGATGTGTCGAATCGTTCCCTGGAAGGTGGTGTGGATGGGTATGTTC
CGAAGGAGAGGTTCGAACTCCTGACTCATTCTGATGTTGTTTCTGCTGAC
ACCATTATACAATGCACCCTACTTCCTCCCTATTGGAGTATAATAATTCC
GGAACATCTGCTCGTGAGAGGATGTCGTTATTGCAGGAGTATTAAATTAC
AGTGTACTAAGTAAACAATTCGCGTTCTCGAGCTCCCCCGGCTTGTTGTA
AGCAGGAACAAACCCCAACCTCAATAAGGCCCTGACGGTTGTCGCCCCCG
TCCTCCTTGAACAACTGGTTGATTGATTGTTTAGGAACAGGACGGTTCCG
GACAGCAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig695:324376..328583+

>mRNA_F-serratus_M_contig695.18059.1 ID=mRNA_F-serratus_M_contig695.18059.1|Name=mRNA_F-serratus_M_contig695.18059.1|organism=Fucus serratus male|type=CDS|length=840bp|location=Sequence derived from alignment at F-serratus_M_contig695:324376..328583+ (Fucus serratus male)
AAAAGTTCAAGCCACGTGGAAAGCACAACAATAATCCTTCTCCAACAACA
TCAACTAACAGCCCGTTGCCAAATTTTCATCAGCTCCCCAGTACCGTCGA
TGCAGCCGAGTGGAGAGCAGGAAGGGTCTGTGGCCAACGAAACAGCAGAA
AAGTTCAAGCCACGTGGAAAGCACAACAATAATCCTTCTCCAACAACATC
AACTAACAGCCCGTTGCCAAATTTTCATCAGCTCCCCAGTACCGTCGATG
CAGCCGAGTGGAGAGCAGGAAGGGTCTGTGGCCAACGAAACAGCAGACTC
GGAGGCTGAAGCAAAGCGAAGGGCCTCCTGCGAGAGGAGGAATACCCACC
GATTGCGCAAGATCTTCGAATGGTACCGCCCGGATGCACCGGTAGCAGGC
CACCACTTCGGCGGCGACCTTGGCAAGAAAGCGTCGGAAACCAGCGACAA
CGCAAGTAGTACCAGCACCAGCAGAGCTAGTGCGTCCGACTGTTCTTCCT
TGGCTGATCACGAGAGGGCGGCCAGCTGGGGTCCTTTTCTTGCGACTCGG
AGGCTGAAGCAAAGCGAAGGGCCTCCTGCGAGAGGAGGAATACCCACCGA
TTGCGCAAGATCTTCGAATGGTACCGCCCGGATGCACCGGTAGCAGGCCA
CCACTTCGGCGGCGACCTTGGCAAGAAAGCGTCGGAAACCAGCGACAACG
CAAGTAGTACCAGCACCAGCAGAGCTAGTGCGTCCGACTGTTCTTCCTTG
GCTGATCACGAGAGGGCGGCCAGCTGGGGTCCTTTTCTTGCGGAACAGGA
CGGTTCCGGACAGCAGGAACAGGACGGTTCCGGACAGCAG
back to top